Commit graph

52090 commits

Author SHA1 Message Date
Ricardo Wurmus
72b67e0b36
gnu: Add r-activedriverwgs.
* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
2019-12-13 22:41:38 +01:00
Ricardo Wurmus
bd74d7e6fc
gnu: Add r-abtest.
* gnu/packages/cran.scm (r-abtest): New variable.
2019-12-13 22:41:38 +01:00
Ricardo Wurmus
a99c4c7584
gnu: Add r-abstractr.
* gnu/packages/cran.scm (r-abstractr): New variable.
2019-12-13 22:41:38 +01:00
Ricardo Wurmus
2ecd4e3bfd
gnu: Add r-emojifont.
* gnu/packages/cran.scm (r-emojifont): New variable.
2019-12-13 22:41:38 +01:00
Ricardo Wurmus
d7937243ba
gnu: Add r-showtext.
* gnu/packages/cran.scm (r-showtext): New variable.
2019-12-13 22:41:38 +01:00
Ricardo Wurmus
369e1bb6a8
gnu: Add r-showtextdb.
* gnu/packages/cran.scm (r-showtextdb): New variable.
2019-12-13 22:41:38 +01:00
Ricardo Wurmus
322e8d8579
gnu: Add r-sysfonts.
* gnu/packages/cran.scm (r-sysfonts): New variable.
2019-12-13 22:41:38 +01:00
Ricardo Wurmus
8990fc1584
gnu: Add r-rintrojs.
* gnu/packages/cran.scm (r-rintrojs): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
3e33377767
gnu: Add r-abemus.
* gnu/packages/cran.scm (r-abemus): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
ae07172c65
gnu: Add r-abcrlda.
* gnu/packages/cran.scm (r-abcrlda): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
84822497c2
gnu: Add r-abcdefba.
* gnu/packages/cran.scm (r-abcdefba): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
72e5c6e95f
gnu: Add r-rglpk.
* gnu/packages/cran.scm (r-rglpk): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
647ff4a98b
gnu: Add r-abcadm.
* gnu/packages/cran.scm (r-abcadm): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
8fed766a7d
gnu: Add r-abc-rap.
* gnu/packages/cran.scm (r-abc-rap): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
595d950223
gnu: Add r-abacus.
* gnu/packages/cran.scm (r-abacus): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
6e6fa954af
gnu: r-shiny: Update to 1.4.0.
* gnu/packages/cran.scm (r-shiny): Update to 1.4.0.
[arguments]: Update list of JavaScript files to replace.
[propagated-inputs]: Add r-fastmap.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
c20a81eed1
gnu: Add r-fastmap.
* gnu/packages/cran.scm (r-fastmap): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
303c7d1dff
gnu: Add r-aasea.
* gnu/packages/cran.scm (r-aasea): New variable.
2019-12-13 22:41:37 +01:00
Ricardo Wurmus
59beb0d23f
gnu: Add r-networkd3.
* gnu/packages/cran.scm (r-networkd3): New variable.
2019-12-13 22:41:36 +01:00
Ricardo Wurmus
db07641a67
gnu: Add r-bios2cor.
* gnu/packages/cran.scm (r-bios2cor): New variable.
2019-12-13 22:41:36 +01:00
Ricardo Wurmus
e44c4cd73c
gnu: Add r-bio3d.
* gnu/packages/cran.scm (r-bio3d): New variable.
2019-12-13 22:41:36 +01:00
Ricardo Wurmus
ba4fcea499
gnu: r-desolve: Update description.
* gnu/packages/cran.scm (r-desolve)[description]: Use texinfo syntax.
2019-12-13 22:41:33 +01:00
Efraim Flashner
c45fdf90a9
gnu: imlib2: Update to 1.6.1.
* gnu/packages/image.scm (imlib2): Update to 1.6.1.
2019-12-13 22:57:31 +02:00
Brett Gilio
e19a539388
gnu: emacs-telega: Correct path coding for ffmpeg.
* gnu/packages/emacs-xyz.scm (emacs-telega)[arguments]: Continuation of the
  previous patch. Adds a hard-coded path from NAME `ffmpeg-bin` to work around
  issue of ffmpeg not being found on the system PATH.
2019-12-13 12:37:15 -06:00
Leo Prikler
5f12df7ea6
gnu: emacs-telega: Patch ffplay instead of propagating.
* gnu/packages/emacs-xyz.scm (emacs-telega) [phases]:
<telega-data-patch>: Rename to telega-paths-patch.
<telega-paths-patch>: Substitute ffplay path for patching.
[propagated-inputs] <ffmpeg>: Remove.
[inputs] <ffmpeg>: Add.

Fixes: #38590 <https://bugs.gnu.org/38590>

Signed-off-by: Brett Gilio <brettg@posteo.net>
Co-authored-by: Brett Gilio <brettg@posteo.net>
2019-12-13 12:01:20 -06:00
Ludovic Courtès
085bdfd092
gnu: guile-next: Update to 2.9.7.
* gnu/packages/guile.scm (guile-next): Update to 2.9.7.
2019-12-13 18:04:04 +01:00
Ludovic Courtès
94fea21b21
gnu: hdf5@1.10: Update to 1.10.5.
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5.  Remove
"hdf5-mpi-deprecations.patch".
* gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-13 18:04:04 +01:00
Ludovic Courtès
6212146f88
import: utils: Update docstring of 'recursive-import'.
This is a followup to 70a8e13277.

* guix/import/utils.scm (recursive-import): Update docstring.
2019-12-13 18:04:04 +01:00
Brett Gilio
19ba75dc02
gnu: python-yapf: Update to 0.29.0.
* gnu/packages/python-xyz.scm (python-yapf): Update to 0.29.0.
2019-12-13 07:30:13 -06:00
Brett Gilio
d1efb11a0c
gnu: python-blessings: Update comment on test suite.
* gnu/packages/terminals.scm (python-blessings): Test suite has been revised.
[arguments]: Change comment to reflect change in test suite regarding TTY.
[native-inputs]: Pass python-six, which is required for test suite.
2019-12-13 07:06:39 -06:00
Brett Gilio
5076c13b49
gnu: python-blessings: Update to 1.7.
* gnu/packages/terminals.scm (python-blessings): Update to 1.7.
2019-12-13 07:06:27 -06:00
Brett Gilio
2ecbba2408
gnu: python-semver: Adjust indentation.
* gnu/packages/python-xyz.scm (python-semver): Adjust indentation.
2019-12-13 06:56:12 -06:00
Brett Gilio
c587482dcb
gnu: python-semver: Do not patch virtualenv for tests.
* gnu/packages/python-xyz.scm (python-semver)[arguments]: The substitution
  case for patching virtualenv versioning is no longer requireed.
2019-12-13 06:54:23 -06:00
Brett Gilio
594280b103
gnu: python-semver: Update to 2.9.0.
* gnu/packages/python-xyz.scm (python-semver): Update to 2.9.0.
2019-12-13 06:54:05 -06:00
Brett Gilio
c08dc8d593
gnu: certbot: Update to 1.0.0.
* gnu/packages/tls.scm (certbot): Update to 1.0.0.
2019-12-13 06:47:03 -06:00
Brett Gilio
9e6794a7f4
gnu: python-acme: Update to 1.0.0.
* gnu/packages/tls.scm (python-acme): Update to 1.0.0.
2019-12-13 06:46:11 -06:00
Pierre Neidhardt
da31e7d9ec
doc: Link to "Building from Git" instead of quoting command to build Guix.
* doc/contributing.texi (Submitting Patches): Remove example.
Add link to "Building from Git" section.
2019-12-13 13:31:00 +01:00
Brett Gilio
eb8aad6a23
gnu: emacs-telega: Add MP4/GIF support.
* gnu/packages/emacs-xyz.scm (emacs-telega)[propagated-inputs]: Pass ffmpeg in
  propagated-inputs to support playback of inline MP4 and GIF files.
2019-12-12 21:24:54 -06:00
Brett Gilio
f85c0f1878
gnu: emacs-telega: Update to 0.5.2-2.
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.2-2. Adds support
  for I18N.
2019-12-12 20:55:59 -06:00
Brett Gilio
7afb0b25df
gnu: emacs-telega: Modify description.
* gnu/packages/emacs-xyz.scm (emacs-telega)[description]: Modify the
  description to be easier to read.
2019-12-12 20:55:16 -06:00
Brett Gilio
b45af175b1
gnu: emacs-telega: Add sticker support.
* gnu/packages/emacs-xyz.scm (emacs-telega)[propagated-inputs]: Add libwebp to
  the propagated-inputs in order to emit stickers properly.
2019-12-12 20:51:28 -06:00
Maxim Cournoyer
e34e02707d
emacs-build-system: Ensure the core libraries appear last in the load path.
Fixes bug #38568 (see: https://bugs.gnu.org/38568).

* guix/build/emacs-build-system.scm (add-source-to-load-path): Ensure the core
libraries appear last in the load path.

Reported-by: Jelle Licht <jlicht@fsfe.org>
2019-12-13 10:48:28 +09:00
Brett Gilio
d057c52f95
gnu: emacs-telega: Update to 0.5.2.
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.2.
2019-12-12 18:41:17 -06:00
Christopher Baines
9705e40071
gnu: guix-data-service: Update to 0.0.1-7.156b7ee.
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-7.156b7ee.
[arguments]: Add guix-data-service-manage-build-servers to the list of
scripts.
2019-12-12 22:11:37 +00:00
Julien Lepiller
4d6d88bb7e
gnu: coq: Split coqide.
* gnu/packages/coq.scm (coq)[outputs]: Add "ide" output.
2019-12-12 20:10:18 +01:00
Florian Pelz
d8421fef1d
news: Add 'de' translation.
* etc/news.scm: Add 'de' translation.
2019-12-12 18:08:56 +00:00
Ludovic Courtès
16b92d0e6e
news: Add entry for "guix challenge --diff".
* etc/news.scm: Add entry for "guix challenge --diff".
2019-12-12 18:17:23 +01:00
Ludovic Courtès
828a39da68
challenge: Support "--diff=diffoscope".
* guix/scripts/challenge.scm (call-with-nar): New procedure.
(narinfo-contents): Express in terms of 'call-with-nar'.
(call-with-mismatches, report-differing-files/external): New
procedures.
(%diffoscope-command): New variable.
(%options): Support "diffoscope" and a string starting with "/".
* tests/challenge.scm (call-mismatch-test): New procedure.
("differing-files"): Rewrite in terms of 'call-mismatch-test'.
("call-with-mismatches"): New test.
* doc/guix.texi (Invoking guix challenge): Document it.
2019-12-12 17:56:58 +01:00
Ludovic Courtès
5208db3a52
challenge: Add "--diff".
* guix/scripts/challenge.scm (dump-port*): New variable.
(archive-contents, store-item-contents, narinfo-contents)
(differing-files, report-differing-files): New procedures.
(summarize-report): Add #:report-differences and call it.
(show-help, %options): Add "--diff".
(%default-options): Add 'difference-report' key.
(report-differing-files): Parameterize CURRENT-TERMINAL-COLUMNS and pass
 #:report-differences to 'summarize-report'.
* guix/tests/http.scm (%local-url): Add optional argument.
(call-with-http-server): Fix docstring typo.
* tests/challenge.scm (query-path-size, make-narinfo): New procedures.
("differing-files"): New test.
* doc/guix.texi (Invoking guix challenge): Document "--diff".
2019-12-12 17:56:58 +01:00
Ludovic Courtès
22f06a2128
progress: Add 'progress-report-port'.
* guix/scripts/substitute.scm (progress-report-port): Move to...
* guix/progress.scm (progress-report-port): ... here.  New procedure.
2019-12-12 17:56:58 +01:00