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gnu: r-seurat: Move to (gnu packages cran).

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* gnu/packages/bioinformatics.scm (r-seurat): Move from here...
* gnu/packages/cran.scm (r-seurat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
zimoun 2020-09-11 20:08:46 +02:00 committed by Ricardo Wurmus
parent b31c364467
commit f9c0b2e05a
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2 changed files with 65 additions and 65 deletions
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65
gnu/packages/bioinformatics.scm
View file

@ -9735,71 +9735,6 @@ (define-public r-msnid
and irregular enzymatic cleavages, mass measurement accuracy, etc.")
(license license:artistic2.0)))
(define-public r-seurat
(package
(name "r-seurat")
(version "3.2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
"1vj3dlsqakgnn4x1jz9fkl2cy0jzc5s65h1c20fnamr7lk45pnf2"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
("r-cluster" ,r-cluster)
("r-cowplot" ,r-cowplot)
("r-fitdistrplus" ,r-fitdistrplus)
("r-future" ,r-future)
("r-future-apply" ,r-future-apply)
("r-ggplot2" ,r-ggplot2)
("r-ggrepel" ,r-ggrepel)
("r-ggridges" ,r-ggridges)
("r-httr" ,r-httr)
("r-ica" ,r-ica)
("r-igraph" ,r-igraph)
("r-irlba" ,r-irlba)
("r-jsonlite" ,r-jsonlite)
("r-kernsmooth" ,r-kernsmooth)
("r-leiden" ,r-leiden)
("r-lmtest" ,r-lmtest)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
("r-miniui" ,r-miniui)
("r-patchwork" ,r-patchwork)
("r-pbapply" ,r-pbapply)
("r-plotly" ,r-plotly)
("r-png" ,r-png)
("r-rann" ,r-rann)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rcpp" ,r-rcpp)
("r-rcppannoy" ,r-rcppannoy)
("r-rcppeigen" ,r-rcppeigen)
("r-rcppprogress" ,r-rcppprogress)
("r-reticulate" ,r-reticulate)
("r-rlang" ,r-rlang)
("r-rocr" ,r-rocr)
("r-rsvd" ,r-rsvd)
("r-rtsne" ,r-rtsne)
("r-scales" ,r-scales)
("r-sctransform" ,r-sctransform)
("r-shiny" ,r-shiny)
("r-spatstat" ,r-spatstat)
("r-tibble" ,r-tibble)
("r-uwot" ,r-uwot)))
(home-page "http://www.satijalab.org/seurat")
(synopsis "Seurat is an R toolkit for single cell genomics")
(description
"This package is an R package designed for QC, analysis, and
exploration of single cell RNA-seq data. It easily enables widely-used
analytical techniques, including the identification of highly variable genes,
dimensionality reduction; PCA, ICA, t-SNE, standard unsupervised clustering
algorithms; density clustering, hierarchical clustering, k-means, and the
discovery of differentially expressed genes and markers.")
(license license:gpl3)))
(define-public r-aroma-light
(package
(name "r-aroma-light")

65
gnu/packages/cran.scm
View file

@ -24431,3 +24431,68 @@ (define-public r-maldiquant
alignment using warping functions, handling of replicated measurements as well
as allowing spectra with different resolutions.")
(license license:gpl3+)))
(define-public r-seurat
(package
(name "r-seurat")
(version "3.2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
"1vj3dlsqakgnn4x1jz9fkl2cy0jzc5s65h1c20fnamr7lk45pnf2"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
("r-cluster" ,r-cluster)
("r-cowplot" ,r-cowplot)
("r-fitdistrplus" ,r-fitdistrplus)
("r-future" ,r-future)
("r-future-apply" ,r-future-apply)
("r-ggplot2" ,r-ggplot2)
("r-ggrepel" ,r-ggrepel)
("r-ggridges" ,r-ggridges)
("r-httr" ,r-httr)
("r-ica" ,r-ica)
("r-igraph" ,r-igraph)
("r-irlba" ,r-irlba)
("r-jsonlite" ,r-jsonlite)
("r-kernsmooth" ,r-kernsmooth)
("r-leiden" ,r-leiden)
("r-lmtest" ,r-lmtest)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
("r-miniui" ,r-miniui)
("r-patchwork" ,r-patchwork)
("r-pbapply" ,r-pbapply)
("r-plotly" ,r-plotly)
("r-png" ,r-png)
("r-rann" ,r-rann)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rcpp" ,r-rcpp)
("r-rcppannoy" ,r-rcppannoy)
("r-rcppeigen" ,r-rcppeigen)
("r-rcppprogress" ,r-rcppprogress)
("r-reticulate" ,r-reticulate)
("r-rlang" ,r-rlang)
("r-rocr" ,r-rocr)
("r-rsvd" ,r-rsvd)
("r-rtsne" ,r-rtsne)
("r-scales" ,r-scales)
("r-sctransform" ,r-sctransform)
("r-shiny" ,r-shiny)
("r-spatstat" ,r-spatstat)
("r-tibble" ,r-tibble)
("r-uwot" ,r-uwot)))
(home-page "http://www.satijalab.org/seurat")
(synopsis "Seurat is an R toolkit for single cell genomics")
(description
"This package is an R package designed for QC, analysis, and
exploration of single cell RNA-seq data. It easily enables widely-used
analytical techniques, including the identification of highly variable genes,
dimensionality reduction; PCA, ICA, t-SNE, standard unsupervised clustering
algorithms; density clustering, hierarchical clustering, k-means, and the
discovery of differentially expressed genes and markers.")
(license license:gpl3)))