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56721 commits

Author SHA1 Message Date
Guillaume Le Vaillant
d0a6906d36
gnu: Add sbcl-clim-lisp. 
* gnu/packages/lisp-xyz.scm (sbcl-clim-lisp): New variable.
 2020-07-17 15:35:56 +02:00
Jakub Kądziołka
e28a824f08
gnu: rust: Use search-patches instead of map search-patch 
* gnu/packages/rust.scm: Replace instances of map search-patch with
search-patches.
 2020-07-17 15:22:57 +02:00
Jakub Kądziołka
17666c090b
gnu: Add Rust 1.45. 
* gnu/packages/rust.scm (rust-1.45): New variable.
* gnu/packages/patches/rust-1.45-linker-locale.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch to the list.
 2020-07-17 14:21:38 +02:00
Efraim Flashner
7d49e1897c
gnu: ganeti-instance-debootstrap: Use a source file-name. 
* gnu/packages/virtualization.scm (ganeti-instance-debootstrap)[source]:
Add a file-name field.
 2020-07-17 14:59:16 +03:00
Efraim Flashner
2be973c35e
gnu: java-guava: Use a source file-name. 
* gnu/packages/java.scm (java-guava)[source]: Add a file-name field.
 2020-07-17 14:58:11 +03:00
Björn Höfling
12988adf18
gnu: osm2pgsql: Update to 1.2.2. 
* gnu/packages/geo.scm (osm2pgsql): Update to 1.2.2.
 2020-07-17 12:16:18 +02:00
Björn Höfling
7953f8b724
gnu: libosmium: Update to 2.15.6. 
* gnu/packages/geo.scm (libosmium): Update to 2.15.6.
 2020-07-17 12:16:18 +02:00
Björn Höfling
b45be61267
gnu: gdal: Update to 3.1.2. 
* gnu/packages/geo.scm (gdal): Update to 3.1.2.
 2020-07-17 12:16:18 +02:00
Björn Höfling
1ee584057d
gnu: gdal: Add postgresql dependency. 
* gnu/packages/geo.scm (gdal)[inputs]: Add postgresql.
[native-inputs]: New field. Introduces pkg-config.
 2020-07-17 12:16:17 +02:00
Efraim Flashner
0e1428ac5d
gnu: quassel: Fix calling inxi script. 
* gnu/packages/irc.scm (quassel)[source]: Only remove bundled inxi script.
[arguments]: Adjust 'patch-inxi-reference phase to symlink packaged inxi
to where quassel expects it to be.
 2020-07-17 12:36:10 +03:00
Julien Lepiller
562408a8c0
gnu: Add maven-jar-plugin. 
* gnu/packages/maven.scm (maven-jar-plugin): New variable.
 2020-07-17 04:21:18 +02:00
Julien Lepiller
7c02294bc2
gnu: Add maven-surefire-plugin. 
* gnu/packages/maven.scm (maven-surefire-plugin): New variable.
 2020-07-17 04:21:15 +02:00
Julien Lepiller
b777e19437
gnu: Add maven-surefire-common. 
* gnu/packages/maven.scm (maven-surefire-common): New variable.
* gnu/packages/java.scm (java-hawtjni, java-jansi-native, java-jansi):
Install from pom file.
 2020-07-17 04:21:13 +02:00
Julien Lepiller
e1ee5a75f3
gnu: Add java-surefire-junit4. 
* gnu/packages/maven.scm (java-surefire-junit4): New variable.
 2020-07-17 04:21:10 +02:00
Julien Lepiller
586db0f9c5
gnu: Add java-surefire-common-junit4. 
* gnu/packages/maven.scm (java-surefire-common-junit4): New variable.
 2020-07-17 04:21:07 +02:00
Julien Lepiller
72ce48788d
gnu: Add java-surefire-common-junit3. 
* gnu/packages/maven.scm (java-surefire-common-junit3): New variable.
 2020-07-17 04:21:04 +02:00
Julien Lepiller
fd090644b3
gnu: Add java-surefire-common-java5. 
* gnu/packages/maven.scm (java-surefire-common-java5): New variable.
 2020-07-17 04:21:01 +02:00
Julien Lepiller
15725d9a78
gnu: Add java-surefire-extensions-api. 
* gnu/packages/maven.scm (java-surefire-extensions-api): New variable.
 2020-07-17 04:20:59 +02:00
Julien Lepiller
bf2769c23f
gnu: Add java-surefire-booter. 
* gnu/packages/maven.scm (java-surefire-booter): New variable.
 2020-07-17 04:20:55 +02:00
Julien Lepiller
ac8179a05c
gnu: Add java-surefire-api. 
* gnu/packages/maven.scm (java-surefire-api): New variable.
 2020-07-17 04:20:50 +02:00
Julien Lepiller
ef61b4a1be
gnu: Add maven-shared-utils-3.1. 
* gnu/packages/maven.scm (maven-shared-utils-3.1): New variable.
 2020-07-17 04:20:44 +02:00
Julien Lepiller
2a08d8ffd0
gnu: Add java-surefire-logger-api. 
* gnu/packages/maven.scm (java-surefire-logger-api): New variable.
 2020-07-17 04:20:40 +02:00
Julien Lepiller
dd607254ef
gnu: Add maven-compiler-plugin. 
* gnu/packages/maven.scm (maven-compiler-plugin): New variable.
 2020-07-17 04:20:36 +02:00
Julien Lepiller
c45e7ee688
gnu: Add maven-shared-incremental. 
* gnu/packages/maven.scm (maven-shared-incremental): New variable.
 2020-07-17 04:20:25 +02:00
Julien Lepiller
90a1d04cc1
gnu: Add java-plexus-compiler-manager. 
* gnu/packages/java.scm (java-plexus-compiler-manager): New variable.
(java-plexus-compiler-api, java-plexus-compiler-javac): Install from pom
file.
(java-plexus-compiler-javac): Install plexus components file.
 2020-07-17 04:19:58 +02:00
Julien Lepiller
8630a08099
gnu: add java-plexus-java. 
* gnu/packages/java.scm (java-plexus-java): New variable.
 2020-07-17 04:19:45 +02:00
Julien Lepiller
015e8774b7
gnu: java-plexus-component-metadata: Move to java.scm. 
* gnu/packages/maven.scm (maven-core-bootstrap): Make public and hidden.
(java-plexus-component-metadata): Move to ...
* gnu/packages/java.scm: ... here.
 2020-07-17 04:19:24 +02:00
Julien Lepiller
0ab9eba78e
gnu: Add java-qdox-2-M9. 
* gnu/packages/java.scm (java-qdox-2-M9): New variable.
(java-qdox): Install from pom file.
 2020-07-17 04:19:12 +02:00
Julien Lepiller
5bebb1e81f
gnu: Add maven-resources-plugin. 
* gnu/packages/maven.scm (maven-resources-plugin): New variable.
 2020-07-17 04:19:06 +02:00
Julien Lepiller
f0e3e6caa3
gnu: Add maven-filtering. 
* gnu/packages/maven.scm (maven-filtering): New variable.
* gnu/packages/java.scm (java-sisu-build-api): Install from pom file.
 2020-07-17 04:18:56 +02:00
Julien Lepiller
ebe6e6f5d2
gnu: Add maven-install-plugin. 2020-07-17 04:18:49 +02:00
Julien Lepiller
f738576086
gnu: maven-plugin-annotations: Install from pom file. 
* gnu/packages/maven.scm (maven-plugin-annotations): Install from pom
file.
 2020-07-17 04:18:36 +02:00
Julien Lepiller
ea806229c7
gnu: Add maven-artifact-transfer. 
* gnu/packages/maven.scm (maven-artifact-transfer): New variable.
 2020-07-17 04:18:31 +02:00
Julien Lepiller
e244157bee
gnu: Add maven-enforcer-plugin. 
* gnu/packages/maven.scm (maven-enforcer-plugin): New variable.
 2020-07-17 04:18:27 +02:00
Julien Lepiller
94261e7ce2
gnu: Add maven-enforcer-rules. 
* gnu/packages-maven.scm (maven-enforcer-rules): New variable.
 2020-07-17 04:18:21 +02:00
Julien Lepiller
c3951015d7
gnu: Add maven-enforcer-api. 
* gnu/packages/maven.scm (maven-enforcer-api): New variable.
* gnu/packages/patches/maven-enforcer-api-fix-old-dependencies.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2020-07-17 04:18:04 +02:00
Julien Lepiller
ee1bed9d64
gnu: Add maven-common-artifact-filters. 
* gnu/packages/maven.scm (maven-common-artifact-filters): New variable.
 2020-07-17 04:18:00 +02:00
Julien Lepiller
24bdd1504e
gnu: Add maven-dependency-tree. 
* gnu/packages/maven.scm (maven-dependency-tree): New variable.
 2020-07-17 04:17:56 +02:00
Julien Lepiller
84ca4dbe7f
gnu: Add maven-archiver. 
* gnu/packages/maven.scm (maven-archiver): New variable.
 2020-07-17 04:17:49 +02:00
Julien Lepiller
9f547318e9
gnu: Add maven-file-management. 
* gnu/packages/maven.scm (maven-file-management): New variable.
 2020-07-17 04:17:36 +02:00
Julien Lepiller
ebaaad1dff
gnu: add maven-shared-io. 
* gnu/packages/maven.scm (maven-shared-io): New variable.
 2020-07-17 04:17:32 +02:00
Julien Lepiller
708e0e1dbd
gnu: Add maven-shared-utils-3.0. 
* gnu/packages/maven.scm (maven-shared-utils-3.0): New variable.
 2020-07-17 04:17:26 +02:00
Julien Lepiller
1203b94f7e
gnu: Add maven-3.0-compat. 
* gnu/packages/maven.scm (maven-3.0-compat): New variable.
 2020-07-17 04:17:22 +02:00
Julien Lepiller
6f852f3b67
gnu: Add maven-3.0-core. 
* gnu/packages/maven.scm (maven-3.0-core): New variable.
 2020-07-17 04:17:15 +02:00
Julien Lepiller
65f0946a6c
gnu: Add maven-3.0-aether-provider. 
* gnu/packages/maven.scm (maven-3.0-aether-provider): New variable.
 2020-07-17 04:17:10 +02:00
Julien Lepiller
721a00c06a
gnu: Add maven-3.0-repository-metadata. 
* gnu/packages/maven.scm (maven-3.0-repository-metadata): New variable.
 2020-07-17 04:17:07 +02:00
Julien Lepiller
457efe296e
gnu: Add maven-3.0-plugin-api. 
* gnu/packages/maven.scm (maven-3.0-plugin-api): New variable.
 2020-07-17 04:17:04 +02:00
Julien Lepiller
279ec0c005
gnu: Add maven-3.0-model-builder. 
* gnu/packages/maven.scm (maven-3.0-model-builder): New variable.
 2020-07-17 04:17:01 +02:00
Julien Lepiller
b1cfac7a46
gnu: Add maven-3.0-settings-builder. 
* gnu/packages/maven.scm (maven-3.0-settings-builder): New variable.
 2020-07-17 04:16:48 +02:00
Julien Lepiller
ba58d208d4
gnu: Add maven-3.0-settings. 
* gnu/packages/maven.scm (maven-3.0-settings): New variable.
 2020-07-17 04:16:37 +02:00
Julien Lepiller
b909d58444
gnu: Add maven-3.0-model. 
* gnu/packages/maven.scm (maven-3.0-model): New variable.
 2020-07-17 04:16:33 +02:00
Julien Lepiller
756e976e56
gnu: maven-3.0-artifact: New variable. 
* gnu/packages/maven.scm (maven-3.0-artifact): New variable.
 2020-07-17 04:16:26 +02:00
Julien Lepiller
b277bd37ba
gnu: Add java-eclipse-aether-impl. 
* gnu/packages/maven.scm (java-eclipse-aether-impl): New variable.
 2020-07-17 04:16:24 +02:00
Julien Lepiller
47b4ed504d
gnu: Add java-eclipse-aether-util. 
* gnu/packages/maven.scm (java-eclipse-aether-util): New variable.
 2020-07-17 04:16:21 +02:00
Julien Lepiller
7a85b602ca
gnu: Add java-eclipse-aether-test-util. 
* gnu/packages/maven.scm (java-eclipse-aether-test-util): New variable.
 2020-07-17 04:16:18 +02:00
Julien Lepiller
5d1a24dd89
gnu: Add java-eclipse-aether-spi. 
* gnu/packages/maven.scm (java-eclipse-aether-spi): New variable.
 2020-07-17 04:16:15 +02:00
Julien Lepiller
9a7d55ee25
gnu: Add java-eclipse-aether-api. 
* gnu/packages/maven.scm (java-eclipse-aether-api): New variable.
 2020-07-17 04:16:09 +02:00
Julien Lepiller
540f362843
gnu: Add java-sonatype-aether-impl. 
* gnu/packages/maven.scm (java-sonatype-aether-impl): New variable.
(java-plexus-component-metadata): Propagate inputs.
 2020-07-17 04:15:52 +02:00
Julien Lepiller
8815719c96
gnu: Add java-sonatype-aether-util. 
* gnu/packages/maven.scm (java-sonatype-aether-util): New variable.
 2020-07-17 04:15:47 +02:00
Julien Lepiller
a1ed79363f
gnu: Add java-sonatype-aether-test-util. 
* gnu/packages/maven.scm (java-sonatype-aether-test-util): New variable.
 2020-07-17 04:15:44 +02:00
Julien Lepiller
c68e3dc139
gnu: Add java-sonatype-aether-spi. 
* gnu/packages/maven.scm (java-sonatype-aether-spi): New variable.
 2020-07-17 04:15:37 +02:00
Julien Lepiller
a18f0a7fd1
gnu: Add java-sonatype-aether-api. 
* gnu/packages/maven.scm (java-sonatype-aether-api): New variable.
 2020-07-17 04:15:26 +02:00
Julien Lepiller
6a25a3b1ba
gnu: Add java-plexus-digest. 
* gnu/packages/java.scm (java-plexus-digest): New variable.
 2020-07-17 04:15:13 +02:00
Julien Lepiller
29534ff7f3
gnu: java-modello-core: Propagate inputs. 
* gnu/packages/java.scm (java-modello-core): Propagate inputs.
(java-modello-plugins-java, java-modello-plugins-xml, java-modello-xpp3):
Remove java-modello-core's inputs and propagate.
 2020-07-17 04:15:05 +02:00
Julien Lepiller
159e6d9fe3
gnu: maven-shared-utils: Fix /bin/sh invocation. 
* gnu/packages/maven.scm (maven-shared-utils): Fix /bin/sh invocation.
 2020-07-17 04:14:50 +02:00
Julien Lepiller
51087d51df
gnu: maven: Install from pom file. 
* gnu/packages/java.scm (java-plexus-container-default-bootstrap)
(java-plexus-component-annotations, java-plexus-cipher, java-asm)
(java-jsr250, java-commons-cli, java-slf4j-api, java-slf4j-simple)
(java-bsh, java-jboss-el-api-spec, java-jboss-interceptors-api-spec)
(java-cdi-api, java-eclipse-sisu-plexus): Install from pom file.
* gnu/packages/maven.scm (maven-resolver-api, maven-resolver-spi)
(maven-resolver-util, maven-resolver-connector-basic, maven-resolver-impl)
(java-plexus-utils, maven-artifact, maven-model, maven-builder-support)
(maven-settings, maven-settings-builder, maven-model-builder)
(maven-repository-metadata, maven-resolver-provider, maven-plugin-api)
(maven-core, maven-embedder, maven-compat): Install from pom file.
 2020-07-17 04:14:45 +02:00
Julien Lepiller
968bb68275
gnu: java-httpcomponents-httpclient: Update to 4.5.12. 
* gnu/packages/java.scm (java-httpcomponents-httpclient): Update to
4.5.12.
 2020-07-17 04:14:37 +02:00
Julien Lepiller
ff0496d054
gnu: maven-wagon-provider-api: Update to 3.3.4. 
* gnu/packages/maven.scm (maven-wagon-provider-api): Update to 3.3.4.
(maven-wagon-provider-test): Add missing dependency.
 2020-07-17 04:14:21 +02:00
Julien Lepiller
6671d6a14e
gnu: java-plexus-interpolation: Update to 1.26. 
* gnu/packages/java.scm (java-plexus-interpolation): Update to 1.26.
 2020-07-17 04:14:15 +02:00
Julien Lepiller
b8d977b154
gnu: java-bsh: Unbundle third-party libraries. 
* gnu/packages/java.scm (java-bsh)[source]: Remove bundled jar files.
 2020-07-17 04:13:51 +02:00
Julien Lepiller
aabaac7d85
gnu: Add javacc-3. 
* gnu/packages/java.scm (javacc-3): New variable.
 2020-07-17 04:13:41 +02:00
Julien Lepiller
02ed96dccf
gnu: java-plexus-archiver: Update to 4.2.2. 
* gnu/packages/java.scm (java-plexus-archiver): Update to 4.2.2.
(java-plexus-container-default, java-commons-compress)
(java-geronimo-xbean-reflect): Install from pom file.
(java-guava): Install from pom
[source]: Use git source instead of generated source jar.
* gnu/packages/java-compression.scm (java-xz, java-iq80-snappy): Install
from pom.
 2020-07-17 04:12:43 +02:00
Julien Lepiller
ae91309642
gnu: java-plexus-classworlds: Update to 2.6.0. 
* gnu/packages/java.scm (java-plexus-classworlds): Update to 2.6.0.
 2020-07-17 04:12:25 +02:00
Julien Lepiller
79265a4598
gnu: java-plexus-io: Update to 3.2.0. 
* gnu/packages/java.scm (java-plexus-io): Update to 3.2.0.
(java-commons-io)[arguments]: Install from pom file.
 2020-07-17 04:12:17 +02:00
Julien Lepiller
2ddf13aed2
gnu: Add java-plexus-utils-3.3.0. 
* gnu/packages/java.scm (java-plexus-utils-3.3.0): New variable.
 2020-07-17 04:12:15 +02:00
Julien Lepiller
b3971a5c47
gnu: java-plexus-utils: Update to 3.2.1. 
* gnu/packages/java.scm (java-plexus-utils): Update to 3.2.1.
 2020-07-17 04:12:13 +02:00
Julien Lepiller
ba03666d29
gnu: java-commons-codec: Update to 1.14. 
* gnu/packages/java.scm (java-commons-codec): Update to 1.14.
 2020-07-17 04:12:11 +02:00
Julien Lepiller
b916b6382e
gnu: java-commons-lang3: Update to 3.9. 
* gnu/packages/java.scm (java-commons-lang3): Update to 3.9.
 2020-07-17 04:12:07 +02:00
Julien Lepiller
c2cef73132
gnu: Add maven-components-parent-pom-21. 
* gnu/packages/maven-parent-pom.scm (maven-components-parent-pom-21):
New variable.
 2020-07-17 04:12:04 +02:00
Julien Lepiller
b5710bbc4a
gnu: Add maven-components-parent-pom-22. 
* gnu/packages/maven-parent-pom.scm (maven-components-parent-pom-22):
New variable.
 2020-07-17 04:12:03 +02:00
Julien Lepiller
40b20507d1
gnu: Add maven-plugins-pom-23. 
* gnu/packages/maven-parent-pom.scm (maven-plugins-pom-23): New variable.
 2020-07-17 04:11:57 +02:00
Julien Lepiller
7b28106e91
gnu: add maven-parent-pom-31. 
* gnu/packages/maven-parent-pom.scm (maven-parent-pom-31): New variable.
 2020-07-17 04:11:55 +02:00
Julien Lepiller
8226c928c0
gnu: Add maven-parent-pom-22. 
* gnu/packages/maven-parent-pom.scm (maven-parent-pom-22): New variable.
 2020-07-17 04:11:53 +02:00
Julien Lepiller
cfcb259910
gnu: Add maven-parent-pom-15. 
* gnu/packages/maven.scm (maven-parent-pom-15): New variable.
 2020-07-17 04:11:51 +02:00
Julien Lepiller
9ef1ce0166
gnu: Add maven-parent-pom-27. 
* gnu/packages/maven.scm (maven-parent-pom-27): New variable.
 2020-07-17 04:11:50 +02:00
Julien Lepiller
0e1cca3031
gnu: Add maven-parent-pom-30. 
* gnu/packages/maven-parent-pom.scm (maven-parent-pom-30): New variable.
 2020-07-17 04:11:48 +02:00
Julien Lepiller
c68f832b2d
gnu: Add maven-parent-pom-33. 
* gnu/packager/maven-parent-pom.scm (maven-parent-pom-33): New variable.
 2020-07-17 04:11:46 +02:00
Julien Lepiller
8c375b779d
gnu: Add plexus-parent-pom-6.1. 
* gnu/packages/maven-parent-pom.scm (plexus-parent-pom-6.1): New
variable.
 2020-07-17 04:11:44 +02:00
Julien Lepiller
c460bb176b
gnu: add plexus-parent-pom-5.1. 
* gnu/packages/maven-parent-pom.scm (plexus-parent-pom-5.1): New
variable.
 2020-07-17 04:11:42 +02:00
Julien Lepiller
1350f558ef
gnu: Add plexus-parent-pom-4.0. 
* gnu/packages/maven-parent-pom.scm (plexus-parent-pom-4.0): New
variable.
 2020-07-17 04:11:40 +02:00
Julien Lepiller
6969a575e4
gnu: Add plexus-parent-pom-3.1. 
* gnu/packages/maven-parent-pom.scm (plexus-parent-pom-3.1): New
variable.
 2020-07-17 04:11:38 +02:00
Julien Lepiller
744979f926
gnu: Add java-sonatype-oss-parent-pom-9. 
* gnu/packages/maven-parent-pom.scm (java-sonatype-oss-parent-pom-9): New
variable.
 2020-07-17 04:11:36 +02:00
Julien Lepiller
0dd0bb78a8
gnu: Add java-sonatype-oss-parent-pom-7. 
* gnu/packages/maven-parent-pom.scm (java-sonatype-oss-parent-pom-7):
New variable.
 2020-07-17 04:11:35 +02:00
Julien Lepiller
bdec75a25e
gnu: Add java-sonatype-spice-parent-pom-12. 
* gnu/packages/maven-parent-pom.scm (java-sonatype-spice-parent-pom-12):
New variable.
 2020-07-17 04:11:33 +02:00
Julien Lepiller
03e792108c
gnu: Add java-sonatype-spice-parent-pom-17. 
* gnu/packages/maven-parent-pom.scm (java-sonatype-spice-parent-pom-17):
New variable.
 2020-07-17 04:11:31 +02:00
Julien Lepiller
a98ff9b8ab
gnu: Add java-sonatype-spice-parent-pom-15. 
* gnu/packages/maven-parent-pom.scm (java-sonatype-spice-parent-pom-15):
New variable.
 2020-07-17 04:11:29 +02:00
Julien Lepiller
94f2bac18e
gnu: Add java-sonatype-forge-parent-pom-10. 
* gnu/packages/maven-parent-pom.scm (java-sonatype-forge-parent-pom-10):
New variable.
 2020-07-17 04:11:28 +02:00
Julien Lepiller
95e686955b
gnu: Add java-sonatype-forge-parent-pom-6. 
* gnu/packages/maven-parent-pom.scm (java-sonatype-forge-parent-pom-6):
New variable.
 2020-07-17 04:11:26 +02:00
Julien Lepiller
a1694cf323
gnu: Add java-sonatype-forge-parent-pom-5. 
* gnu/packages/maven-parent-pom.scm (java-sonatype-forge-parent-pom-5):
New variable.
 2020-07-17 04:11:22 +02:00
Julien Lepiller
ad9df5110c
gnu: add java-sonatype-forge-parent-pom-4. 
* gnu/packages/maven-parent-pom.scm (java-sonatype-forge-parent-pom-4):
New variable.
 2020-07-17 04:11:16 +02:00
Julien Lepiller
16466a5d7f
gnu: Add java-weld-parent-pom. 
* gnu/packages/maven-parent-pom.scm (java-weld-parent-pom): New
variable.
 2020-07-17 04:11:14 +02:00
Julien Lepiller
40448a0236
gnu: Add apache-commons-parent-pom-50. 
* gnu/packages/maven-parent-pom.scm (apache-commons-parent-pom-50): New
variable.
 2020-07-17 04:11:11 +02:00
Julien Lepiller
568ea5315b
gnu: Add apache-commons-parent-pom-48. 
* gnu/packages/maven-parent-pom.scm (apache-commons-parent-pom-48): New
variable.
 2020-07-17 04:11:09 +02:00
Julien Lepiller
bd31f1df47
gnu: Add apache-commons-parent-pom-41. 
* gnu/packages/maven-parent-pom.scm (apache-commons-parent-pom-41): New
variable.
 2020-07-17 04:11:07 +02:00
Julien Lepiller
5061658692
gnu: Add apache-commons-parent-pom-39. 
* gnu/packages/maven-parent-pom.scm (apache-commons-parent-pom-39): New
variable.
 2020-07-17 04:11:05 +02:00
Julien Lepiller
a2f64c345e
gnu: Add apache-parent-pom-21. 
* gnu/packages/maven-parent-pom.scm (apache-parent-pom-21): New
variable.
 2020-07-17 04:11:04 +02:00
Julien Lepiller
97de6e0c80
gnu: Add apache-parent-pom-19. 
* gnu/packages/maven-parent-pom.scm (apache-parent-pom-19): New
variable.
 2020-07-17 04:11:02 +02:00
Julien Lepiller
474c61c579
gnu: Add apache-parent-pom-18. 
* gnu/packages/maven-parent-pom.scm (apache-parent-pom-18): New
variable.
 2020-07-17 04:11:01 +02:00
Julien Lepiller
d83b144a6d
gnu: Add apache-parent-pom-17. 
* gnu/packages/maven.scm (apache-parent-pom-17): New variable.
 2020-07-17 04:10:59 +02:00
Julien Lepiller
3eebbff671
gnu: Add apache-parent-pom-16. 
* gnu/packages/maven-parent-pom.scm (apache-parent-pom-16): New
variable.
 2020-07-17 04:10:58 +02:00
Julien Lepiller
67d54abe35
gnu: Add apache-parent-pom-11. 
* gnu/packages/maven-parent-pom.scm (apache-parent-pom-11): New
variable.
 2020-07-17 04:10:57 +02:00
Julien Lepiller
10f8dedf39
gnu: Add apache-parent-pom-6. 
* gnu/packages/maven.scm (apache-parent-pom-6): New variable.
 2020-07-17 04:10:55 +02:00
Julien Lepiller
bef4d92050
gnu: Add apache-parent-pom-13. 
* gnu/packages/maven-parent-pom.scm: New file.
* gnu/local.mk: Add maven-parent-pom.scm.
 2020-07-17 04:10:54 +02:00
Julien Lepiller
fff4fcc4e2
gnu: java-junit: Install from pom file. 
* gnu/packages/java.scm (java-junit)[arguments]: Replace install phase.
(java-hamcrest-core)[arguments]: Replace install phase.
(java-hamcrest-library)[arguments]: Replace install phase.
(java-cisd-jhdf5, java-commons-math3, java-commons-collections4)
(java-commons-io, java-commons-exec-1.1, java-commons-exec)
(java-commons-lang3, java-commons-codec, java-native-access)
(java-native-access-platform, java-hamcrest-all): Change junit and hamcrest
jar location accordingly.
(java-hamcrest-all): Use old install phase of java-hamcrest-core.
* gnu/packages/maths.scm (java-hdf): Change junit and hamcrest jar
location accordingly.
 2020-07-17 04:10:51 +02:00
Julien Lepiller
e0ee843f77
gnu: java-jarjar: unbundle maven-plugin-api. 
* gnu/packages/java.scm (java-jarjar): Unbundle maven-plugin-api.
 2020-07-17 04:10:46 +02:00
Julien Lepiller
29428e10b8
gnu: java-junit: Enable tests. 
* gnu/packages/java.scm (java-junit)[arguments]: Enable tests.
 2020-07-17 04:10:42 +02:00
Julien Lepiller
031516d69a
gnu: Add java-hamcrest-library. 
* gnu/packages/java.scm (java-hamcrest-library): New variable.
 2020-07-17 04:10:40 +02:00
Julien Lepiller
30b7704a57
gnu: java-asm: Remove dependency on bnd libraries. 
* gnu/packages/java.scm (java-asm): Remove dependency on java-aqute-bndlib
and java-aqute-libg.
(java-slf4j-api-bootstrap, java-aqute-bndlib-bootstrap)
(java-aqute-libg-bootstrap): Remove unused variables.
 2020-07-17 04:10:38 +02:00
Tobias Geerinckx-Rice
5654eef7e9
gnu: Update the LXQt home page. 
* gnu/packages/lxqt.scm (lxqt-build-tools, liblxqt, libsysstat)
(lxqt-about, lxqt-admin, lxqt-config, lxqt-globalkeys)
(lxqt-notificationd, lxqt-openssh-askpass, lxqt-panel, lxqt-policykit)
(lxqt-powermanagement, lxqt-qtplugin, lxqt-runner, lxqt-session)
(lxqt-sudo, lxqt-themes, libfm-qt, pcmanfm-qt, compton-conf, lximage-qt)
(obconf-qt, pavucontrol-qt, qps, qtermwidget, qterminal, screengrab)
(lxqt-archiver, lxqt)[home-page]: Update to a working domain.
 2020-07-17 03:04:41 +02:00
Tobias Geerinckx-Rice
7bb7bb5c9d
gnu: lbzip2: Update to 2.5-0.b6dc48a. 
* gnu/packages/compression.scm (lbzip2): Update to 2.5-0.b6dc48a.
[source]: Use GIT-FETCH and GIT-FILE-NAME.  Remove snippet.
[arguments]: Add ‘unpack-gnulib’ and custom bootstrap phase.
[native-inputs]: Add autoconf, automake, gnulib, and perl.
[home-page]: Use source repository.
 2020-07-17 03:04:41 +02:00
Tobias Geerinckx-Rice
f5d88758be
gnu: ghc-uniplate: Use a working home page. 
* gnu/packages/haskell-xyz.scm (ghc-uniplate)[home-page]: Update.
 2020-07-17 03:04:40 +02:00
Tobias Geerinckx-Rice
f1841ccf46
gnu: ghc-missingh: Update home page. 
* gnu/packages/haskell-xyz.scm (ghc-missingh)[home-page]: Update.
 2020-07-17 03:04:40 +02:00
Tobias Geerinckx-Rice
33c154d6a5
gnu: corkscrew: Use git source. 
* gnu/packages/ssh.scm (corkscrew)[source]: Use GIT-FETCH and GIT-FILE-NAME.
[arguments]: Adapt to changed README file name.
[home-page]: Switch to a working URI.
 2020-07-17 03:04:40 +02:00
Diego Nicola Barbato
f49eb9f997
gnu: freeorion: Build with boost-with-python2. 
* gnu/packages/games.scm (freeorion)[inputs]: Replace boost with
boost-with-python2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-07-17 02:02:30 +02:00
Michael Rohleder
9ba8cb43b9
gnu: emacs-helm-projectile: Update to 1.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm-projectile): Update to 1.0.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-07-17 01:55:58 +02:00
Michael Rohleder
4226c1f709
gnu: emacs-projectile: Update to 2.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-projectile): Update to 2.2.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-07-17 01:54:58 +02:00
Timotej Lazar
52edd7eddb
gnu: godot: Update to 3.2.2. 
* gnu/packages/game-development.scm (godot): Update to 3.2.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-07-17 01:53:28 +02:00
Timotej Lazar
0fc715f971
gnu: hedgewars: Install desktop icon. 
* gnu/packages/games.scm (hedgewars)[arguments]: Add ‘install-icon’ phase.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-07-17 01:51:56 +02:00
Diego Nicola Barbato
ba7a63da48
gnu: emacs-exwm: Fix fullscreen states. 
* gnu/packages/patches/emacs-exwm-fix-fullscreen-states.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs-xyz.scm (emacs-exwm)[source]: Use it.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-07-17 01:18:00 +02:00
Julien Lepiller
074814fe57
gnu: keepassxc: Set QT_PLUGIN_PATH. 
* gnu/packages/password-utils.scm (keepassxc): Wrap program to set
QT_PLUGIN_PATH for svg icons to show properly.
 2020-07-17 00:10:47 +02:00
Marius Bakke
9a62282755
services: Add ganeti. 
* gnu/services/ganeti.scm, gnu/tests/ganeti.scm: New files.
* doc/guix.texi (Virtualization Services): Document the Ganeti services.
 2020-07-16 21:51:44 +02:00
Marius Bakke
7b572c5f19
gnu: Add ganeti-instance-debootstrap. 
* gnu/packages/virtualization.scm (ganeti-instance-debootstrap): New public variable.
 2020-07-16 21:51:44 +02:00
Marius Bakke
ecd5db37ff
gnu: Add ganeti-instance-guix. 
* gnu/packages/virtualization.scm (ganeti-instance-guix): New public variable.
 2020-07-16 21:51:44 +02:00
Marius Bakke
72a91d74ce
gnu: Add ganeti. 
* gnu/packages/virtualization.scm (system->qemu-target, ganeti): New variables.
* gnu/packages/patches/ganeti-deterministic-manual.patch,
gnu/packages/patches/ganeti-disable-version-symlinks.patch,
gnu/packages/patches/ganeti-drbd-compat.patch,
gnu/packages/patches/ganeti-haskell-pythondir.patch,
gnu/packages/patches/ganeti-os-disk-size.patch,
gnu/packages/patches/ganeti-preserve-PYTHONPATH.patch,
gnu/packages/patches/ganeti-shepherd-master-failover.patch,
gnu/packages/patches/ganeti-shepherd-support.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2020-07-16 21:51:43 +02:00
Mark H Weaver
851cc11cd1
gnu: linux-libre: Update to 5.4.52. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.52.
(linux-libre-5.4-pristine-source): Update hash.
(linux-libre-5.4-source): Remove %linux-libre-fix-atheros-9271-patch.
 2020-07-16 15:43:24 -04:00
Mark H Weaver
d269422ec1
gnu: linux-libre@5.7: Update to 5.7.9. 
* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.9.
(linux-libre-5.7-pristine-source): Update hash.
(linux-libre-5.7-source): Remove %linux-libre-fix-atheros-9271-patch.
 2020-07-16 15:43:18 -04:00
Mark H Weaver
7089a45aa1
gnu: linux-libre@4.19: Update to 4.19.133. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.133.
(linux-libre-4.19-pristine-source): Update hash.
(linux-libre-4.19-source): Remove %linux-libre-fix-atheros-9271-patch.
 2020-07-16 15:43:11 -04:00
Tobias Geerinckx-Rice
7fc2ba2a2c
gnu: kyotocabinet: Use HTTPS. 
* gnu/packages/databases.scm (kyotocabinet)[source, home-page]:
Use HTTPS.
 2020-07-16 20:12:07 +02:00
Tobias Geerinckx-Rice
c4944d6c81
gnu: java-xmlunit: Use HTTPS home page. 
* gnu/packages/java.scm (java-xmlunit)[home-page]: Use HTTPS.
 2020-07-16 20:12:07 +02:00
Tobias Geerinckx-Rice
69cfb72b38
gnu: libyaml: Use HTTPS. 
* gnu/packages/web.scm (libyaml)[source, home-page]: Use HTTPS.
 2020-07-16 20:12:06 +02:00
Tobias Geerinckx-Rice
fe39c70195
gnu: Use HTTPS for mdc-berlin.de home pages. 
* gnu/packages/bioinformatics.scm (r-genomation, r-genomationdata, pigx-rnaseq)
(pigx-chipseq, pigx-bsseq, pigx-scrnaseq, pigx)[home-page]: Use HTTPS.
 2020-07-16 20:12:06 +02:00
Tobias Geerinckx-Rice
c980589260
gnu: Use HTTPS for biojava.org home pages. 
* gnu/packages/bioinformatics.scm (java-biojava-core)
(java-biojava-phylo, java-biojava-alignment, java-biojava-phylo-4.0)
(java-biojava-alignment-4.0)[home-page]: Use HTTPS.
 2020-07-16 20:12:06 +02:00
Tobias Geerinckx-Rice
2ae03bf631
gnu: jack@0.125.0: Update URIs. 
gnu/packages/audio.scm (jack-1)[source]: Use a working mirror.
[home-page]: Use HTTPS.
 2020-07-16 20:12:06 +02:00
Tobias Geerinckx-Rice
00a34333bb
gnu: Use HTTPS for igraph.org. 
* gnu/packages/graph.scm (igraph, r-igraph)[home-page]: Use HTTPS.
 2020-07-16 20:12:06 +02:00
Tobias Geerinckx-Rice
d48b5c8af7
gnu: ghc-pandoc-types: Use HTTPS home page. 
* gnu/packages/haskell-xyz.scm (ghc-pandoc-types)[home-page]: Use HTTPS.
 2020-07-16 20:12:06 +02:00
Tobias Geerinckx-Rice
1467ca6829
gnu: Use HTTPS for www.yesodweb.com. 
* gnu/packages/haskell-web.scm (ghc-css-text, ghc-yesod-persistent)
[home-page]: Use HTTPS.
 2020-07-16 20:12:06 +02:00
Tobias Geerinckx-Rice
702a101257
gnu: Use HTTPS for github.com (and subdomains) home pages. 
* gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and
follow permanent redirection.
* gnu/packages/check.scm (python-codecov, python-nosexcover)
[home-page]: Likewise.
* gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr)
[home-page]: Likewise.
* gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1)
(rust-objc-0.2, rust-objc-exception-0.1)
(rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0)
(rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1)
[home-page]: Likewise.
* gnu/packages/finance.scm (ledger-agent, keepkey-agent)
[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-tasty-expected-failure)
[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp)
(ghc-warp-tls)[home-page]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags)
(ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir)
(ghc-pretty-show)[home-page]: Likewise.
* gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise.
* gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise.
* gnu/packages/linux.scm (procenv)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd)
(python-pycares)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-progressbar33, python-whatever)
(python-funcy)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby)
(ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise.
 2020-07-16 20:12:06 +02:00
Tobias Geerinckx-Rice
228d290106
gnu: Update Haskell Wiki URIs. 
* gnu/packages/haskell-web.scm (ghc-hxt-regex-xmlschema)[home-page]:
Use HTTPS and follow permanent redirection.
* gnu/packages/haskell-xyz.scm (ghc-alsa-core, ghc-base-unicode-symbols)
(ghc-colour, ghc-data-accessor, ghc-data-accessor-transformers)
(ghc-gluraw, ghc-glut, ghc-gnuplot, ghc-haddock-test, ghc-opengl)
(ghc-openglraw, ghc-storablevector)[home-page]: Likewise.
 2020-07-16 20:12:06 +02:00
Tobias Geerinckx-Rice
70e1199c0d
gnu: bombadillo: Use HTTPS home page. 
* gnu/packages/web-browsers.scm (bombadillo)[home-page]: Use HTTPS.
 2020-07-16 20:12:05 +02:00
Tobias Geerinckx-Rice
3720a6f847
gnu: lsof: Use HTTPS home page. 
* gnu/packages/lsof.scm (lsof)[home-page]: Use HTTPS.
 2020-07-16 20:12:05 +02:00
Tobias Geerinckx-Rice
c4ccf2db62
gnu: lirc: Use HTTPS home page. 
Also add a missing copyright line for an obvious nckx phase.

* gnu/packages/lirc.scm (lirc)[home-page]: Use HTTPS.
 2020-07-16 20:12:05 +02:00
Tobias Geerinckx-Rice
2c73599586
gnu: lv2: Use HTTPS. 
* gnu/packages/audio.scm (lv2)[source, home-page]: Use HTTPS.
 2020-07-16 20:12:05 +02:00
Guillaume Le Vaillant
b736e9ba2c
gnu: Add cl-opticl. 
* gnu/packages/lisp-xyz.scm (sbcl-opticl, cl-opticl): New variables.
 2020-07-16 19:47:43 +02:00
Guillaume Le Vaillant
b0e7bc35c4
gnu: Add cl-pngload. 
* gnu/packages/lisp-xyz.scm (sbcl-pngload, cl-pngload, ecl-pngload): New
  variables.
 2020-07-16 19:43:41 +02:00
Guillaume Le Vaillant
5dff9687c9
gnu: Add cl-zpb-exif. 
* gnu/packages/lisp-xyz.scm (sbcl-zpb-exif, cl-zpb-exif, ecl-zpb-exif): New
  variables.
 2020-07-16 19:13:17 +02:00
Guillaume Le Vaillant
242bd80793
gnu: Add cl-3bz. 
* gnu/packages/lisp-xyz.scm (sbcl-3bz, cl-3bz, ecl-3bz): New variables.
 2020-07-16 19:02:09 +02:00
Guillaume Le Vaillant
0f44f63ca2
gnu: Add cl-mmap. 
* gnu/packages/lisp-xyz.scm (sbcl-mmap, cl-mmap, ecl-mmap): New variables.
 2020-07-16 18:45:42 +02:00
Guillaume Le Vaillant
1c1b0532d1
gnu: Add cl-retrospectiff. 
* gnu/packages/lisp-xyz.scm (sbcl-retrospectiff, cl-retrospectiff,
  ecl-retrospectiff): New variables.
 2020-07-16 18:12:39 +02:00
Guillaume Le Vaillant
fc748ff067
gnu: Add cl-opticl-core. 
* gnu/packages/lisp-xyz.scm (sbcl-opticl-core, cl-opticl-core,
  ecl-opticl-core): New variables.
 2020-07-16 17:58:21 +02:00
Guillaume Le Vaillant
ec2c73b8ed
gnu: Add cl-freetype2. 
* gnu/packages/lisp-xyz.scm (sbcl-freetype2, cl-freetype2, ecl-freetype2): New
  variables.
 2020-07-16 17:48:57 +02:00
Guillaume Le Vaillant
7387c090b0
gnu: Add cl-skippy. 
* gnu/packages/lisp-xyz.scm (sbcl-skippy, cl-skippy, ecl-skippy): New
  variables.
 2020-07-16 17:20:13 +02:00
Guillaume Le Vaillant
556daf642a
gnu: Add cl-deflate. 
* gnu/packages/lisp-xyz.scm (sbcl-deflate, cl-deflate, ecl-deflate): New
  variables.
 2020-07-16 17:08:27 +02:00
Guillaume Le Vaillant
31c67a8525
gnu: Add cl-com.gigamonkeys.binary-data. 
* gnu/packages/lisp-xyz.scm (sbcl-com.gigamonkeys.binary-data,
  cl-com.gigamonkeys.binary-data, ecl-com.gigamonkeys.binary-data): New
  variables.
 2020-07-16 16:58:42 +02:00
Guillaume Le Vaillant
2020a0567b
gnu: Add cl-tga. 
* gnu/packages/lisp-xyz.scm (sbcl-tga, cl-tga, ecl-tga): New variables.
 2020-07-16 16:48:25 +02:00
Ricardo Wurmus
d57ce2024b
gnu: r-quantreg: Update to 5.61. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.61.
[propagated-inputs]: Add r-conquer.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus
c4dfd2bf62
gnu: r-r-rsp: Update to 0.44.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.44.0.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus
c85c85d67c
gnu: r-tibble: Update to 3.0.3. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.3.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus
9fcf3d92a0
gnu: r-rlang: Update to 0.4.7. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.7.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus
2d2b5d60f8
gnu: r-brms: Update to 2.13.3. 
* gnu/packages/cran.scm (r-brms): Update to 2.13.3.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus
22df7543b1
gnu: r-gamlss: Update to 5.1-7. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.1-7.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus
88804120c3
gnu: r-gamlss-dist: Update to 5.1-7. 
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-7.
 2020-07-16 10:08:06 +02:00
Ricardo Wurmus
2762d722c5
gnu: r-pillar: Update to 1.4.6. 
* gnu/packages/cran.scm (r-pillar): Update to 1.4.6.
[propagated-inputs]: Add r-ellipsis and r-lifecycle.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
4d639b61cf
gnu: r-mice: Update to 3.10.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.10.0.
[propagated-inputs]: Add r-generics.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
df952ca338
gnu: r-broom: Update to 0.7.0. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.0.
[propagated-inputs]: Remove r-nlme and r-reshape2; add r-ellipsis, r-glue, and
r-rlang.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
b7f051db14
gnu: r-rhdf5lib: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.1.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
82eafe32a2
gnu: r-qtl2: Update to 0.22-11. 
* gnu/packages/bioinformatics.scm (r-qtl2): Update to 0.22-11.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
16e16586d2
gnu: r-genomicfeatures: Update to 1.40.1. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.40.1.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
02f3a622e2
gnu: r-summarizedexperiment: Update to 1.18.2. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.18.2.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
a9a912805a
gnu: r-activepathways: Update to 1.0.2. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.2.
[propagated-inputs]: Remove r-metap.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
1a7d1c54d4
gnu: r-rsubread: Update to 2.2.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.4.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
ba663a331b
gnu: Add r-conquer. 
* gnu/packages/cran.scm (r-conquer): New variable.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
021ad446fc
gnu: r-cairo: Update to 1.5-12.2. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.2.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
79f7cd99da
gnu: r-gplots: Update to 3.0.4. 
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.4.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
f12fd76912
gnu: r-xml: Update to 3.99-0.4. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.4.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
f7b05fb978
gnu: r-tibble: Update to 3.0.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.2.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
59b88ab39e
gnu: r-svglite: Update to 1.2.3.2. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.3.2.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
0091d815ad
gnu: r-rstan: Update to 2.21.1. 
* gnu/packages/cran.scm (r-rstan): Update to 2.21.1.
[propagated-inputs]: Add r-rcppparallel and r-v8.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
67462c7be9
gnu: r-loo: Update to 2.3.0. 
* gnu/packages/cran.scm (r-loo): Update to 2.3.0.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
3cafe807b2
gnu: r-rstantools: Update to 2.1.1. 
* gnu/packages/cran.scm (r-rstantools): Update to 2.1.1.
[propagated-inputs]: Add r-rcppparallel.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
8aff0a206c
gnu: r-iheatmapr: Update to 0.5.0. 
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.5.0.
[propagated-inputs]: Remove r-plyr and r-s4vectors.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
e9d906748d
gnu: r-quanteda: Update to 2.1.0. 
* gnu/packages/cran.scm (r-quanteda): Update to 2.1.0.
[propagated-inputs]: Add r-digest.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
ed8c14589c
gnu: r-nonnest2: Update to 0.5-5. 
* gnu/packages/cran.scm (r-nonnest2): Update to 0.5-5.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
215475907a
gnu: r-future: Update to 1.18.0. 
* gnu/packages/cran.scm (r-future): Update to 1.18.0.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
e1bfb22e6c
gnu: r-doby: Update to 4.6.7. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.7.
[propagated-inputs]: Add r-dplyr and r-ggplot2.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
fbd4582a91
gnu: r-cubature: Update to 2.0.4.1. 
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.1.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
1fdd9ebf77
gnu: r-getoptlong: Update to 1.0.2. 
* gnu/packages/cran.scm (r-getoptlong): Update to 1.0.2.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
1b5c263bfc
gnu: r-rcpp: Update to 1.0.5. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.5.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
b80f141f86
gnu: r-delayedmatrixstats: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.1.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
15597255e6
gnu: r-rhdf5: Update to 2.32.2. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.2.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
2d9c897dd0
gnu: r-variancepartition: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.2.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
f5340e0045
gnu: Add tao. 
* gnu/packages/patches/tao-add-missing-headers.patch,
gnu/packages/patches/tao-fix-parser-types.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (tao): New variable.
 2020-07-16 10:07:57 +02:00
Tobias Geerinckx-Rice
03f9a8c35b
Revert "gnu: rust: Add SSL native search paths." 
This reverts commit ba1e4ce256.
 2020-07-15 23:22:18 +02:00
Leo Famulari
7233b19fde
gnu: Transmission: Update to 3.0.0. 
* gnu/packages/bittorrent.scm (transmission): Update to 3.0.0.
[source]: Remove obsolete patch.
* gnu/packages/patches/transmission-CVE-2018-10756.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-07-15 15:38:03 -04:00
Oleg Pykhalov
37fea3c30a
tests: zabbix: Fix typo in comment. 
* gnu/tests/monitoring.scm (run-zabbix-server-test)[test]: Fix typo in
comment.
 2020-07-15 22:15:50 +03:00
Oleg Pykhalov
be6835765b
gnu: zabbix-agentd: Update to 5.0.1. 
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.0.1.
(arguments)[#:phases]<install-front-end>: Update front-end path.
 2020-07-15 22:15:49 +03:00
Tobias Geerinckx-Rice
209bfe60ee
gnu: bind: Update to 9.16.5. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.5.
 2020-07-15 21:11:11 +02:00
Marius Bakke
1507636906
gnu: python-tinycss2: Fix test failure. 
Fixes <https://bugs.gnu.org/42372>.
Reported by Michael Rohleder <mike@rohleder.de>.

* gnu/packages/patches/python-tinycss2-flake8-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-web.scm (python-tinycss2)[source](patches): New field.
 2020-07-15 20:29:26 +02:00
Marius Bakke
dec0217f6e
gnu: python-shiboken-2, python-pyside-2: Update to 5.14.2.3. 
* gnu/packages/patches/qtbase-absolute-runpath.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/qt.scm (qtbase/next): New variable.
* gnu/packages/qt.scm (python-shiboken-2): Update to 5.14.2.3.
[source](uri): Adjust for tarball rename.
[inputs]: Use the default CLANG-TOOLCHAIN.
(python-pyside-2)[inputs]: Likewise.
(python-pyside-2-tools)[inputs]: Change from QTBASE to QTBASE/NEXT.
 2020-07-15 20:08:10 +02:00
Tobias Geerinckx-Rice
b514478cb9
gnu: gparted: Use the Glib-or-GTK build system. 
Fixes <https://issues.guix.gnu.org/38544>.

* gnu/packages/disk.scm (gparted)[build-system]: Use
glib-or-gtk-build-system.
 2020-07-15 19:41:40 +02:00
Tobias Geerinckx-Rice
7af2b55d7b
gnu: protobuf: Update to 3.12.3. 
* gnu/packages/protobuf.scm (protobuf): Update to 3.12.3.
 2020-07-15 19:41:39 +02:00
Tobias Geerinckx-Rice
ba1e4ce256
gnu: rust: Add SSL native search paths. 
* gnu/packages/rust.scm (rust-1.19)[native-search-paths]: Add entries
for SSL_CERT_DIR and SSL_CERT_FILE.

Reported by Kimapr[m] in #guix.
 2020-07-15 19:41:39 +02:00
Tobias Geerinckx-Rice
7e3b537c76
gnu: Consistently use license: prefix in (gnu packages mail). 
* gnu/packages/mail.scm: Don't #:select arbitrary variables from
(guix licenses).
(anubis, mailutils, nullmailer, fetchmail, mutt, neomutt, gmime)
(bogofilter, offlineimap, emacs-mew, mu, alot, notifymuch, notmuch)
(python-notmuch, muchsync, getmail, libetpan, compface, claws-mail)
(msmtp, exim, dovecot, dovecot-trees, dovecot-libsodium-plugin, isync)
(perl-email-abstract, perl-email-address, perl-email-address-xs)
(perl-email-date-format, perl-email-messageid, perl-email-mime)
(perl-email-mime-contenttype, perl-email-mime-encodings)
(perl-email-sender, perl-email-simple, libesmtp, esmtp, fdm, procmail)
(khard, perl-mail-spf, perl-mail-authenticationresults, perl-mail-dkim)
(dkimproxy, mb2md, mpop, mhonarc, sendmail, opensmtpd, opensmtpd-extras)
(python-mailmanclient, python2-django-mailman3, postorius, swaks, alpine)
(balsa, afew, pan, urlscan, tnef, mumi, ytnef, public-inbox, sylpheed)
[licenses]: Use a license: prefix instead.
 2020-07-15 19:41:39 +02:00
Tobias Geerinckx-Rice
4fdf4b6cfa
gnu: opensmtpd-extras: Update to 6.7.1. 
* gnu/packages/mail.scm (opensmtpd-extras): Update to 6.7.1.
[native-inputs]: Remove bison, groff, automake, and autoconf.
[inputs]: Remove libasr, perl, lua, and linux-pam.  Add mysql.
[arguments]: Remove obsolete or ineffective options.
[license]: Update.
 2020-07-15 19:41:39 +02:00
Tobias Geerinckx-Rice
6422615fc9
gnu: opensmtpd-extras: Don't use NAME in source URI. 
* gnu/packages/mail.scm (opensmtpd-extras)[source]: Hard-code NAME.
 2020-07-15 19:41:39 +02:00
Ludovic Courtès
d7e9e0bbc9
system: 'operating-system-root-file-system' raises upon missing root. 
* gnu/system.scm (operating-system-root-file-system): Raise when 'find'
returns #f.
 2020-07-15 01:36:24 +02:00
Ludovic Courtès
9e12da319b
system: Add 'location' field to <operating-system>. 
This allows error messages to include source location info.

* gnu/system.scm (<operating-system>)[location]: New field.
 2020-07-15 01:36:24 +02:00
Ludovic Courtès
b91a73a6a4
services: Add 'system-provenance' procedure. 
* gnu/services.scm (sexp->channel, system-provenance): New procedures.
* guix/scripts/system.scm (sexp->channel): Remove.
(display-system-generation): Use 'system-provenance' instead of parsing
the "provenance" file right here.
 2020-07-15 01:36:24 +02:00
Marius Bakke
0a72157271
gnu: Remove python2-pywavelets. 
This package no longer supports Python 2 since the update in
501d89d707 and has no dependents.

* gnu/packages/python-xyz.scm (python2-pywavelets): Remove variable.
 2020-07-14 22:01:35 +02:00
Marius Bakke
f5e3f02fdd
gnu: python-pynacl: Update to 1.4.0. 
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.4.0.
[source](snippet): Adjust to fix spurious build requirement.
[arguments]: Add #:modules.  Replace check phase with custom pytest invocation.
 2020-07-14 21:41:39 +02:00
Marius Bakke
2008b8b7af
gnu: python-simplejson: Update to 3.17.0. 
* gnu/packages/python-xyz.scm (python-simplejson): Update to 3.17.0.
 2020-07-14 21:41:39 +02:00
Marius Bakke
784dadc0f7
gnu: python-paramiko: Update to 2.7.1. 
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.7.1.
 2020-07-14 21:41:38 +02:00
Marius Bakke
ec6ee7d72e
gnu: python-bitarray: Update to 1.4.0. 
* gnu/packages/python-xyz.scm (python-bitarray): Update to 1.4.0.
 2020-07-14 21:41:38 +02:00
Marius Bakke
3b4bb631c3
gnu: python-pycurl: Update to 7.43.0.5. 
* gnu/packages/python-web.scm (python-pycurl): Update to 7.43.0.5.
 2020-07-14 21:41:38 +02:00
Marius Bakke
007af2fb15
gnu: python-bottle: Update to 0.12.18. 
* gnu/packages/python-web.scm (python-bottle): Update to 0.12.18.
 2020-07-14 21:41:38 +02:00
Marius Bakke
d89266edf7
gnu: virt-manager: Remove unused input. 
* gnu/packages/virtualization.scm (virt-manager)[inputs]: Remove PYTHON-IPADDRESS.
 2020-07-14 21:41:38 +02:00
Marius Bakke
3ad866c8e4
gnu: python-txtorcon: Remove unused input. 
* gnu/packages/python-crypto.scm (python-txtorcon)[propagated-inputs]: Remove
PYTHON-IPADDRESS.
 2020-07-14 21:41:38 +02:00
Marius Bakke
34fa5c0532
gnu: silkaj: Remove unused input. 
* gnu/packages/finance.scm (silkaj)[inputs]: Remove PYTHON-IPADDRESS.
 2020-07-14 21:41:38 +02:00
Marius Bakke
01655843e2
gnu: python-docker-py: Remove unused input. 
* gnu/packages/docker.scm (python-docker-py)[inputs]: Remove PYTHON-IPADDRESS.
 2020-07-14 21:41:37 +02:00
Nicolas Goaziou
7c86ef098d
gnu: rust-xdg-2.2: Fix typo and indentation. 
* gnu/packages/crates-io.scm (rust-xdg-2.2): Fix indentation.
[description]: Add missing final dot.
 2020-07-14 15:01:43 +02:00
Nicolas Goaziou
8a3d041698
gnu: flightgear: Update to 2018.3.5. 
* gnu/packages/games.scm (flightgear):
(simgear): Update to 2018.3.5.
 2020-07-14 14:49:59 +02:00
Tobias Geerinckx-Rice
c465980220
gnu: ppsspp: Name git checkouts. 
* gnu/packages/emulators.scm (ppsspp)[inputs]: Use GIT-FILE-NAME for
in-line git origins.
 2020-07-14 13:10:38 +02:00
Nicolas Goaziou
8615bcbe20
gnu: Add emacs-counsel-notmuch. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-notmuch): New variable.
 2020-07-14 11:58:13 +02:00
Morgan Smith
9e43129bf8
gnu: Add emacs-flycheck-ledger. 
* gnu/packages/emacs-xyz.scm (emacs-flycheck-ledger): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-07-14 11:13:15 +02:00
Morgan Smith
edda093807
gnu: Add emacs-literate-calc-mode. 
* gnu/packages/emacs-xyz.scm (emacs-literate-calc-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-07-14 11:10:00 +02:00
Morgan Smith
3c27256c9b
gnu: Add emacs-org-drill. 
* gnu/packages/emacs-xyz.scm (emacs-org-drill): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-07-14 11:00:47 +02:00
Nicolas Goaziou
82990835cd
gnu: emacs-paren-face: Update to 1.0.6. 
* gnu/packages/emacs-xyz.scm (emacs-paren-face): Update to 1.0.6.
[synopsis, description]: Fix typo.
 2020-07-14 10:58:39 +02:00
Efraim Flashner
c319c89573
gnu: font-gnu-freefont: Update to 13.0.03. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 13.0.03.
 2020-07-14 11:05:54 +03:00
Tobias Geerinckx-Rice
8612b073c6
gnu: libzip: Update to 1.7.2. 
* gnu/packages/compression.scm (libzip): Update to 1.7.2.
 2020-07-14 03:57:05 +02:00
Tobias Geerinckx-Rice
1f5cc686b7
gnu: mutt: Update to 1.14.6. 
* gnu/packages/mail.scm (mutt): Update to 1.14.6.
 2020-07-14 03:57:05 +02:00
Tobias Geerinckx-Rice
5cdb25c686
gnu: mbedtls-apache-for-hiawatha: Fix. 
There's already a custom embedtls-apache variant for Hiawatha.
Fix it instead of enabling threading for embedtls-apache.

* gnu/packages/tls.scm (embedtls-for-hiawatha): Fix usage of
SUBSTITUTE-KEYWORD-ARGUMENTS.  Disable -Wformat-signedness.
(embedtls-for-hiawatha): Remove ‘enable-features’ phase.
 2020-07-14 03:57:05 +02:00
Tobias Geerinckx-Rice
9cb208d86b
gnu: usb-modeswitch: Use CC-FOR-TARGET. 
* gnu/packages/usb-modeswitch.scm (usb-modeswitch)[arguments]: Use
CC-FOR-TARGET.
 2020-07-14 03:25:04 +02:00
Tobias Geerinckx-Rice
dbfd804425
gnu: usb-modeswitch: Update to 2.6.1. 
* gnu/packages/usb-modeswitch.scm (usb-modeswitch): Update to 2.6.1.
 2020-07-14 03:25:04 +02:00
Tobias Geerinckx-Rice
765684613f
gnu: hiawatha: Update to 10.11. 
* gnu/packages/web.scm (hiawatha): Update to 10.11.
 2020-07-14 03:25:04 +02:00
Tobias Geerinckx-Rice
927ecd4ebe
gnu: mbedtls-apache: Update to 2.23.0 [security fixes]. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.23.0.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[arguments]: Make source files writable.  Enable threading.
 2020-07-14 03:25:04 +02:00
Tobias Geerinckx-Rice
338f5428d6
gnu: singularity: Refer to egrep. 
* gnu/packages/linux.scm (singularity)[arguments]: Rename
‘patch-reference-to-squashfs-tools’ to ‘patch-references’ and add egrep.

Reported by slimjim on #guix.
 2020-07-14 02:01:32 +02:00
Tobias Geerinckx-Rice
0ac65c8bed
gnu: urlscan: Edit description. 
* gnu/packages/mail.scm (urlscan)[description]: Replace inappropriate
@code{}.
 2020-07-14 02:00:43 +02:00
Tobias Geerinckx-Rice
7d212938ff
gnu: fping: Edit description. 
* gnu/packages/networking.scm (fping)[description]: Fix a typo & mark
it up.
 2020-07-14 02:00:43 +02:00
Nicolas Goaziou
455933c605
gnu: emacs-delight: Update to 1.7. 
* gnu/packages/emacs-xyz.scm (emacs-delight): Update to 1.7.
 2020-07-13 23:36:35 +02:00
Nicolas Goaziou
c9d9392682
gnu: emacs-hyperbole: Update to 7.1.2. 
* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Update to 7.1.2.
 2020-07-13 23:34:41 +02:00
Leo Famulari
9c77cbba3d
gnu: tremc: Update to 0.9.2. 
* gnu/packages/bittorrent.scm (tremc): Update to 0.9.2.
 2020-07-13 16:23:24 -04:00