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Author SHA1 Message Date
Ricardo Wurmus
cf3a5f51bd
gnu: r-r-filesets: Update to 2.15.1. 
* gnu/packages/cran.scm (r-r-filesets): Update to 2.15.1.

Change-Id: I65b0ead73e5c0b48eb4717d7a35796a5f6ca0c5f
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
353de1f8de
gnu: r-r-huge: Update to 0.10.1. 
* gnu/packages/cran.scm (r-r-huge): Update to 0.10.1.

Change-Id: Ia7a7cceefd816a36fd8c33866e379c5780088c42
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
bd65f7b6af
gnu: r-kableextra: Update to 1.4.0. 
* gnu/packages/cran.scm (r-kableextra): Update to 1.4.0.
[propagated-inputs]: Remove r-glue, r-rvest, and r-webshot.

Change-Id: I54ae752da0b802b0f322c8762d73c3d1519103ee
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
aea3c44027
gnu: r-rcppannoy: Update to 0.0.22. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.22.

Change-Id: I87fde0568881276bec612ae99e95ea5c9c70a3f0
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
b634edeaab
gnu: r-emmeans: Update to 1.10.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.10.0.

Change-Id: I32a041b81e528b8b07068f748a7b9f8186a34a89
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
c12bc9a581
gnu: r-ggridges: Update to 0.5.6. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.6.

Change-Id: Ic0c746f31294f8a4e9668eff6ae7d02c27f64f1c
 2024-01-25 09:43:02 +01:00
Ricardo Wurmus
6064758fdf
gnu: r-conos: Update to 1.5.1. 
* gnu/packages/bioconductor.scm (r-conos): Update to 1.5.1.

Change-Id: If05dea04f6abb3c78504ab46aa052aeb288a7c8c
 2024-01-25 09:43:02 +01:00
Ricardo Wurmus
ee805f86fe
gnu: r-tidyr: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.3.1.

Change-Id: I4b97cbcaad562070440d692a1a5652eb15123516
 2024-01-25 09:43:02 +01:00
Vinicius Monego
ffa73f8ef2
gnu: python-opentsne: Update to 1.0.1. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 1.0.1.

Change-Id: Ic71c3622e9408a21c5bade00228a9af5320c6dce
 2024-01-24 20:02:55 -03:00
Vinicius Monego
b6e3527aae
gnu: python-pymc: Update to 5.10.3. 
* gnu/packages/statistics.scm (python-pymc): Update to 5.10.3.

Change-Id: I7c30e5a487f97415ef3bf7f9c514a5de54dcd611
 2024-01-24 20:02:51 -03:00
Vinicius Monego
90b80796bf
gnu: python-arviz: Update to 0.17.0. 
* gnu/packages/statistics.scm (python-arviz): Update to 0.17.0.

Change-Id: I93112c570010165c888b5e303a3c82d80cda3016
 2024-01-24 20:02:51 -03:00
Vinicius Monego
a4c9766108
gnu: python-xarray-einstats: Update to 0.7.0. 
* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.7.0.

Change-Id: Iddd1fca8c37f05a928d20b90f9f95814f31435b2
 2024-01-24 20:02:51 -03:00
Vinicius Monego
2836325c2b
gnu: python-scikit-rf: Update to 0.31.0. 
* gnu/packages/engineering.scm (python-scikit-rf): Update to 0.31.0.

Change-Id: I5dc8891530d7a7e55a899cfde4f72aecc83ec044
 2024-01-24 20:02:47 -03:00
Roman Scherer
8bee6bb9aa
gnu: guile-fibers: Disable failing tests on aarch64. 
* gnu/packages/guile-xyz.scm (guile-fibers)[arguments]: In
‘disable-some-tests’ phase, disable failing tests on aarch64.

Change-Id: Id05b516a659f641cc7ef01efdaf6cd1f2c735800
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-24 23:28:38 +01:00
Sergey Trofimov
f8e0e5274f
scripts: describe: Support 'channels-sans-intro' format for local checkouts. 
* guix/scripts/describe.scm (%display-checkout-info):
Support 'channels-sans-intro' format.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-24 23:28:38 +01:00
Ludovic Courtès
6cca8f0694
weather: Add ‘-e’. 
* guix/scripts/weather.scm (show-help, %options): Add ‘-e’.
(guix-weather): Handle it.
* doc/guix.texi (Invoking guix weather): Document it.

Change-Id: I6dc97ec2b8226b57be33247b05a34c23b573a64f
 2024-01-24 23:28:38 +01:00
Ludovic Courtès
96c2186a08
services: cuirass: Depend on ‘user-processes’. 
* gnu/services/cuirass.scm (cuirass-shepherd-service)
(cuirass-remote-worker-shepherd-service): Add ‘user-processes’ to the
‘requirement’ field.

Change-Id: Iba087bfd8aaa9b1ef54bcc77d855adc136e18644
 2024-01-24 23:28:38 +01:00
Ludovic Courtès
94abfccde9
services: cuirass: Add ‘configuration’ action. 
* gnu/services/cuirass.scm (cuirass-shepherd-service): Add ‘actions’
field to ‘cuirass’ Shepherd service.

Change-Id: I7feaeebcb89fcd9a1fdbc63f0337e0d63b697793
 2024-01-24 23:28:37 +01:00
Sharlatan Hellseher
8f86cbd5e9
gnu: libnova: Use G-Expressions. 
* gnu/packages/astronomy.scm (libnova): Adjust package style by applying
G-Expressions and fix indention.
[arguments]<#:phases>: Remove trailing #f from lambda.

Change-Id: I63d239464fd3cb166449ef8904b5fd72326cb853
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
f74a8e8ac0
gnu: stackistry: Use G-Expressions. 
* gnu/packages/astronomy.scm (stackistry): Update package style by using
G-Expressions. Apply indention.
[arguments]<#:tests?>: Use it instead of deleting check phase.
<#:phases>: Remove trailing #f from each lambda.

Change-Id: I30f3906719713f0d47dc2049564bc2691ba3cd5d
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
6431cf121d
gnu: libpasastro: Use G-Expressions. 
* gnu/packages/astronomy.scm (libpasastro):
[supported-systems]: Add it.
[arguments]: Rewrite using G-expressions.
[description]: Remove trailing \n.

Change-Id: Ic0e79394be1110566f5481963fdd167985c1a770
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
e586c8189b
gnu: python-stsynphot: Fix build. 
* gnu/packages/astronomy.scm (python-stsynphot): Fix build.
[native-inputs]: Add python-semantic-version.

Change-Id: I72b086c6a0461293c2191e39e25b3c803279bf60
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
884bddc26c
gnu: python-skyfield: Update to 1.47. 
* gnu/packages/astronomy.scm (python-skyfield): Update to 1.47.
[inputs]: Remove python-certifi, python-jplephem, python-numpy, and python-sgp4.
[propagated-inputs]: Add python-certifi, python-jplephem, python-numpy, and python-sgp4.

Change-Id: If5a9a47077edcebe83449c4c54a49189dea61c5a
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
324bc1ea8f
gnu: python-tweakwcs: Update to 0.8.6. 
* gnu/packages/astronomy.scm (python-tweakwcs): Update to 0.8.6.

Change-Id: Icfbb7680a5e208d68f5b8da3fa3fdd35a358ecf5
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
a57fa5a8ce
gnu: python-synphot: Enable more options. 
* gnu/packages/astronomy.scm (python-synphot) [propagated-inputs]: Add
python-dust-extinction and python-specutils. Sort alphabetically.
[native-inputs]: Add python-semantic-version.

Change-Id: If4dbcf2765508d7c7e2b7580193367ed2d038b6f
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
fb4293c4ec
gnu: Add python-specutils. 
* gnu/packages/astronomy.scm (python-specutils): New variable.

Change-Id: Ic2ee65eb8a6fb7e5fe0d0d086541d47eef8bd1ad
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
4d00cf5d78
gnu: Add python-dust-extinction. 
* gnu/packages/astronomy.scm (python-dust-extinction): New variable.

Change-Id: I6fecfede0c347d032555b8f81bcf4f7072fc1129
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
a75c4114f8
gnu: Add python-ndcube. 
* gnu/packages/astronomy.scm (python-ndcube): New variable.

Change-Id: I94087c7e02ca678531bcbf4eb3d035e2647768fd
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
5d390495ab
gnu: python-sunpy: Update to 5.1.1. 
* gnu/packages/astronomy.scm (python-sunpy): Update to 5.1.1.
[arguments]<#:test-flags>: Ignore test_spice.py as SpicePy is not packed
yet and python-spicepy is optional.
<#:phases>{prepare-test-environment}: Add pytest.ini configuration file
to fix tests.

Change-Id: Icfb05ce29b376a05291e9f7020170e389d0081d2
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
8084df8b10
gnu: python-stcal: Update to 1.5.2. 
* gnu/packages/astronomy.scm (python-stcal): Update to 1.5.2.
[propagated-inputs]: Add python-asdf-3.0 and python-gwcs.
[native-inputs]: Remove python-cython; add python-cython-3 and python-semantic-version.

Change-Id: I8b6a90a3c0b75ee43de4c7069950a4f9578ea825
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
4a68e6aabf
gnu: python-pyvo: Update to 1.5. 
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.5.
[propagated-inputs]: Remove python-mimeparse.

Change-Id: I4d3e19b95c034cf3c82cec55a198d9a927934971
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
01b0ed5a6d
gnu: python-drms: Update to 0.7.1. 
* gnu/packages/astronomy.scm (python-drms): Update to 0.7.1.

Change-Id: I3744efa8c87db7fcb743bf8dca4ec6a437a82951
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
e5923f4f3c
gnu: python-crds: Update to 11.17.14. 
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.14.
[description]: Indent it and apply TexInfo style on URLs.

Change-Id: Icd298578cf685cfbc454d5b16b9f89c6d050b93a
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
25b69fcac8
gnu: libxisf: Update to 0.2.11. 
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.11.

Change-Id: I79242d42af3db660c46be0baf05e11ea7ac680f7
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
eb4cee3a9c
gnu: gpredict: Update home-page and description. 
* gnu/packages/astronomy.scm (gpredict)[home-page]: Update it according
to project's README.
[description]: Add feature detailed list.

Change-Id: If5edc6e50796c7753ac47fac082c267145723361
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
b4f638879d
gnu: indi-2.0: Update to 2.0.5. 
* gnu/packages/astronomy.scm (indi-2.0): Update to 2.0.5.

Change-Id: I9cea7e7d11af5a142066f11a2185eb826570afb5
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
800b09aeef
gnu: stellarium: Update to 23.4. 
* gnu/packages/astronomy.scm (stellarium): Update to 23.4.
[inputs]: Add nlopt.

Change-Id: Id205ad84ff75a687f6c1fdababcf3040c0c55abd
 2024-01-24 22:24:37 +00:00
Ricardo Wurmus
2266754382
gnu: python-pytorch-geometric: Disable one test. 
* gnu/packages/machine-learning.scm (python-pytorch-geometric)[arguments]:
Disable test_gdc as it occasionally fails.

Change-Id: I9d1dc1b68628801ea1bb5a8bdfa17063990748ea
 2024-01-24 22:37:14 +01:00
Efraim Flashner
362ab8bf18
gnu: libdispatch: Update to 5.9.2. 
* gnu/packages/c.scm (libdispatch): Update to 5.9.2.

Change-Id: I119d1de974673aa2c08eb51a7bcaa7ce24aeb0b2
 2024-01-24 22:25:00 +02:00
Efraim Flashner
da3e6aea0a
gnu: range-v3: Update to 0.12.0. 
* gnu/packages/cpp.scm (range-v3): Update to 0.12.0.
[source]: Remove patch.
* gnu/packages/patches/range-v3-build-with-gcc10.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Change-Id: I078937f9aff0da31ede8d472d8739e48bb775c55
 2024-01-24 19:15:30 +02:00
Efraim Flashner
c0f3c0cfd9
gnu: range-v3: Format with 'guix style'. 
* gnu/packages/cpp.scm (range-v3): Format with 'guix style'.

Change-Id: I249443e5e5d0f7ef49e33de4f140246a862101d2
 2024-01-24 19:15:30 +02:00
Efraim Flashner
3643389ba7
gnu: range-v3: Build with newer gcc. 
* gnu/packages/cpp.scm (range-v3)[native-inputs]: Remove gcc-9.

Change-Id: I0411d5db3e3df15c6df0a9a010d311fe1c80015c
 2024-01-24 19:15:25 +02:00
Ricardo Wurmus
c3353791a4
gnu: python-xgboost: Fix build. 
* gnu/packages/machine-learning.scm (python-xgboost)[build-system]: Use
pyproject-build-system.
[arguments]: Move test flags to #:test-flags; disable a few more tests, mostly
to account for a removed dataset; use G-expression; remove custom 'check phase.

Change-Id: I6841a8c159919df85acaa8558248a8775ec5be80
 2024-01-24 17:37:37 +01:00
Andre A. Gomes
2c5faa9ab8
gnu: webkitgtk: Update to 2.42.4 [fixes CVE-2023-42883]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.42.4.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2024-01-24 10:47:05 -05:00
Maxim Cournoyer
e479920cfd
gnu: emacs-yasnippet: Update to 0.14.0-0.297546f. 
* gnu/packages/emacs-xyz.scm (emacs-yasnippet): Update to 0.14.0-0.297546f.
Remove fix-tests patch.
* gnu/packages/patches/emacs-yasnippet-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.

Change-Id: I3fda2bb3d879d88f06f9d814b6c8d835d9eafc9f
 2024-01-24 10:42:42 -05:00
Maxim Cournoyer
1348be9115
gitconfig: b4: Automatically add 'Signed-off-by' when applying patches. 
Also use --3way to ease conflict resolutions.

* etc/git/gitconfig [b4]: Add shazam-am-flags option.

Change-Id: I6a92909a5b23a8680c16251aafa084b9a48944ea
 2024-01-24 10:42:41 -05:00
Ricardo Wurmus
c797abdd29
gnu: Add python-pytorch-geometric. 
* gnu/packages/machine-learning.scm (python-pytorch-geometric): New variable.

Change-Id: I9a016cda7d167159437724a878e6512c37106fea
 2024-01-24 16:36:37 +01:00
Andreas Enge
e54124ca4d
gnu: singular: Update to 4.3.2p10. 
* gnu/packages/algebra.scm (singular): Update to 4.3.2p10.

Change-Id: I196d31e3f5605dd51385146ce091d63a4e9eb340
 2024-01-24 14:31:16 +01:00
Ricardo Wurmus
db96cc0ba2
gnu: Add r-papaja. 
* gnu/packages/cran.scm (r-papaja): New variable.

Co-authored-by: Lars-Dominik Braun <lars@6xq.net>
Change-Id: Ib5b3a6ff8d52052cf135b2ba36cad3ce295ed6d4
 2024-01-24 13:02:01 +01:00
Ricardo Wurmus
d5e7ad7188
gnu: Add r-tinylabels. 
* gnu/packages/cran.scm (r-tinylabels): New variable.

Change-Id: Ie86de4daaf132cd32f896573be747f35e725258e
 2024-01-24 13:01:52 +01:00