ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-11-16 03:45:24 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: r-tricycle: Move out of annotation packages.

Browse source 
* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the
section containing annotation packages.
This commit is contained in:
Ricardo Wurmus 2022-04-14 06:55:20 +02:00
parent 5743d50583
commit f6bc281cd7
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 37 additions and 37 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

74
gnu/packages/bioconductor.scm
View file

@ -775,43 +775,6 @@ (define-public r-ensdb-mmusculus-v79
Ensembl.")
(license license:artistic2.0)))
(define-public r-tricycle
(package
(name "r-tricycle")
(version "1.2.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "tricycle" version))
(sha256
(base32
"19yh7yif8630j845m9rddva2z0xy4jcw9j4hvyr076jqbyxz998r"))))
(properties `((upstream-name . "tricycle")))
(build-system r-build-system)
(propagated-inputs (list r-annotationdbi
r-circular
r-dplyr
r-genomicranges
r-ggplot2
r-iranges
r-rcolorbrewer
r-s4vectors
r-scater
r-scattermore
r-singlecellexperiment
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/hansenlab/tricycle")
(synopsis "Transferable representation and inference of cell cycle")
(description
"The package contains functions to infer and visualize cell cycle process
using Single-cell RNA-Seq data. It exploits the idea of transfer learning,
projecting new data to the previous learned biologically interpretable space.
The @code{tricycle} provides a pre-learned cell cycle space, which could be
used to infer cell cycle time of human and mouse single cell samples. In
addition, it also offer functions to visualize cell cycle time on different
embeddings and functions to build new reference.")
(license license:gpl3)))
(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
(package
(name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
@ -15424,6 +15387,43 @@ (define-public r-tcgabiolinks
starburst plots) in order to easily develop complete analysis pipelines.")
(license license:gpl3+)))
(define-public r-tricycle
(package
(name "r-tricycle")
(version "1.2.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "tricycle" version))
(sha256
(base32
"19yh7yif8630j845m9rddva2z0xy4jcw9j4hvyr076jqbyxz998r"))))
(properties `((upstream-name . "tricycle")))
(build-system r-build-system)
(propagated-inputs (list r-annotationdbi
r-circular
r-dplyr
r-genomicranges
r-ggplot2
r-iranges
r-rcolorbrewer
r-s4vectors
r-scater
r-scattermore
r-singlecellexperiment
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/hansenlab/tricycle")
(synopsis "Transferable representation and inference of cell cycle")
(description
"The package contains functions to infer and visualize cell cycle process
using Single-cell RNA-Seq data. It exploits the idea of transfer learning,
projecting new data to the previous learned biologically interpretable space.
The @code{tricycle} provides a pre-learned cell cycle space, which could be
used to infer cell cycle time of human and mouse single cell samples. In
addition, it also offer functions to visualize cell cycle time on different
embeddings and functions to build new reference.")
(license license:gpl3)))
(define-public r-tximeta
(package
(name "r-tximeta")