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gnu: scalapack: Remove use of deprecated MPI1 symbols.

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* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (scalapack)[source]: Use it.
This commit is contained in:
Eric Bavier 2019-02-13 12:46:09 -06:00
parent 2385012b89
commit f73750e6f4
No known key found for this signature in database
GPG key ID: FD73CAC719D32566
3 changed files with 173 additions and 1 deletions
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1
gnu/local.mk
View file

@ -1215,6 +1215,7 @@ dist_patch_DATA = \
%D%/packages/patches/rust-coresimd-doctest.patch \ %D%/packages/patches/rust-coresimd-doctest.patch \
%D%/packages/patches/rust-reproducible-builds.patch \ %D%/packages/patches/rust-reproducible-builds.patch \
%D%/packages/patches/rxvt-unicode-escape-sequences.patch \ %D%/packages/patches/rxvt-unicode-escape-sequences.patch \
%D%/packages/patches/scalapack-blacs-mpi-deprecations.patch \
%D%/packages/patches/scheme48-tests.patch \ %D%/packages/patches/scheme48-tests.patch \
%D%/packages/patches/scotch-build-parallelism.patch \ %D%/packages/patches/scotch-build-parallelism.patch \
%D%/packages/patches/scotch-integer-declarations.patch \ %D%/packages/patches/scotch-integer-declarations.patch \

3
gnu/packages/maths.scm
View file

@ -584,7 +584,8 @@ (define-public scalapack
version ".tgz")) version ".tgz"))
(sha256 (sha256
(base32 (base32
"0p1r61ss1fq0bs8ynnx7xq4wwsdvs32ljvwjnx6yxr8gd6pawx0c")))) "0p1r61ss1fq0bs8ynnx7xq4wwsdvs32ljvwjnx6yxr8gd6pawx0c"))
(patches (search-patches "scalapack-blacs-mpi-deprecations.patch"))))
(build-system cmake-build-system) (build-system cmake-build-system)
(inputs (inputs
`(("mpi" ,openmpi) `(("mpi" ,openmpi)

170
gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch Normal file
View file

@ -0,0 +1,170 @@
From f11c3f094ed5ca727ec819983425b6641db8227c Mon Sep 17 00:00:00 2001
From: Eric Bavier <bavier@member.fsf.org>
Date: Wed, 13 Feb 2019 09:32:11 -0600
Subject: [PATCH] BLACS: Remove use of long-deprecated MPI1 functions.
* BLACS/SRC/blacs_get_.c: 'MPI_Attr_get' -> 'MPI_Comm_get_attr'.
* BLACS/SRC/cgamn2d_.c, BLACS/SRC/cgamx2d_.c, BLACS/SRC/dgamn2d_.c,
BLACS/SRC/dgamx2d_.c, BLACS/SRC/igamn2d_.c, BLACS/SRC/igamx2d_.c,
BLACS/SRC/sgamn2d_.c, BLACS/SRC/sgamx2d_.c, BLACS/SRC/zgamn2d_.c,
BLACS/SRC/zgamx2d_.c: 'MPI_Type_struct' -> 'MPI_Type_create_struct'.
---
BLACS/SRC/blacs_get_.c | 2 +-
BLACS/SRC/cgamn2d_.c | 2 +-
BLACS/SRC/cgamx2d_.c | 2 +-
BLACS/SRC/dgamn2d_.c | 2 +-
BLACS/SRC/dgamx2d_.c | 2 +-
BLACS/SRC/igamn2d_.c | 2 +-
BLACS/SRC/igamx2d_.c | 2 +-
BLACS/SRC/sgamn2d_.c | 2 +-
BLACS/SRC/sgamx2d_.c | 2 +-
BLACS/SRC/zgamn2d_.c | 2 +-
BLACS/SRC/zgamx2d_.c | 2 +-
11 files changed, 11 insertions(+), 11 deletions(-)
diff --git a/BLACS/SRC/blacs_get_.c b/BLACS/SRC/blacs_get_.c
index e979767..d4b04cf 100644
--- a/BLACS/SRC/blacs_get_.c
+++ b/BLACS/SRC/blacs_get_.c
@@ -23,7 +23,7 @@ F_VOID_FUNC blacs_get_(int *ConTxt, int *what, int *val)
case SGET_MSGIDS:
if (BI_COMM_WORLD == NULL) Cblacs_pinfo(val, &val[1]);
iptr = &val[1];
- ierr=MPI_Attr_get(MPI_COMM_WORLD, MPI_TAG_UB, (BVOID **) &iptr,val);
+ ierr=MPI_Comm_get_attr(MPI_COMM_WORLD, MPI_TAG_UB, (BVOID **) &iptr,val);
val[0] = 0;
val[1] = *iptr;
break;
diff --git a/BLACS/SRC/cgamn2d_.c b/BLACS/SRC/cgamn2d_.c
index 2db6ccb..6958f32 100644
--- a/BLACS/SRC/cgamn2d_.c
+++ b/BLACS/SRC/cgamn2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC cgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/cgamx2d_.c b/BLACS/SRC/cgamx2d_.c
index 707c0b6..f802d01 100644
--- a/BLACS/SRC/cgamx2d_.c
+++ b/BLACS/SRC/cgamx2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC cgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/dgamn2d_.c b/BLACS/SRC/dgamn2d_.c
index dff23b4..a2627ac 100644
--- a/BLACS/SRC/dgamn2d_.c
+++ b/BLACS/SRC/dgamn2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC dgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/dgamx2d_.c b/BLACS/SRC/dgamx2d_.c
index a51f731..2a644d0 100644
--- a/BLACS/SRC/dgamx2d_.c
+++ b/BLACS/SRC/dgamx2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC dgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/igamn2d_.c b/BLACS/SRC/igamn2d_.c
index 16bc003..f6a7859 100644
--- a/BLACS/SRC/igamn2d_.c
+++ b/BLACS/SRC/igamn2d_.c
@@ -218,7 +218,7 @@ F_VOID_FUNC igamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/igamx2d_.c b/BLACS/SRC/igamx2d_.c
index 8165cbe..a7cfcc6 100644
--- a/BLACS/SRC/igamx2d_.c
+++ b/BLACS/SRC/igamx2d_.c
@@ -218,7 +218,7 @@ F_VOID_FUNC igamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/sgamn2d_.c b/BLACS/SRC/sgamn2d_.c
index d6c95e5..569c797 100644
--- a/BLACS/SRC/sgamn2d_.c
+++ b/BLACS/SRC/sgamn2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC sgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/sgamx2d_.c b/BLACS/SRC/sgamx2d_.c
index 4b0af6f..8897ece 100644
--- a/BLACS/SRC/sgamx2d_.c
+++ b/BLACS/SRC/sgamx2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC sgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/zgamn2d_.c b/BLACS/SRC/zgamn2d_.c
index 9de2b23..37897df 100644
--- a/BLACS/SRC/zgamn2d_.c
+++ b/BLACS/SRC/zgamn2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC zgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
diff --git a/BLACS/SRC/zgamx2d_.c b/BLACS/SRC/zgamx2d_.c
index 414c381..0e9d474 100644
--- a/BLACS/SRC/zgamx2d_.c
+++ b/BLACS/SRC/zgamx2d_.c
@@ -221,7 +221,7 @@ F_VOID_FUNC zgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
{
#endif
i = 2;
- ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
+ ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
ierr=MPI_Type_commit(&MyType);
bp->N = bp2->N = 1;
bp->dtype = bp2->dtype = MyType;
--
2.20.1