gnu: Add r-dsb.

* gnu/packages/bioconductor.scm (r-dsb): New variable.

Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
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nafkhamdc 2024-01-10 13:02:35 +00:00 committed by Ricardo Wurmus
parent db75afb4c5
commit feab3943c1
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@ -5639,6 +5639,35 @@ (define-public r-dropletutils
pseudo-cells, and downsampling of the count matrix.")
(license license:gpl3)))
;; This is a CRAN package, but it depends on r-limma from Bioconductor.
(define-public r-dsb
(package
(name "r-dsb")
(version "1.0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "dsb" version))
(sha256
(base32 "1xzhd4q04c1vql49r6m4zskpx7f5hkl5hmdgr3gsbxb73xfs51v2"))))
(properties `((upstream-name . "dsb")))
(build-system r-build-system)
(propagated-inputs (list r-limma r-magrittr r-mclust))
(native-inputs (list r-knitr r-rmarkdown))
(home-page "https://github.com/niaid/dsb")
(synopsis
"Normalize & denoise droplet single cell protein data (CITE-Seq)")
(description
"R-dsb improves protein expression analysis in droplet-based single-cell
studies. The package specifically addresses noise in raw protein UMI counts
from methods like CITE-seq. It identifies and removes two main sources of
noiseprotein-specific noise from unbound antibodies and droplet/cell-specific
noise. The package is applicable to various methods, including CITE-seq,
REAP-seq, ASAP-seq, TEA-seq, and Mission Bioplatform data. Check the vignette
for tutorials on integrating dsb with Seurat and Bioconductor, and using dsb
in Python.")
(license license:cc0)))
(define-public r-dss
(package
(name "r-dss")