gnu: Add r-plsdabatch.

* gnu/packages/bioinformatics.scm (r-plsdabatch): New variable.
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Ricardo Wurmus 2023-03-06 14:54:12 +01:00
parent 760be95385
commit fe9bcf9db2
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@ -8669,6 +8669,46 @@ (define-public r-doubletcollection
benchmark of those eight mentioned methods.")
(license license:gpl3+))))
(define-public r-plsdabatch
(let ((commit "4aadf3a99709afae462db310386b6cf5db20088c")
(revision "1"))
(package
(name "r-plsdabatch")
(version (git-version "0.2.3" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/EvaYiwenWang/PLSDAbatch")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"047l923lq2ji7rwybh9b9zkblzvvhkpli5gb2x8g2q9f2n5022nr"))))
(properties `((upstream-name . "PLSDAbatch")))
(build-system r-build-system)
(propagated-inputs (list r-ggplot2
r-ggpubr
r-gridextra
r-lmertest
r-mixomics
r-mvtnorm
r-performance
r-rdpack
r-scales))
(native-inputs (list r-knitr))
(home-page "https://github.com/EvaYiwenWang/PLSDAbatch")
(synopsis "PLSDA-batch")
(description
"This package provides a new batch effect correction method based on
Projection to Latent Structures Discriminant Analysis named PLSDA-batch to
correct data prior to any downstream analysis. PLSDA-batch estimates latent
components related to treatment and batch effects to remove batch variation.
The method is multivariate, non-parametric and performs dimension reduction.
Combined with centered log ratio transformation for addressing uneven library
sizes and compositional structure, PLSDA-batch addresses all characteristics
of microbiome data that existing correction methods have ignored so far.")
(license license:gpl3))))
(define-public r-psupertime
(let ((commit "73825a28d3bd9bc881c15ee0c4c218eec1c9c207")
(revision "1"))