Commit graph

130551 commits

Author SHA1 Message Date
Ricardo Wurmus
775ae73c3d
gnu: r-laeken: Update to 0.5.3.
* gnu/packages/cran.scm (r-laeken): Update to 0.5.3.

Change-Id: I9ab9a89d88511b80efb912119ec81a24fafceb84
2024-01-30 15:48:55 +01:00
Ricardo Wurmus
f3af65b8d0
gnu: r-sp: Update to 2.1-3.
* gnu/packages/cran.scm (r-sp): Update to 2.1-3.

Change-Id: I111d108e6f144ecfdecf5e5ff94b6b11110a9395
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
5701d13103
gnu: r-powerlaw: Update to 0.80.0.
* gnu/packages/cran.scm (r-powerlaw): Update to 0.80.0.

Change-Id: I1b3c185ac4a8748698fe9218c262620b42f5f06d
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
854d1be754
gnu: r-httpuv: Update to 1.6.14.
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.14.

Change-Id: I1f650010cce97020f7b563adfcd74d7e4dec4981
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
51ca656726
gnu: r-ga: Update to 3.2.4.
* gnu/packages/cran.scm (r-ga): Update to 3.2.4.

Change-Id: I698d5c3eda6598c435fcf37b5e7eaaf5c4e15e63
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
cd9e88c9d0
gnu: r-ggm: Update to 2.5.1.
* gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1.
[propagated-inputs]: Add r-biocmanager.

Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47
2024-01-30 15:48:54 +01:00
Ricardo Wurmus
1541c1bb17
gnu: r-rjava: Update to 1.0-11.
* gnu/packages/cran.scm (r-rjava): Update to 1.0-11.
[source]: Remove snippet.
[arguments]: Remove 'replace-bundled-minified-JavaScript phase.
[native-inputs]: Remove esbuild.

Change-Id: I008810b6919412023fc419d9cbadfea0fe2892bb
2024-01-30 15:48:08 +01:00
Ricardo Wurmus
1bb0d6355c
gnu: r-catdata: Update to 1.2.4.
* gnu/packages/cran.scm (r-catdata): Update to 1.2.4.
[native-inputs]: Add r-knitr.

Change-Id: I7e2873a612f114d7124d5787ff70a8bf0ffefe93
2024-01-30 15:41:54 +01:00
Ricardo Wurmus
c3e2892558
gnu: r-r-devices: Update to 2.17.2.
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.2.
[arguments]: Add 'set-HOME phase.
[native-inputs]: Add r-r-rsp.

Change-Id: Iaaead01e690e95971148ae063aa7af589969d39c
2024-01-30 15:41:07 +01:00
Ricardo Wurmus
67c1a96196
gnu: r-igraph: Update to 2.0.1.1.
* gnu/packages/cran.scm (r-igraph): Update to 2.0.1.1.
[properties]: Tell updater to keep extra native input "which".
[native-inputs]: Add pkg-config and which.

Change-Id: Id56c68784d192f7a3031a338fe63a4c17799c605
2024-01-30 15:36:03 +01:00
Ricardo Wurmus
788657b62d
gnu: r-antiword: Update to 1.3.3.
* gnu/packages/cran.scm (r-antiword): Update to 1.3.3.
[properties]: Tell updater not to remove "antiword" input.
[arguments]: Use G-expression.

Change-Id: Ifdbf80f546b0ab3abfc3b8002ba01b46c9105a1c
2024-01-30 15:31:07 +01:00
Ricardo Wurmus
a4e75305e2
gnu: r-sapa: Patch call of dstebz routine.
* gnu/packages/patches/r-sapa-lapack.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cran.scm (r-sapa)[source]: Add it.

Change-Id: I17354c4e8b3a0f322e17c9a1e17bc37c93630105
2024-01-30 15:16:20 +01:00
Ricardo Wurmus
a874d44053
gnu: r-with-tests: Prevent compression of libraries.
Compression prevents Guix from detecting references.
This is a follow-up to commit ff0d34a29b.

Reported-by: Jonas Freimuth.

* gnu/packages/statistics.scm (r-with-tests)[arguments]: Do not compress
included libraries like "parallel".

Change-Id: I278d19c1504d8ac33a1fc4a941467705a37d574d
2024-01-30 15:16:20 +01:00
Ricardo Wurmus
afe677a623
gnu: r-minimal, r-with-tests: Use G-expressions.
* gnu/packages/statistics.scm (r-minimal, r-with-tests)[arguments]: Use
G-expressions.

Change-Id: I241297444cdb261dfc9901efd73c436a7ccf0acf
2024-01-30 15:16:20 +01:00
Efraim Flashner
9f1ab898c3
gnu: python-scipy: Enable building on more architectures.
* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]:
Only include python-jupytext on systems where it is supported.

Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
2024-01-30 13:43:32 +02:00
Efraim Flashner
7bf98da98b
gnu: libhdate: Fix pkg-config file.
* gnu/packages/calendar.scm (libhdate)[source]: Add snippet to adjust
the pkg-config file to have the correct prefix.

Change-Id: I5273f732a4e4e512057aa8bc1ecd40a81ec7828e
2024-01-30 09:25:32 +02:00
Ian Eure
144c95032e
gnu: emacspeak: Update to 59.0.
* gnu/packages/emacs-xyz.scm (emacspeak): Update to 59.0.
[source]: Switch to git-fetch.

Change-Id: I80e93286fa0de931e85f07c22e050faeaf8d0280
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2024-01-30 00:40:15 +01:00
Kiran Shila
cdadef6409
gnu: Add python-hdbscan.
* gnu/packages/machine-learning.scm (python-hdbscan): New variable.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I13a78dd795490e6d4a8486741e2d5281605b7bb9
2024-01-29 22:58:35 +00:00
Troy Figiel
cde0adaacd
gnu: Add python-pyjanitor.
* gnu/packages/python-science.scm (python-pyjanitor): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-29 21:40:59 +00:00
Troy Figiel
343f4f1d70
gnu: Add python-unyt.
* gnu/packages/python-science.scm (python-unyt): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-29 21:12:12 +00:00
David Thompson
370b79b4f5
gnu: guile-next: Update to commit fb1f5e2.
* gnu/packages/guile.scm (guile-next): Update to commit fb1f5e2.

Change-Id: Ia699bf7bf950b8780366146508eec566a738fb80
2024-01-29 13:38:35 -05:00
Maxim Cournoyer
21e4d6cd69
gnu: mumi: Update to 0.0.8.
* gnu/packages/mail.scm (mumi): Update to 0.0.8.

Change-Id: I0342f3cfb1b257d7beb25a5d9d0732895f88ec35
2024-01-29 10:23:15 -05:00
Maxim Cournoyer
1e0ca05c82
gnu: mumi: Update to 0.0.7.
* gnu/packages/mail.scm (mumi): Update to 0.0.7.

Change-Id: Ia9280574a6774e27f8ab0b4654997b6518c561d2
2024-01-29 10:16:07 -05:00
Maxim Cournoyer
2c5293afff
gnu: lugaru: Apply patch fixing sound.
* gnu/packages/patches/lugaru-fix-sound.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/games.scm (lugaru) [source]: Update source URL.
Apply patch.
[arguments]: Use gexps.
[inputs]: Remove labels and sort.

Change-Id: Iebefc9fc43d3473e51c8c732539e6aa2f14d9f5f
2024-01-28 21:03:31 -05:00
Sharlatan Hellseher
f74789cd54
teams: go: Add more related files to the scope.
* etc/teams.scm (go): Add "gnu/packages/configuration-management.scm",
"gnu/packages/golang-crypto.scm", "gnu/packages/golang-web.scm",
"gnu/packages/syncthing.scm", "gnu/packages/terraform.scm". Sort list
alphabetically.

Change-Id: I56ce5bd21e487e5dbe2d84aa1d83e3239268fb71
2024-01-28 23:40:23 +00:00
Sharlatan Hellseher
9649f5e928
gnu: go-github-com-quic-go-qtls-go1-20: Sort package alphabetically.
* gnu/packages/golang-crypto.scm (go-github-com-quic-go-qtls-go1-20):
Sort package alphabeticaly to consist the style.

Change-Id: Ib9d1e037dc1172b33a80dc4b40c785b53a2a0586
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
ee76f7c279
gnu: go-github-com-99designs-go-keyring: Adjust inputs.
This package does not use GPG or password-store internally and is only
used as a dependency for aws-vault.

* gnu/packages/golang-crypto.scm (go-github-com-99designs-go-keyring):
Swap native-inputs to propagated-inputs.
[propagated-inputs]: Remove gnupg and password-store.

Change-Id: If5f57f656402058960df416bad25a76fa1b70718
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
232ed89d43
gnu: go-github.com-smartystreets-goconvey: Move to (gnu packages golang-check).
* gnu/packages/check.scm (go-github.com-smartystreets-goconvey): Move
from here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: I19d8db6e3b07e1d165396c0498e328b70b2cc760
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
8882af2572
gnu: go-github.com-smartystreets-assertions: Move to (gnu packages golang-check).
* gnu/packages/check.scm (go-github.com-smartystreets-assertions): Move
from here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: Ia90bbe984fe19dd48d9df91364a7ecf2bf8bd37f
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
88fea61aae
gnu: go-github.com-smartystreets-gunit: Move to (gnu packages golang-check).
* gnu/packages/check.scm (go-github.com-smartystreets-gunit): Move from
here ...
* gnu/packages/golang-check.scm: ... to here.

Change-Id: I7204e118f99064027f0e10838d2b44fee212d21d
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
965f6d74ac
gnu: go-github-com-dvsekhvalnov-jose2go: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-dvsekhvalnov-jose2go): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I4c368c9005fd079078726b9165dff380b5092405
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
c94fc0596f
gnu: go-filippo-io-age: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-filippo-io-age): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I4eeadfd946910d56d2441a3469967d681b9e8677
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
a704c8a005
gnu: go-github-com-xanzy-ssh-agent: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-xanzy-ssh-agent): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I9eff26086b2b5e9e53e9271a64060f18b6197b3c
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
d71c57a9a6
gnu: go-github-com-99designs-go-keyring: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-99designs-go-keyring): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I7615759c4cdb66a37b492f11d736b1ccfa6b21f2
2024-01-28 23:21:06 +00:00
Sharlatan Hellseher
1900b75c23
gnu: go-github-com-cespare-xxhash: Move to (gnu packages golang-crypto).
* gnu/packages/syncthing.scm (go-github-com-cespare-xxhash): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/textutils.scm: Add (gnu packages golang-crypto) to used
modules.

Change-Id: Ic72cf6c4770cd3f03cc2e27c3455632ee16e7c09
2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
bf30f46716
gnu: go-github-com-minio-blake2b-simd: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-minio-blake2b-simd): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I096cf86c48b0fdcbf7c5d0b454d45de12018c908
2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
9ae4da0018
gnu: go-github-com-operatorfoundation-ed25519: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-operatorfoundation-ed25519):
Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Ia6a28bb8ad138b921e386f3b4d2dee65b43806d1
2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
4df431e6cb
gnu: go-github-com-gxed-hashland-keccakpg: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-gxed-hashland-keccakpg): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I000004efa349f0d7548003aeecc98c94669662de
2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
c8640466e6
gnu: go-github-com-flynn-noise: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-flynn-noise): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Ie08a20d57424b0ce5fc10ced2a75b29c8aa3fe7d
2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
65a2f158bb
gnu: go-github-com-minio-sha256-simd: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/backup.scm: Add (gnu packages golang-crypto) to used modules.

Change-Id: I4e57a1bee0c7e19a9bb60ce5ff72ccd5e42deea5
2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
06e70201f3
gnu: go-github-com-cloudflare-circl: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-cloudflare-circl): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I6d01b67c795d32387e0b77f1ea53d3a4a8f9939b
2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
857be8fb47
gnu: go-lukechampine-com-blake3: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-lukechampine-com-blake3): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/uucp.scm: Add (gnu packages golang-crypto) to used modules.

Change-Id: I56dba8380317a0f58f92140889611ac3075af2cf
2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
fb63bfb9d5
gnu: go-github-com-btcsuite-btcd-btcec: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-btcsuite-btcd-btcec): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Iea48f1ba1edcf9daf567afc3ed1133f0895a0e99
2024-01-28 23:21:05 +00:00
Sharlatan Hellseher
11f6c41d10
gnu: go-github-com-protonmail-go-crypto: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-protonmail-go-crypto): Move
from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I8ab594fcb5b5b7eeec777a177eb7541ed49dba90
2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
42d10bd201
gnu: go-github-com-emersion-go-pgpmail: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-emersion-go-pgpmail): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/mail.scm: Add (gnu packages golang-crypto) to used
modules.

Change-Id: I6e5d284bb045acb30881c79258573c6c79ecc512
2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
4e3526db41
gnu: go-github-com-rfjakob-eme: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-rfjakob-eme): Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: Ic38d75fd5d3114e246c08abe881fae62e6f9c6b9
2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
7ab2ae0ee7
gnu: go-github-com-aperturerobotics-jacobsa-crypto: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-aperturerobotics-jacobsa-crypto):
Move from here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/file-systems.scm: Add (gnu packages golang-crypto) to
used modules.

Change-Id: I9562a3a3054b7d361758c5e5984891970f191ada
2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
f7ca047b6d
gnu: go-github-com-jcmturner-aescts-v2: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-jcmturner-aescts-v2): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

* gnu/packages/golang-web.scm: Add (gnu packages golang-crypto) to used
modules.

Change-Id: Ie8f74e09ae50db4e4b0c9292d049cc46c033d6a6
2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
ea912634de
gnu: go-github-com-quic-go-qtls-go1-20: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-quic-go-qtls-go1-20): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I28127466419cd798c926b62d160c6e512e5171bd
2024-01-28 23:21:04 +00:00
Sharlatan Hellseher
6dc9ac6461
gnu: go-github-com-gaukas-godicttls: Move to (gnu packages golang-crypto).
* gnu/packages/golang.scm (go-github-com-gaukas-godicttls): Move from
here ...
* gnu/packages/golang-crypto.scm: ... to here.

Change-Id: I19e4a52a213469174ab2a7048abeff6dbf7f715c
2024-01-28 23:21:04 +00:00