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gnu: Add r-bamsignals.
* gnu/packages/bioinformatics.scm (r-bamsignals): New variable.
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@ -6350,6 +6350,36 @@ (define-public r-rhtslib
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of other R packages who wish to make use of HTSlib.")
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of other R packages who wish to make use of HTSlib.")
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(license license:lgpl2.0+)))
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(license license:lgpl2.0+)))
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(define-public r-bamsignals
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(package
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(name "r-bamsignals")
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(version "1.4.3")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "bamsignals" version))
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(sha256
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(base32
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"1xqiqvg52p6fcvhr4146djbz79r3j1kmh75mq7rndwglmiybpwmy"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rcpp" ,r-rcpp)
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("r-rhtslib" ,r-rhtslib)
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("r-zlibbioc" ,r-zlibbioc)))
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(inputs
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`(("zlib" ,zlib)))
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(home-page "http://bioconductor.org/packages/bamsignals")
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(synopsis "Extract read count signals from bam files")
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(description
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"This package allows to efficiently obtain count vectors from indexed bam
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files. It counts the number of nucleotide sequence reads in given genomic
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ranges and it computes reads profiles and coverage profiles. It also handles
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paired-end data.")
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(license license:gpl2+)))
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(define-public emboss
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(define-public emboss
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(package
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(package
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(name "emboss")
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(name "emboss")
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