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gnu: Add r-glimma.
* gnu/packages/bioconductor.scm (r-glimma): New variable.
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@ -28,7 +28,8 @@ (define-module (gnu packages bioconductor)
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#:use-module (gnu packages cran)
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#:use-module (gnu packages cran)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages graph)
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#:use-module (gnu packages graph)
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#:use-module (gnu packages statistics))
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages web))
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(define-public r-bsgenome-dmelanogaster-ucsc-dm6
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(define-public r-bsgenome-dmelanogaster-ucsc-dm6
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(package
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(package
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@ -750,3 +751,30 @@ (define-public r-goseq
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"This package provides tools to detect Gene Ontology and/or other user
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"This package provides tools to detect Gene Ontology and/or other user
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defined categories which are over/under represented in RNA-seq data.")
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defined categories which are over/under represented in RNA-seq data.")
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(license license:lgpl2.0+)))
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(license license:lgpl2.0+)))
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(define-public r-glimma
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(package
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(name "r-glimma")
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(version "1.8.2")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "Glimma" version))
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(sha256
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(base32
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"0kfia60vrlys6amdchdix01iwbkwyb7nfjqn5hczsxp8rhmbg25s"))))
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(properties `((upstream-name . "Glimma")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-edger" ,r-edger)
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("r-jsonlite" ,r-jsonlite)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://github.com/Shians/Glimma")
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(synopsis "Interactive HTML graphics")
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(description
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"This package generates interactive visualisations for analysis of
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RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an
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HTML page. The interactions are built on top of the popular static
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representations of analysis results in order to provide additional
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information.")
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(license license:lgpl3)))
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