gnu: Add r-geoquery.

* gnu/packages/bioconductor.scm (r-geoquery): New variable.
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Ricardo Wurmus 2019-03-13 13:15:24 +01:00
parent f088775799
commit f9201d6704
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@ -2123,3 +2123,34 @@ (define-public r-scone
different normalization schemes for single-cell RNA-seq and other
high-throughput analyses.")
(license license:artistic2.0)))
(define-public r-geoquery
(package
(name "r-geoquery")
(version "2.50.5")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GEOquery" version))
(sha256
(base32
"074dl00c8yi1ihpjkw7vl9vy2hggvipib0jn0hli0wrw7x1h9hg6"))))
(properties `((upstream-name . "GEOquery")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-dplyr" ,r-dplyr)
("r-httr" ,r-httr)
("r-limma" ,r-limma)
("r-magrittr" ,r-magrittr)
("r-readr" ,r-readr)
("r-tidyr" ,r-tidyr)
("r-xml2" ,r-xml2)))
(home-page "https://github.com/seandavi/GEOquery/")
(synopsis "Get data from NCBI Gene Expression Omnibus (GEO)")
(description
"The NCBI Gene Expression Omnibus (GEO) is a public repository of
microarray data. Given the rich and varied nature of this resource, it is
only natural to want to apply BioConductor tools to these data. GEOquery is
the bridge between GEO and BioConductor.")
(license license:gpl2)))