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gnu: Add lcalc.
* gnu/packages/sagemath.scm (lcalc): New variable. * gnu/packages/patches/lcalc-default-parameters-1.patch, gnu/packages/patches/lcalc-default-parameters-2.patch, gnu/packages/patches/lcalc-lcommon-h.patch, gnu/packages/patches/lcalc-using-namespace-std.patch: New files. * gnu/local.mk (dist_patch_DATA): Register patches.
This commit is contained in:
Andreas Enge
parent
88f913e8ad
commit
fedb9571eb
6 changed files with 209 additions and 0 deletions
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@ -973,6 +973,10 @@ dist_patch_DATA = \
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%D%/packages/patches/kodi-set-libcurl-ssl-parameters.patch \
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%D%/packages/patches/kodi-skip-test-449.patch \
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%D%/packages/patches/laby-make-install.patch \
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%D%/packages/patches/lcalc-default-parameters-1.patch \
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%D%/packages/patches/lcalc-default-parameters-2.patch \
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%D%/packages/patches/lcalc-lcommon-h.patch \
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%D%/packages/patches/lcalc-using-namespace-std.patch \
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%D%/packages/patches/lcms-CVE-2018-16435.patch \
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%D%/packages/patches/ldc-bootstrap-disable-tests.patch \
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%D%/packages/patches/ldc-disable-phobos-tests.patch \
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26
gnu/packages/patches/lcalc-default-parameters-1.patch
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26
gnu/packages/patches/lcalc-default-parameters-1.patch
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@ -0,0 +1,26 @@
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Patch taken from the Sage packaging system.
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diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h
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--- lcalc-1.23-vanilla/include/Ldirichlet_series.h 2012-08-08 23:21:55.000000000 +0200
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+++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h 2014-04-21 14:37:59.027464849 +0200
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@@ -43,7 +43,7 @@
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//XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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template <class ttype>
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Complex L_function <ttype>::
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-dirichlet_series(Complex s, long long N=-1)
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+dirichlet_series(Complex s, long long N)
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{
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Complex z=0.;
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long long m,n;
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diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h
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--- lcalc-1.23-vanilla/include/L.h 2012-08-08 23:21:55.000000000 +0200
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+++ lcalc-1.23-fixed-gcc.4.9/include/L.h 2014-04-21 14:32:04.003467348 +0200
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@@ -491,7 +491,7 @@
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//#include "Ldirichlet_series.h" //for computing Dirichlet series
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Complex partial_dirichlet_series(Complex s, long long N1, long long N2);
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- Complex dirichlet_series(Complex s, long long N);
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+ Complex dirichlet_series(Complex s, long long N=-1LL);
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//#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series
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//void compute_taylor_series(int N, int K, Complex s_0, Complex *series);
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58
gnu/packages/patches/lcalc-default-parameters-2.patch
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58
gnu/packages/patches/lcalc-default-parameters-2.patch
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@ -0,0 +1,58 @@
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Patch taken from the Sage packaging system.
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--- lcalc-1.23/include/Lgamma.h 2012-08-08 23:21:55.000000000 +0200
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+++ lcalc-1.23/include/Lgamma.h 2014-05-18 21:15:27.786889718 +0200
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@@ -77,7 +77,7 @@
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//n=0 should just give log_GAMMA(z)... thus making log_GAMMA
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//code obsolete. But leave log_GAMMA intact anyways.
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template <class ttype>
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-precise(ttype) log_GAMMA (ttype z,int n=0)
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+precise(ttype) log_GAMMA (ttype z,int n)
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{
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int M;
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precise(ttype) log_G,r,r2,y;
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@@ -230,7 +230,7 @@
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//value exp_w which holds exp(-w)
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//computes G(z,w), so there's an extra w^(-z) factor.
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template <class ttype>
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-Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false)
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+Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle)
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{
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Complex G;
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@@ -334,7 +334,7 @@
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template <class ttype>
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-ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false) //computes G(z,w) via continued fraction
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+ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via continued fraction
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{
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ttype G;
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@@ -424,7 +424,7 @@
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}
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template <class ttype>
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-ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false) //computes G(z,w) via asymptotic series
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+ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via asymptotic series
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{
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if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl;
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@@ -446,7 +446,7 @@
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template <class ttype>
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-ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false) //computes g(z,w)
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+ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle) //computes g(z,w)
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{
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ttype g;
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@@ -604,7 +604,7 @@
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}
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template <class ttype>
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-Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme")
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+Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method)
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{
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Complex SUM=0;
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13
gnu/packages/patches/lcalc-lcommon-h.patch
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13
gnu/packages/patches/lcalc-lcommon-h.patch
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@ -0,0 +1,13 @@
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Patch taken from the Sage packaging system.
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--- src/include/Lcommon.h 2010-01-31 15:16:45.000000000 +0000
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+++ src/include/Lcommon.h 2011-03-08 21:19:11.849443238 +0000
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@@ -25,7 +25,7 @@
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#ifdef USE_MPFR
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inline double lcalc_to_double(const double& x) { return x; }
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#endif
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-//inline double lcalc_to_double(const long double& x) { return x; }
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+inline double lcalc_to_double(const long double& x) { return x; }
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inline double lcalc_to_double(const int& x) { return x; }
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inline double lcalc_to_double(const long long& x) { return x; }
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inline double lcalc_to_double(const short& x) { return x; }
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43
gnu/packages/patches/lcalc-using-namespace-std.patch
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43
gnu/packages/patches/lcalc-using-namespace-std.patch
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@ -0,0 +1,43 @@
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Patch taken from the Sage packaging system.
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diff --git a/include/Lcommon.h b/include/Lcommon.h
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index 1b3be43..bf40532 100644
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--- a/include/Lcommon.h
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+++ b/include/Lcommon.h
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@@ -48,7 +48,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th
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// Loop i from m to n
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// Useful in tidying up most for loops
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-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
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+#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
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// A class for calculations involving polynomials of small degree
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// Not efficient enough for huge polynomials
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diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h
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index 86ae4df..33c560c 100644
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--- a/include/Lcommon_ld.h
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+++ b/include/Lcommon_ld.h
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@@ -53,7 +53,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th
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// Loop i from m to n
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// Useful in tidying up most for loops
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-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
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+#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
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// A class for calculations involving polynomials of small degree
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// Not efficient enough for huge polynomials
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diff --git a/include/Lglobals.h b/include/Lglobals.h
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index 60002e4..ca2606c 100644
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--- a/include/Lglobals.h
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+++ b/include/Lglobals.h
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@@ -24,9 +24,9 @@
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#ifndef Lglobals_H
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#define Lglobals_H
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+#include <valarray>
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using namespace std;
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-#include <valarray>
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#ifdef USE_MPFR
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#include "Lgmpfrxx.h"
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typedef mpfr_class Double;
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@ -24,6 +24,7 @@ (define-module (gnu packages sagemath)
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#:use-module (guix git-download)
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#:use-module (guix packages)
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#:use-module (guix utils)
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#:use-module (gnu packages)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages bdw-gc)
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@ -353,3 +354,67 @@ (define-public brial
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used as internal storage type for polynomial structures.")
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(license license:gpl2+)
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(home-page "https://gitlab.com/sagemath/zn_poly")))
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(define-public lcalc
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(package
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(name "lcalc")
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(version "1.23")
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;; The original home page of the project has disappeared, as well as
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;; code hosted by the original author on Google Code. The latter has
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;; been copied to gitlab.com/sagemath and purportedly contains patches
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;; for a never released version 1.3, that supposedly follows 1.23.
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;; We use the tarball as well as the patches hosted inside the sage
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;; package system distributed with the sage tarball.
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(source
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(origin
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(method url-fetch)
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(uri (string-append "ftp://ftp.fu-berlin.de/unix/misc/sage/spkg/"
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"upstream/lcalc/lcalc-1.23.tar.bz2"))
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(sha256
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(base32
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"1c6dsdshgxhqppjxvxhp8yhpxaqvnz3d1mlh26r571gkq8z2bm43"))
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(patches (search-patches "lcalc-lcommon-h.patch"
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"lcalc-default-parameters-1.patch"
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"lcalc-default-parameters-2.patch"
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"lcalc-using-namespace-std.patch"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ;no tests
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#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(add-before 'build 'prepare-build
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(lambda* (#:key outputs #:allow-other-keys)
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(chdir "src")
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(let ((out (assoc-ref outputs "out")))
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(substitute* "Makefile"
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(("^INSTALL_DIR= /usr/local")
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(string-append "INSTALL_DIR=" out))
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;; Sage renames the include directory, so we do it also.
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(("include/Lfunction")
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"include/libLfunction")
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;; Add --std=c++11 to be compatible with the "auto" keyword
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;; introduced by lcalc-using-namespace-std.patch.
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(("^#EXTRA= -pg")
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"EXTRA=--std=c++11")))
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#t))
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(add-before 'install 'make-output-dirs
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(lambda* (#:key outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin"))
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(lib (string-append out "/lib"))
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(include (string-append out "/include")))
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(mkdir-p bin)
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(mkdir-p lib)
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(mkdir-p include))
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#t)))))
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;; FIXME:
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;; We need to add pari-gp and probably pari related patches from the
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;; sage project, as well as uncomment the line setting PARI_DEFINE in
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;; the Makefile to get the full functionality of this package.
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;; For the time being, we hope that sage can be compiled without.
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(synopsis "C++ library for L-functions")
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(description "Lcalc computes L-functions, in particular the Riemann
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zeta function and its twists by quadratic characters.")
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(license license:gpl2+)
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(home-page "https://gitlab.com/sagemath/sage")))
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