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gnu: Add r-curatedtcgadata.

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* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
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Ricardo Wurmus 2019-12-18 15:23:27 +01:00
parent 6f15ea2415
commit ff1146b9b1
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gnu/packages/bioconductor.scm
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@ -900,6 +900,39 @@ (define-public r-affydata
package @code{affy}.")
(license license:gpl2+)))
(define-public r-curatedtcgadata
(package
(name "r-curatedtcgadata")
(version "1.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "curatedTCGAData" version 'experiment))
(sha256
(base32
"02y6cgihmsl9b4a9mmcdjjgjp06lpz04biyvxd3n5lk5gnqd9r3y"))))
(properties
`((upstream-name . "curatedTCGAData")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationhub" ,r-annotationhub)
("r-experimenthub" ,r-experimenthub)
("r-hdf5array" ,r-hdf5array)
("r-multiassayexperiment" ,r-multiassayexperiment)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://bioconductor.org/packages/curatedTCGAData/")
(synopsis "Curated data from The Cancer Genome Atlas")
(description
"This package provides publicly available data from The Cancer Genome
Atlas (TCGA) as @code{MultiAssayExperiment} objects.
@code{MultiAssayExperiment} integrates multiple assays (e.g., RNA-seq, copy
number, mutation, microRNA, protein, and others) with clinical / pathological
data. It also links assay barcodes with patient identifiers, enabling
harmonized subsetting of rows (features) and columns (patients / samples)
across the entire multi-'omics experiment.")
(license license:artistic2.0)))
;;; Packages