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gnu: Add r-bamsignals.

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* gnu/packages/bioinformatics.scm (r-bamsignals): New variable.
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Ricardo Wurmus 2016-08-18 13:09:42 +02:00 committed by Ricardo Wurmus
parent 52765a63ca
commit fe02c4c98a
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gnu/packages/bioinformatics.scm
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@ -6350,6 +6350,36 @@ (define-public r-rhtslib
of other R packages who wish to make use of HTSlib.")
(license license:lgpl2.0+)))
(define-public r-bamsignals
(package
(name "r-bamsignals")
(version "1.4.3")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "bamsignals" version))
(sha256
(base32
"1xqiqvg52p6fcvhr4146djbz79r3j1kmh75mq7rndwglmiybpwmy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rcpp" ,r-rcpp)
("r-rhtslib" ,r-rhtslib)
("r-zlibbioc" ,r-zlibbioc)))
(inputs
`(("zlib" ,zlib)))
(home-page "http://bioconductor.org/packages/bamsignals")
(synopsis "Extract read count signals from bam files")
(description
"This package allows to efficiently obtain count vectors from indexed bam
files. It counts the number of nucleotide sequence reads in given genomic
ranges and it computes reads profiles and coverage profiles. It also handles
paired-end data.")
(license license:gpl2+)))
(define-public emboss
(package
(name "emboss")