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gnu: pigx-rnaseq: Update to 0.0.13.

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* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.13.
[arguments]: Remove obsolete substitutions.
[inputs]: Remove fastqc and trim-galore; add hisat2 and fastp.
This commit is contained in:
Ricardo Wurmus 2021-06-05 00:33:00 +02:00
parent 7382aa00b8
commit f98837a6ba
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GPG key ID: 197A5888235FACAC
1 changed files with 5 additions and 7 deletions
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12
gnu/packages/bioinformatics.scm
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@ -10355,7 +10355,7 @@ (define-public dropseq-tools
(define-public pigx-rnaseq
(package
(name "pigx-rnaseq")
(version "0.0.10")
(version "0.0.13")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/"
@ -10363,7 +10363,7 @@ (define-public pigx-rnaseq
"/pigx_rnaseq-" version ".tar.gz"))
(sha256
(base32
"0z3hr120wk2vrlmlpz1vp3n9wy3rq4y2mnzh2vf08qgqn2xfdwcw"))))
"0z9zid2c8q16lfzlnjd63nparknhv31qgv4h79algmvhkakm2pgk"))))
(build-system gnu-build-system)
(arguments
`(#:parallel-tests? #f ; not supported
@ -10373,19 +10373,17 @@ (define-public pigx-rnaseq
(add-after 'unpack 'disable-resource-intensive-test
(lambda _
(substitute* "Makefile.in"
(("(^ tests/test_trim_galore/test.sh).*" _ m) m)
(("^ tests/test_multiqc/test.sh") "")
(("^ test.sh") ""))
#t)))))
(("^ test.sh") "")))))))
(inputs
`(("coreutils" ,coreutils)
("sed" ,sed)
("gzip" ,gzip)
("snakemake" ,snakemake)
("fastqc" ,fastqc)
("multiqc" ,multiqc)
("star" ,star-for-pigx)
("trim-galore" ,trim-galore)
("hisat2" ,hisat2)
("fastp" ,fastp)
("htseq" ,htseq)
("samtools" ,samtools)
("r-minimal" ,r-minimal)