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Author SHA1 Message Date
Ricardo Wurmus
667f799641
gnu: r-survival: Update to 3.1-11. 
* gnu/packages/statistics.scm (r-survival): Update to 3.1-11.
 2020-03-07 20:03:43 +01:00
Ricardo Wurmus
d8545835bd
gnu: r-lifecycle: Update to 0.2.0. 
* gnu/packages/cran.scm (r-lifecycle): Update to 0.2.0.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:32 +01:00
Ricardo Wurmus
a97c648c61
gnu: r-covr: Update to 3.5.0. 
* gnu/packages/cran.scm (r-covr): Update to 3.5.0.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:21 +01:00
Ricardo Wurmus
4882fcd292
gnu: r-pscl: Update to 1.5.5. 
* gnu/packages/cran.scm (r-pscl): Update to 1.5.5.
 2020-03-07 20:03:11 +01:00
Ricardo Wurmus
15d3ac75ce
gnu: r-mosaic: Add r-knitr. 
* gnu/packages/cran.scm (r-mosaic)[native-inputs]: Add r-knitr.
 2020-03-07 20:02:52 +01:00
Ricardo Wurmus
c68c7e2fbf
gnu: r-insight: Update to 0.8.2. 
* gnu/packages/cran.scm (r-insight): Update to 0.8.2.
[native-inputs]: Add r-knitr.
 2020-03-07 20:02:35 +01:00
Ricardo Wurmus
491ce4f083
gnu: r-heatmaply: Add r-knitr. 
* gnu/packages/cran.scm (r-heatmaply)[native-inputs]: Add r-knitr.
 2020-03-07 20:02:14 +01:00
Ricardo Wurmus
d56553edc3
gnu: r-methylkit: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-methylkit)[native-inputs]: Add r-knitr.
 2020-03-07 19:42:34 +01:00
Ricardo Wurmus
06fc1882f2
gnu: r-ggrepel: Add r-knitr. 
* gnu/packages/cran.scm (r-ggrepel)[native-inputs]: Add r-knitr.
 2020-03-07 19:38:31 +01:00
Ricardo Wurmus
67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
bf3722f9db
gnu: r-depecher: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
a2512e436b
gnu: r-xcms: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
f0aaa4482a
gnu: r-yamss: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
56bf00b94e
gnu: r-viridis: Add r-knitr. 
* gnu/packages/statistics.scm (r-viridis)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Ricardo Wurmus
3b7c644569
gnu: r-vsn: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-vsn)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Michael Rohleder
9eed0a74f9
fd: Install bash completion properly. 
* gnu/packages/rust-apps.scm (fd)[arguments]: Replace
  the dash in "bash-completion.d" with an underscore.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 18:32:27 +01:00
Robert Smith
880a316591
gnu: anki: Fix mpv audio playback 
* gnu/packages/patches/anki-mpv-args.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/education.scm (anki): Adjust accordingly, wrap anki's
  PATH to include mpv executable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 17:29:34 +01:00
Pierre Neidhardt
262d6ed465
gnu: next: Fix build with SBCL 2.0.2. 
* gnu/packages/web-browsers.scm (next)[arguments]: Fix lambda-list type error
  on SBCL 2.0.2.
 2020-03-07 17:12:35 +01:00
Tobias Geerinckx-Rice
322ea25c56
gnu: s6-rc: Update to 0.5.1.2. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
072102f651
gnu: s6-portable-utils: Update to 2.2.2.2. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.2.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
82853fbf8c
gnu: s6-networking: Update to 2.3.1.2. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
5cecf3f4e2
gnu: s6-linux-utils: Update to 2.5.1.2. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
1d57075049
gnu: scm: Update to 5f3. 
* gnu/packages/scheme.scm (scm): Update to 5f3.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
db34ab7350
gnu: ntp: Update to 4.2.8p14 [fixes Sec 3610, Sec 3596, Sec 3592]. 
https://support.ntp.org/bin/view/Main/SecurityNotice#Recent_Vulnerabilities

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p14.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
e4a9f135f7
gnu: ntp: Use HTTPS in metadata URIs 
* gnu/packages/ntp.scm (ntp)[home-page, license]: Use HTTPS.
 2020-03-07 16:04:20 +01:00
Vincent Legoll
e7ba60ddce
gnu: unbound: Update to 1.10.0. 
* gnu/packages/dns.scm (unbound): Update to 1.10.0.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 14:51:37 +01:00
Vincent Legoll
4c8b874f95
gnu: ppp: Update to 2.4.8-1.8d45443 [fixes CVE-2020-8597]. 
* gnu/packages/samba.scm (ppp): Update to 2.4.8-1.8d45443.
Use GIT-FETCH and GIT-FILE-NAME.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-03-07 14:27:06 +01:00
Tobias Geerinckx-Rice
4f236f84a9
gnu: Use HTTPS for commons.apache.org home pages. 
* gnu/packages/java.scm (java-commons-io, java-commons-logging-minimal)
(java-commons-math3, java-commons-jxpath, java-commons-daemon)
(java-commons-net, java-commons-vfs, java-commons-beanutils)
(java-commons-lang, java-commons-lang3)[home-page]:Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
c82ddf3360
gnu: java-joda-convert: Use HTTPS home page. 
* gnu/packages/java.scm (java-joda-convert)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
4d1ddb5156
gnu: java-log4j-1.2-api: Use HTTPS home page. 
* gnu/packages/java.scm (java-log4j-1.2-api)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
c901060547
gnu: java-testng: Use HTTPS home page. 
* gnu/packages/java.scm (java-testng)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
b93a0c1e6d
gnu: java-junit: Use HTTPS home page. 
* gnu/packages/java.scm (java-junit)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
a809d63252
gnu: java-openchart2: Use HTTPS home page. 
* gnu/packages/java.scm (java-openchart2)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
a15b45290d
gnu: raincat: Update home page. 
* gnu/packages/haskell-apps.scm (raincat)[home-page]: Update.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
f23365fa2c
gnu: instantmusic: Update home page. 
* gnu/packages/music.scm (instantmusic)[home-page]: Update.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
5969598149
gnu: openblas: Use HTTPS home page. 
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
14a5146f3a
gnu: python-execnet: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-execnet)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
cc31d17263
gnu: emacs-ffap-rfc-space: Use HTTPS home page. 
* gnu/packages/emacs-xyz.scm (emacs-ffap-rfc-space)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
6a0d1bd390
gnu: librecad: Use HTTPS home page. 
* gnu/packages/engineering.scm (librecad)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
c0dc417909
gnu: spice: Update to 0.14.3. 
* gnu/packages/spice.scm (spice): Update to 0.14.3.
[source]: Remove obsolete patch.
* gnu/packages/patches/spice-fix-test-armhf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
beecf815db
gnu: xfce4-weather-plugin: Update to 0.10.1. 
* gnu/packages/xfce.scm (xfce4-weather-plugin): Update to 0.10.1.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
3a5557a4d2
gnu: xfce4-clipman-plugin: Update to 1.4.4. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin): Update to 1.4.4.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
0bbf14ce93
gnu: xfce4-clipman-plugin: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin)[source]: Hard-code NAME.
 2020-03-07 12:48:17 +01:00
Pierre Neidhardt
ece22a25b6
gnu: fmt: Switch back to url-fetch. 
* gnu/packages/pretty-print.scm (fmt)[source]: Use url-fetch instead of
  git-fetch since upstream uploads releases.  Both approaches produce the
  same package, but git-fetch requires more bandwidth.
 2020-03-07 12:37:14 +01:00
Pierre Neidhardt
0bc557fd70
gnu: cl-dbus: Remove unneeded inputs. 
* gnu/packages/lisp-xyz.scm (cl-dbus)[propagated-inputs]: Remove iolib
  subpackages now that iolib properly references them.
 2020-03-07 11:30:11 +01:00
Pierre Neidhardt
af5c4efff6
gnu: sbcl-iolib: Fix build to refer to its subpackages properly. 
* gnu/packages/lisp-xyz.scm (sbcl-iolib): Inherit from its subpackages instead
  of the other way around, so that they are automatically referenced in the
  generated .asd.
 2020-03-07 11:28:32 +01:00
Vagrant Cascadian
5fb3c00256
gnu: go-golang.org-x-sync-errgroup: Fix spelling of "cancellation". 
* gnu/packages/golang (go-golang.org-x-sync-errgroup)[synopsis]: Fix typo.
 2020-03-06 20:13:30 -08:00
Vagrant Cascadian
52c733124a
gnu: rust-named-pipe-0.4: Fix spelling of "asynchronous" 
* gnu/packages/crates-io (rust-named-pipe-0.4)[synopsis]: Fix typo.
  [description]: Fix typo.
 2020-03-06 20:13:28 -08:00
Vagrant Cascadian
92f4583208
gnu: r-d3network: Fix typo "This package". 
* gnu/packages/cran (r-d3network)[description]: Fix typo.
 2020-03-06 20:13:25 -08:00
Vagrant Cascadian
5b309c6242
gnu: ksystemlog: Fix spelling of "occurring". 
* gnu/packages/kde-sytemtools (ksystemlog)[description]: Fix typo.
 2020-03-06 20:13:23 -08:00
Vagrant Cascadian
adca9882be
gnu: unicode-cldr-common: Fix spelling of "information". 
* gnu/packages/unicode (unicode-cldr-common)[description]: Fix typo.
 2020-03-06 20:13:19 -08:00
Vagrant Cascadian
374540ff65
gnu: sdl-pango: Rename patch to fix guix lint warning about patch filename size. 
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapToSurface.patch:
  Rename to ...
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapTo.patch:
  ... this.
* gnu/local.mk: Update accordingly.
* gnu/packages/sdl.scm: Update accordingly.
 2020-03-06 17:34:00 -08:00
Vagrant Cascadian
789c02478a
gnu: akonadi: Rename patch to fix guix lint warning about patch filename size. 
* gnu/packages/patches/akonadi-Revert-Make-installation-properly-relocatabl.patch:
  Rename to ...
* gnu/packages/patches/akonadi-Revert-Make-installation-properly-relo.patch:
  ... this.
* gnu/packages/kde-pim (akonadi) Update accordingly.
* gnu/local.mk: Update accordingly.
 2020-03-06 17:33:56 -08:00
Tobias Geerinckx-Rice
b2ce10e3a9
gnu: yasm: Use HTTPS home page. 
* gnu/packages/assembly.scm (yasm)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
a4fdde47cc
gnu: jq: Use HTTPS home page. 
* gnu/packages/web.scm (jq)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
c61bfa08ed
gnu: xerces-c: Use HTTPS home page. 
* gnu/packages/xml.scm (xerces-c)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
898dc4947f
gnu: ytalk: Use HTTPS home page. 
* gnu/packages/messaging.scm (ytalk)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
1d7be5938b
gnu: re2c: Use HTTPS home page. 
* gnu/packages/re2c.scm (re2c)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
fc10386909
gnu: zimg: Update to 2.9.3. 
* gnu/packages/image.scm (zimg): Update to 2.9.3.
 2020-03-07 01:41:24 +01:00
Tobias Geerinckx-Rice
290fe81ddc
gnu: bluefish: Update to 2.2.11. 
* gnu/packages/gnome.scm (bluefish): Update to 2.2.11.
[inputs]: Replace python-2 with python-wrapper.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
99aa7a2d6f
gnu: bluefish: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (bluefish)[source]: Hard-code NAME.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
eda580c079
gnu: rhythmbox: Update to 3.4.4. 
* gnu/packages/gnome.scm (rhythmbox): Update to 3.4.4.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
2588693df1
gnu: rhythmbox: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (rhythmbox)[source]: Hard-code NAME.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
d748843312
gnu: knot: Update to 2.9.3. 
* gnu/packages/dns.scm (knot): Update to 2.9.3.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
ed2d015d29
gnu: hplip: Update to 3.20.2. 
* gnu/packages/cups.scm (hplip): Update to 3.20.2.
 2020-03-07 01:41:23 +01:00
Tobias Geerinckx-Rice
64df1416c2
gnu: gkrellm: Update to 2.3.11. 
* gnu/packages/gkrellm.scm (gkrellm): Update to 2.3.11.
 2020-03-07 01:41:23 +01:00
Kei Kebreau
1d3c6a31b5
gnu: wxmaxima: Update to 20.02.4. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
 2020-03-06 15:04:34 -05:00
Mark H Weaver
c2f41cb3e8
gnu: linux-libre: Update to 5.4.24. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.24.
(linux-libre-5.4-pristine-source): Update hash.
 2020-03-06 14:20:30 -05:00
Mark H Weaver
5d01cc3673
gnu: linux-libre@4.19: Update to 4.19.108. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.108.
(linux-libre-4.19-pristine-source): Update hash.
 2020-03-06 14:19:34 -05:00
Marius Bakke
a009a3eead
gnu: ungoogled-chromium: Increase max-silent-time. 
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Add
'max-silent-time'.
 2020-03-06 18:42:36 +01:00
Marius Bakke
a125397a4b
gnu: mercurial: Update to 5.3.1. 
* gnu/packages/version-control.scm (mercurial): Update to 5.3.1.
[native-inputs]: Add WHICH.
 2020-03-06 18:42:36 +01:00
Vagrant Cascadian
87bf568022
Do not record store file name in cpp.scm. 
* gnu/packages/cpp.scm (abseil-cpp): Replace full store file name with '...'
 2020-03-06 08:24:45 -08:00
Tobias Geerinckx-Rice
1ab58a3d90
gnu: carla: Fix start-up. 
This fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=39942>,
properly.

* gnu/packages/audio.scm (carla)[arguments]: Add ‘wrap-executables’ phase.
[inputs]: Add guile-2.2.
 2020-03-06 16:29:16 +01:00
Tobias Geerinckx-Rice
366c2c8f48
gnu: fmt: Fix home page. 
* gnu/packages/pretty-print.scm (fmt)[home-page]: Update.
 2020-03-06 16:23:49 +01:00
Tobias Geerinckx-Rice
522ec708bc
gnu: Order module imports in (gnu packages audio). 
* gnu/packages/audio.scm: Order module imports alphabetically.
 2020-03-06 16:23:49 +01:00
Tobias Geerinckx-Rice
5424e680b8
gnu: carla: Partially fix start-up. 
This fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=39942> but
carla still fails to start.

Reported by Nathan Dehnel <ncdehnel@gmail.com>.

* gnu/packages/audio.scm (carla)[arguments]: Add ‘make-carla-executable’ phase.
 2020-03-06 15:02:33 +01:00
Tobias Geerinckx-Rice
462ca0bbb7
gnu: dovecot: Update to 2.3.10. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.10.
 2020-03-06 13:01:29 +01:00
Pierre Neidhardt
59d4c8c2bf
gnu: Add gnome-boxes. 
* gnu/packages/gnome.scm (gnome-boxes): New variable.
 2020-03-06 12:46:26 +01:00
Pierre Neidhardt
852fa6050e
gnu: tracker-miners: Update to 2.3.2. 
* gnu/packages/gnome.scm (tracker-miners): Update to 2.3.2.
 2020-03-06 12:46:26 +01:00
Pierre Neidhardt
63db190a52
gnu: tracker: Update to 2.3.2. 
* gnu/packages/gnome.scm (tracker): Update to 2.3.2.
[arguments]: Fix tests properly.
[native-inputs]: Remove unneeded native-inputs.
[inputs]: Remove unneeded inputs.
[description]: Replace unclear description with more down to earth use cases.
[license]: Replace lgpl2.0+ with bsd-3 to reflect update.
 2020-03-06 12:46:26 +01:00
Pierre Neidhardt
a9838ee00a
gnu: libvirt-glib: Update to 3.0.0. 
* gnu/packages/virtualization.scm (libvirt-glib): Update to 3.0.0.
 2020-03-06 12:46:26 +01:00
Marius Bakke
7154f5ef4b
gnu: python-pygit2: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-pygit2): Update to 1.1.0.
[propagated-inputs]: Remove PYTHON-SIX and PYTHON-TOX.  Add PYTHON-CACHED-PROPERTY.
(python2-pygit2): Remove variable (Python 2 is no longer supported).
 2020-03-06 12:31:08 +01:00
Marius Bakke
5358950259
gnu: gitg: Remove redundant input. 
* gnu/packages/gnome.scm (gitg)[inputs]: Remove LIBGIT2.
 2020-03-06 12:31:07 +01:00
Marius Bakke
8c6aae4636
gnu: libgit2-glib: Adjust inputs. 
* gnu/packages/gnome.scm (libgit2-glib)[native-inputs]: Move LIBSSH2 ...
[inputs]: ... here.  Move LIBGIT2 ...
[propagated-inputs]: ... here.  New field.
 2020-03-06 12:31:07 +01:00
Marius Bakke
6448c2e156
gnu: libgit2-glib: Update to 0.99.0.1. 
* gnu/packages/gnome.scm (libgit2-glib): Update to 0.99.0.1.
[native-inputs]: Remove INTLTOOL.
 2020-03-06 12:31:07 +01:00
Ricardo Wurmus
dd386dd74f
gnu: r-modeltools: Update to 0.2-23. 
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-23.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
87aa4d6245
gnu: r-ggplot2: Update to 3.3.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.0.
[propagated-inputs]: Remove r-lazyeval, r-reshape2, and r-viridislite; add
r-glue and r-isoband.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
bafedbc362
gnu: Add r-isoband. 
* gnu/packages/cran.scm (r-isoband): New variable.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
858d5d7037
gnu: r-bookdown: Update to 0.18. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.18.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
099adcf81f
gnu: r-fs: Update to 1.3.2. 
* gnu/packages/cran.scm (r-fs): Update to 1.3.2.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
36488596b4
gnu: r-flextable: Update to 0.5.9. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.9.
 2020-03-06 12:15:51 +01:00
Ricardo Wurmus
be01767cb9
gnu: r-lava: Update to 1.6.7. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.7.
 2020-03-06 12:15:50 +01:00
Roel Janssen
83a483aac7
gnu: Update python-scikit-learn to 0.22.1. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.22.1;
  Add python-joblib to native-inputs to run the test suite.
 2020-03-06 10:45:51 +01:00
Pierre Neidhardt
6d26ee3b67
gnu: Add soci. 
* gnu/packages/databases.scm (soci): New variable.
 2020-03-06 10:20:55 +01:00
Pierre Neidhardt
8be782c713
gnu: fmt: Update to 6.1.2. 
* gnu/packages/pretty-print.scm (fmt): Update to 6.1.2.
 2020-03-06 10:15:19 +01:00
Pierre Neidhardt
744f445c92
gnu: fmt: Use HTTPS and git-fetch. 
* gnu/packages/pretty-print.scm (fmt)[source]: Use git-fetch.
[home-page]: Use HTTPS.
 2020-03-06 10:15:19 +01:00
Ricardo Wurmus
fecd32501f
gnu: python-aiohttp: Update to 3.6.2. 
* gnu/packages/python-web.scm (python-aiohttp): Update to 3.6.2.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
858e642e4c
gnu: python-scanpy: Update to 1.4.5.1. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.5.1.
[source]: Fetch from pypi.
[propagated-inputs]: Add python-legacy-api-wrap, python-packaging,
python-patsy, and python-umap-learn.
[native-inputs]: Add python-setuptools-scm.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
053ab825be
gnu: Add python-legacy-api-wrap. 
* gnu/packages/python-xyz.scm (python-legacy-api-wrap): New variable.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
2ceff35f07
gnu: Add python-get-version. 
* gnu/packages/python-xyz.scm (python-get-version): New variable.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
cc2c2850ce
gnu: Add python-pytest-black. 
* gnu/packages/python-xyz.scm (python-pytest-black): New variable.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
5f603fab23
gnu: python-black: Update to 19.10b0. 
* gnu/packages/python-xyz.scm (python-black): Update to 19.10b0.
[arguments]: Patch tests.
[propagated-inputs]: Add python-pathspec, python-regex, and python-typed-ast.
[native-inputs]: Add python-setuptools-scm.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
c777ecb372
gnu: Add python-pathspec. 
* gnu/packages/python-xyz.scm (python-pathspec): New variable.
 2020-03-06 09:16:48 +01:00
Ricardo Wurmus
538c1a024a
gnu: python-tables: Use later hdf5 version. 
* gnu/packages/python-xyz.scm (python-tables)[inputs]: Replace hdf5 with
hdf5-1.10.
 2020-03-06 09:16:47 +01:00
Ricardo Wurmus
70b74663b6
gnu: python-tables: Do not detect CPU features. 
* gnu/packages/python-xyz.scm (python-tables)[arguments]: Add phase
"disable-tuning".
 2020-03-06 09:16:47 +01:00
Ludovic Courtès
bc8b2ffdac
ci: Adjust 'channel-build-system' for when the source is a file name. 
Fixes an evaluation error introduced in
dd1ee160be: when invoked via
'build-aux/cuirass/gnu-system.scm', SOURCE is a store file name, not a
<local-file> as it is when invoked via 'etc/system-tests.scm'.

* gnu/ci.scm (channel-build-system)[build]: Call 'lower-object' only
when SOURCE is not a string.
 2020-03-05 23:40:24 +01:00
Mathieu Othacehe
e666a92344
tests: install: Add %test-gui-installed-os-encrypted. 
* gnu/tests/install.scm (%test-gui-installed-os-encrypted): New variable,
(guided-installation-test): set a swap-device only if there is no encryption.
 2020-03-05 23:40:24 +01:00
Mathieu Othacehe
64704be417
installer: Fix cow-store umount. 
This fixes <https://bugs.gnu.org/39712>.

The guix-daemon was preventing the cow-store umount, so restart it.  Some
udevd workers, using cow-store files might also still be around, so have some
umount retries.

* gnu/installer/final.scm (kill-cow-users): New procedure,
(umount-cow-store): restart guix-daemon and kill all processes started from
within the cow-store before trying to umount the store overlay. Also try 5
times to umount the overlay in case it is still busy.
 2020-03-05 23:40:24 +01:00
Ludovic Courtès
ccb1a8c437
tests: install: Add "gui-installed-os". 
* gnu/installer/tests.scm: New file.
* gnu/local.mk (INSTALLER_MODULES): Add it.
* gnu/tests/install.scm (run-install): Add #:gui-test.  Add (gnu
installer tests) to the marionette imported modules.  Honor GUI-TEST.
Check whether SCRIPT is true.
(%root-password, %syslog-conf): New variable.
(operating-system-with-console-syslog, gui-test-program)
(guided-installation-test): New procedures.
(%extra-packages, installation-os-for-gui-tests)
(%test-gui-installed-os): New variable.
 2020-03-05 23:40:23 +01:00
Ludovic Courtès
e458726ab4
installer: Honor /tmp/installer-system-init-options. 
* gnu/installer/final.scm (install-system): Honor
"/tmp/installer-system-init-options".
 2020-03-05 23:40:23 +01:00
Ludovic Courtès
8a4b11c6a9
installer: Run commands without hopping through the shell. 
* gnu/installer/utils.scm (run-shell-command): Rename to...
(run-command): Remove call to 'call-with-temporary-output-file' and hop
through Bash.  Expect COMMAND to be a list of strings rather than a
string.
* gnu/installer/final.scm (install-system): Turn INSTALL-COMMAND into a
list of strings and pass it to 'run-command'.
* gnu/installer/newt/page.scm (edit-file): Likewise.
 2020-03-05 23:40:23 +01:00
Ludovic Courtès
f901f5d2bc
installer: Bypass connectivity check when /tmp/installer-assume-online exists. 
This is useful for automated tests.

* gnu/installer/newt/network.scm (wait-service-online)[online?]: New
procedure.  Check for /tmp/installer-assume-online.
Use it instead of 'connman-online?'.
 2020-03-05 23:40:22 +01:00
Ludovic Courtès
63b8c089c1
installer: Implement a dialog on /var/guix/installer-socket. 
This will allow us to automate testing of the installer.

* gnu/installer/utils.scm (%client-socket-file)
(current-server-socket, current-clients): New variables.
(open-server-socket, call-with-server-socket): New procedure.
(with-server-socket): New macro.
(run-shell-command): Add call to 'send-to-clients'.  Select on both
current-input-port and current-clients.
* gnu/installer/steps.scm (run-installer-steps): Wrap 'call-with-prompt'
in 'with-socket-server'.  Call 'sigaction' for SIGPIPE.
* gnu/installer/newt/page.scm (watch-clients!, close-port-and-reuse-fd)
(run-form-with-clients, send-to-clients): New procedures.
(draw-info-page): Add call to 'run-form-with-clients'.
(run-input-page): Likewise.  Handle EXIT-REASON equal to 'exit-fd-ready.
(run-confirmation-page): Likewise.
(run-listbox-selection-page): Likewise.  Define 'choice->item' and use it.
(run-checkbox-tree-page): Likewise.
(run-file-textbox-page): Add call to 'run-form-with-clients'.  Handle
'exit-fd-ready'.
* gnu/installer/newt/partition.scm (run-disk-page): Pass
 #:client-callback-procedure to 'run-listbox-selection-page'.
* gnu/installer/newt/user.scm (run-user-page): Call
'run-form-with-clients'.  Handle 'exit-fd-ready'.
* gnu/installer/newt/welcome.scm (run-menu-page): Define
'choice->item' and use it.  Call 'run-form-with-clients'.
* gnu/installer/newt/final.scm (run-install-success-page)
(run-install-failed-page): When (current-clients) is non-empty, call
'send-to-clients' without displaying a choice window.
 2020-03-05 23:40:22 +01:00
Ludovic Courtès
5ce84b1713
installer: Use a Guile-Newt snapshot that supports 'form-watch-fd'. 
* gnu/installer.scm (guile-newt): New variable.
 2020-03-05 23:40:22 +01:00
Ludovic Courtès
91ba90c18b
tests: 'run-basic-test' can enter a root password. 
* gnu/tests/base.scm (run-basic-test): Add #:root-password and honor it.
 2020-03-05 23:40:22 +01:00
Björn Höfling
2c2b1ef854
gnu: java-openjfx-build: Add snippet. 
* gnu/packages/java.scm (java-openjfx-build)[source]: Add snippet to remove
bundled gradle.
 2020-03-05 22:10:17 +01:00
Ricardo Wurmus
a098b34980
gnu: python-anndata: Update to 0.7.1. 
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.1.
[arguments]: Move check phase after install phase; delete one test.
[propagated-inputs]: Add python-importlib-metadata, python-numcodecs,
python-packaging, and python-zarr.
[native-inputs]: Add python-joblib, python-pytest, and python-setuptools-scm.
 2020-03-05 21:46:12 +01:00
Ricardo Wurmus
7032c1cc60
gnu: Add python-zarr. 
* gnu/packages/python-xyz.scm (python-zarr): New variable.
 2020-03-05 21:46:05 +01:00
Ricardo Wurmus
8e04b233f1
gnu: Add python-asciitree. 
* gnu/packages/python-xyz.scm (python-asciitree): New variable.
 2020-03-05 21:45:55 +01:00
Ricardo Wurmus
241409cd8a
gnu: Add python-numcodecs. 
* gnu/packages/python-xyz.scm (python-numcodecs): New variable.
 2020-03-05 21:45:46 +01:00
Ricardo Wurmus
24ce64216e
gnu: python-h5py: Update to 2.10.0. 
* gnu/packages/python-xyz.scm (python-h5py): Update to 2.10.0.
[inputs]: Use hdf5-1.10.
[native-inputs]: Add pkg-config.
 2020-03-05 21:45:14 +01:00
Masaya Tojo
5d0f33c2ab
gnu: Add emacs-ddskk. 
* gnu/packages/emacs-xyz.scm (emacs-ddskk): New variable.
 2020-03-05 19:22:42 +01:00
Nicolas Goaziou
67c525035f
gnu: libraqm: Parametrize version. 
* gnu/packages/fontutils.scm (libraqm)[source]: Parametrize version.
 2020-03-05 18:43:09 +01:00
Nicolas Goaziou
a1797f3244
gnu: Add libraqm. 
* gnu/packages/fontutils.scm (libraqm): New variable.
 2020-03-05 18:42:02 +01:00
Ludovic Courtès
c0b726c211
tests: Add <system-test> gexp compiler. 
* gnu/tests.scm (compile-system-test): New gexp compiler.
 2020-03-05 16:33:37 +01:00
Ludovic Courtès
dd1ee160be
tests: "make check-system" no longer interns source upfront. 
* gnu/ci.scm (channel-build-system)[build, lower]: Honor #:source.
(channel-source->package): New procedure.
(system-test-jobs): Remove 'instance' and call to
'checkout->channel-instance'.  Use 'channel-source->package'.
* build-aux/run-system-tests.scm (tests-for-channel-instance): Rename to...
(tests-for-current-guix): ... this.  Change 'instance' to 'source'.
(run-system-tests): Use 'local-file' instead of 'interned-file' for
SOURCE.
 2020-03-05 16:33:37 +01:00
Ludovic Courtès
3046e73b4c
ci: Move 'cross-jobs' procedure to the top level. 
* gnu/ci.scm (cross-jobs): New procedure.  Moved from...
(hydra-jobs): ... here.
 2020-03-05 16:33:37 +01:00
Pierre Neidhardt
94aab844c6
gnu: sbcl-cl-webkit: Update to 20200227. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20200227.
 2020-03-05 15:57:18 +01:00
Arun Isaac
69bb61f128
gnu: Add guile-xapian. 
* gnu/packages/guile-xyz.scm (guile-xapian, guile3.0-xapian): New variables.
 2020-03-05 19:59:46 +05:30
Arun Isaac
85c3a49a67
gnu: emacs-tldr: Update to 0-1.7203d1b. 
* gnu/packages/emacs-xyz.scm (emacs-tldr): Update to 0-1.7203d1b.
[propagated-inputs]: Add emacs-request.
 2020-03-05 15:56:32 +05:30
Björn Höfling
6656123d26
gnu: coq-mathcomp: Update home page URI. 
* gnu/packages/coq.scm (coq-mathcomp)[home-page]: Update URI.
 2020-03-05 10:11:34 +01:00
Björn Höfling
c5bb55a844
gnu: squashfs-tools: Update home page URI. 
* gnu/packages/compression.scm (squashfs-tools)[home-page]: Update URI.
 2020-03-05 10:11:34 +01:00
Björn Höfling
1ac624cd5b
gnu: pbzip2: Use archived home-page. 
* gnu/packages/compression.scm (pbzip2)[home-page]: Load from archive.org
 2020-03-05 10:11:33 +01:00
Björn Höfling
7f489c5655
gnu: domainfinder: Update home page URI. 
* gnu/packages/chemistry.scm (domainfinder)[home-page]: Update URI.
 2020-03-05 10:11:33 +01:00
Björn Höfling
357328d2a9
gnu: nmoldyn: Upate home page URI. 
* gnu/packages/chemistry.scm (nmoldyn)[home-page]: Update URI.
 2020-03-05 10:11:32 +01:00
Felix Gruber
aac148a87b
gnu: SuiteSparse: Update to 5.7.1. 
* gnu/packages/maths.scm (suitesparse): Update to 5.7.1.
[source]: The latest releases of SuiteSparse have only been published on GitHub.
Fetch from git tag as GitHub releases page only contains autogenerated tarballs
that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to
find SuiteSparse_config.
[arguments]: Add CMake flags used by new components GraphBLAS and Mongoose.
[native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose.
* gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-04 18:08:13 -05:00
Marius Bakke
c2d7e800e6
gnu: ceph: Update to 14.2.8. 
* gnu/packages/patches/ceph-boost-compat.patch,
gnu/packages/patches/ceph-volume-respect-PATH.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 14.2.8.
[source](patches): Remove obsolete.
 2020-03-04 22:06:24 +01:00
Marius Bakke
d3c1e9272d
gnu: i3-wm: Update to 4.18. 
* gnu/packages/wm.scm (i3-wm): Update to 4.18.
 2020-03-04 22:06:23 +01:00
Marius Bakke
75545401cd
gnu: kodi: Update to 18.6. 
* gnu/packages/kodi.scm (kodi): Update to 18.6.
 2020-03-04 22:06:23 +01:00
Marius Bakke
0a7aa6922b
gnu: libgit2: Update to 0.99.0. 
* gnu/packages/patches/libgit2-avoid-python.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/version-control.scm (libgit2): Update to 0.99.0.
[source](patches): Remove 'libgit2-avoid-python.patch'.
[source](snippet): Preserve bundled copy of http-parser.
[arguments]: Remove "-DUSE_SHA1DC" from #:configure-flags, which is no longer
optional and enabled by default.  Add "-DUSE_NTLMCLIENT=OFF" and
"-DREGEX_BACKEND=pcre2".  Add phase 'fix-pcre2-reference'.
[inputs]: Remove HTTP-PARSER.
[propagated-inputs]: Add PCRE2.
[native-inputs]: Remove GUILE-2.2.  Add PYTHON.
 2020-03-04 22:06:23 +01:00
Marius Bakke
2f894cbc6a
gnu: enchant: Update to 2.2.8. 
* gnu/packages/enchant.scm (enchant): Update to 2.2.8.
 2020-03-04 22:06:23 +01:00
Marius Bakke
3f03643219
gnu: wpebackend-fdo: Update to 1.4.2. 
* gnu/packages/webkit.scm (wpebackend-fdo): Update to 1.4.2.
 2020-03-04 22:06:23 +01:00
Marius Bakke
e26c4a7e4e
gnu: re2: Update to 2020-03-03. 
* gnu/packages/regex.scm (re2): Update to 2020-03-03.
 2020-03-04 22:06:23 +01:00
Marius Bakke
bd65a4cf01
gnu: ibus: Update to 1.5.22. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.22.
 2020-03-04 22:06:22 +01:00
Marius Bakke
16af0dd907
gnu: libsoup: Update to 2.68.4. 
* gnu/packages/gnome.scm (libsoup): Update to 2.68.4.
 2020-03-04 22:06:22 +01:00
Marius Bakke
c1a86b666f
gnu: appstream-glib: Update to 0.7.17. 
* gnu/packages/patches/appstream-glib-2020.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.17.
[source](patches): Remove.
 2020-03-04 22:06:22 +01:00
Efraim Flashner
60ce496ad8
gnu: gcc-8: Update to 8.4.0. 
* gnu/packages/gcc.scm (gcc-8): Update to 8.4.0.
 2020-03-04 23:05:22 +02:00
Efraim Flashner
9cedae2aaf
gnu: libgee: Update to 0.20.3. 
* gnu/packages/gnome.scm (libgee): Update to 0.20.3.
 2020-03-04 23:05:22 +02:00
Tobias Geerinckx-Rice
5ba94aa702
gnu: ardour: Use HTTPS home page. 
* gnu/packages/audio.scm (ardour)[home-page]: Use HTTPS.
 2020-03-04 21:37:07 +01:00
Tobias Geerinckx-Rice
e85af13724
gnu: Update pypi.python.org home pages & use HTTPS. 
* gnu/packages/check.scm (python-unittest2, python-pytest-localserver)
(python-discover)[home-page]: Follow (HTTPS) redirections.
* gnu/packages/fontutils.scm (python2-defcon)[home-page]: Likewise.
* gnu/packages/glib.scm (python2-pygobject-2)[home-page]: Likewise.
* gnu/packages/graph.scm (python-igraph)[home-page]: Likewise.
* gnu/packages/graphviz.scm (xdot)[home-page]: Likewise.
* gnu/packages/pdf.scm (python-poppler-qt5)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-zope-event, python-zope-testing)
(python-zope-testrunner, python-zope-i18nmessageid, python-zope-schema)
(python-zope-configuration, python-zope-proxy, python-zope-location)
(python-zope-security))[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-setuptools,python-six)
(python2-dogtail, python2-enum, python-enum34, python-unidecode)
(python-numpydoc, python-decorator, python-drmaa, python-pathlib2)
(python-ly, python-msgpack, python-termcolor, python-colorama)
(python-pluggy, python2-pathlib2, python-rfc3987)[home-page]: Likewise.
 2020-03-04 21:30:57 +01:00
Tobias Geerinckx-Rice
dbc8a6e750
gnu: python-pyodbc: Update to 4.0.30. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.30.
 2020-03-04 20:59:53 +01:00
Tobias Geerinckx-Rice
e884c20533
gnu: crispy-doom: Update to 5.7.1. 
* gnu/packages/games.scm (crispy-doom): Update to 5.7.1.
 2020-03-04 20:59:53 +01:00
Tobias Geerinckx-Rice
95858abb62
gnu: sg3-utils: Update to 1.45. 
* gnu/packages/scsi.scm (sg3-utils): Update to 1.45.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
8863477245
gnu: girara: Update to 0.3.4. 
* gnu/packages/gtk.scm (girara): Update to 0.3.4.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
13d872234b
gnu: zathura-pdf-poppler: Update to 0.3.0. 
* gnu/packages/pdf.scm (zathura-pdf-poppler): Update to 0.3.0.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
01ebd8617f
gnu: zathura: Update to 0.4.5. 
* gnu/packages/pdf.scm (zathura): Update to 0.4.5.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
c0ba02379e
gnu: weasyprint: Update to 51. 
* gnu/packages/pdf.scm (weasyprint): Update to 51.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
8b5185c6a6
gnu: zathura-djvu: Update to 0.2.9. 
* gnu/packages/pdf.scm (zathura-djvu): Update to 0.2.9.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
8f55136a6a
gnu: meld: Update to 3.20.2. 
* gnu/packages/patchutils.scm (meld): Update to 3.20.2.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
b5544cb4d4
gnu: python-invoke: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-invoke)[home-page]: Use HTTPS.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
b07e73a2bc
gnu: python-zope-exceptions: Update home page. 
* gnu/packages/python-web.scm (python-zope-exceptions)[home-page]:
Follow (HTTPS) redirection.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
58d4e9498f
gnu: python-pbr: Update home page. 
* gnu/packages/python-xyz.scm (python-pbr)[home-page]: Follow (HTTPS)
redirection.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
7509f34fab
gnu: python-pyyaml: Update home page. 
* gnu/packages/python-xyz.scm (python-pyyaml)[home-page]: Link to
the (HTTPS) front page.
 2020-03-04 20:59:52 +01:00
Tobias Geerinckx-Rice
16c896e888
gnu: python-pytest-django: Use HTTPS home page. 
* gnu/packages/django.scm (python-pytest-django)[home-page]: Use HTTPS.
 2020-03-04 20:59:52 +01:00
Efraim Flashner
39d93ce2be
gnu: ddrescue: Update to 1.25. 
* gnu/packages/disk.scm (ddrescue): Update to 1.25.
 2020-03-04 21:48:30 +02:00
Ricardo Wurmus
6f6c73773d
gnu: r-plyr: Update to 1.8.6. 
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.6.
 2020-03-04 20:19:27 +01:00
Ricardo Wurmus
555f227398
gnu: r-nlme: Update to 3.1-145. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-145.
 2020-03-04 20:19:27 +01:00
Ricardo Wurmus
d797d24fe2
gnu: r-foreign: Update to 0.8-76. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-76.
 2020-03-04 20:19:27 +01:00
Ricardo Wurmus
d7d8af8bdc
gnu: r-erm: Update to 1.0-1. 
* gnu/packages/cran.scm (r-erm): Update to 1.0-1.
[propagated-inputs]: Add r-colorspace and r-psych.
 2020-03-04 20:19:27 +01:00
Ricardo Wurmus
3afdf6e440
gnu: r-spacyr: Update to 1.2.1. 
* gnu/packages/cran.scm (r-spacyr): Update to 1.2.1.
 2020-03-04 20:19:27 +01:00
Ricardo Wurmus
f4c105d44e
gnu: r-compositions: Update to 1.40-4. 
* gnu/packages/cran.scm (r-compositions): Update to 1.40-4.
 2020-03-04 20:19:27 +01:00
Ricardo Wurmus
8e19a9a031
gnu: r-emmeans: Update to 1.4.5. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.5.
 2020-03-04 20:19:27 +01:00
Ricardo Wurmus
6f501b7e84
gnu: r-ggformula: Update to 0.9.4. 
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.4.
[propagated-inputs]: Remove r-tidyr.
 2020-03-04 20:19:26 +01:00
Guillaume Le Vaillant
74c65c9d68
gnu: Add gpsd. 
* gnu/packages/gps.scm (gpsd): New variable.
 2020-03-04 18:27:22 +01:00
Roel Janssen
33aa372eec
gnu: Add abseil-cpp. 
* gnu/packages/cpp.scm (abseil-cpp): New variable.

Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
 2020-03-04 15:04:12 +01:00
Nicolas Goaziou
f19d0b1b3f
gnu: emacs-amx: Update to 3.3. 
* gnu/packages/emacs-xyz.scm (emacs-amx): Update to 3.3.
[synopsis]: Improve wording.
 2020-03-04 14:37:03 +01:00
Marius Bakke
d46f9f833b
gnu: ungoogled-chromium: Update to 80.0.3987.132-0.7e68f18 [fixes CVE-2020-6420]. 
* gnu/packages/chromium.scm (%chromium-version): Set to 80.0.3987.132.
(%ungoogled-revision): Set to 7e68f18f1d16a132fe7d913a176daf79897eaa58.
(%chromium-origin): Update hash.
(%ungoogled-origin): Change back to canonical upstream.  Update hash.
 2020-03-04 11:20:41 +01:00
Efraim Flashner
12fe38a1d6
gnu: vim-guix-vim: Use copy-build-system. 
* gnu/packages/vim.scm (vim-guix-vim)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 12:04:52 +02:00
Efraim Flashner
94d53fbb07
gnu: editorconfig-vim: Use copy-build-system. 
* gnu/packages/vim.scm (editorconfig-vim)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 12:00:09 +02:00
Efraim Flashner
8e38ed1f04
gnu: vim-syntastic: Use copy-build-system. 
* gnu/packages/vim.scm (vim-syntastic)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
(neovim-syntastic): Same.
 2020-03-04 11:56:02 +02:00
Efraim Flashner
e114aa2060
gnu: vim-airline-themes: Use copy-build-system. 
* gnu/packages/vim.scm (vim-airline-themes)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 11:50:33 +02:00
Efraim Flashner
8423c6f3b2
gnu: vim-airline: Use copy-build-system. 
* gnu/packages/vim.scm (vim-airline)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 11:48:07 +02:00
Efraim Flashner
b274d2a6cb
gnu: vim-fugitive: Use copy-build-system. 
* gnu/packages/vim.scm (vim-fugitive)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 11:43:38 +02:00
Efraim Flashner
0b350f73fe
gnu: vim-context-filetype: Use copy-build-system. 
* gnu/packages/vim.scm (vim-context-filetype)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 11:41:11 +02:00
Efraim Flashner
84ec7b7009
gnu: vim-luna: Use copy-build-system. 
* gnu/packages/vim.scm (vim-luna)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 11:39:05 +02:00
Efraim Flashner
0db06e7da9
gnu: vim-scheme: Use copy-build-system. 
* gnu/packages/vim.scm (vim-scheme)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 11:36:24 +02:00
Efraim Flashner
f19e539c3e
gnu: vim-neosnippet: Use copy-build-system. 
* gnu/packages/vim.scm (vim-neosnippet)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 11:10:11 +02:00
Efraim Flashner
90d64d9ca9
gnu: vim-neosnippet-snippets: Use copy-build-system. 
* gnu/packages/vim.scm (vim-neosnippet-snippets)[build-system]: Switch
to copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 11:00:13 +02:00
Efraim Flashner
72194753d9
gnu: vim-neocomplete: Use copy-build-system. 
* gnu/packages/vim.scm (vim-neocomplete)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 10:56:47 +02:00
Efraim Flashner
4beac3a898
gnu: unicode-cldr-common: Use copy-build-system. 
* gnu/packages/unicode.scm (unicode-cldr-common)[build-system]: Switch
to copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 10:52:53 +02:00
Efraim Flashner
a18ed1711f
gnu: ucd: Use copy-build-system. 
* gnu/packages/unicode.scm (ucd)[build-system]: Switch to
copy-build-system.
[arguments]: Adjust accordingly.
 2020-03-04 10:52:52 +02:00
Efraim Flashner
790b66e34f
gnu: zziplib: Fix CVE-2018-16548. 
* gnu/packages/compression.scm (zziplib)[replacement]: New field.
(zziplib/fixed): New private variable.
* gnu/packages/patches/zziplib-CVE-2018-16548.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2020-03-04 10:52:52 +02:00
Roel Janssen
cc51c03ff8
gnu: Add fntsample. 
* gnu/packages/fontutils.scm (fntsample): New variable.
 2020-03-04 09:05:43 +01:00
Roel Janssen
5e860b6062
gnu: Add perl-pdf-api2. 
* gnu/packages/perl.scm (perl-pdf-api2): New variable.
 2020-03-04 09:05:39 +01:00
Julien Lepiller
4b759d3c54
gnu: josm: Update to 15937. 
* gnu/packages/geo.scm (josm): Update to 15937.
 2020-03-04 03:07:56 +01:00
Julien Lepiller
8c8c0c63ec
gnu: java-jmapviewer: Update ot 2.13. 
* gnu/packages/geo.scm (java-jmapviewer): Update to 2.13.
 2020-03-04 03:07:52 +01:00
Julien Lepiller
83c4c5027b
gnu: java-jsonp-api: Update to 1.1.6. 
* gnu/packages/java.scm (java-jsonp-api, java-jsonp-impl): Update to
1.1.6.
 2020-03-04 03:07:23 +01:00
Nicolas Goaziou
be54abc61d
gnu: wine-staging: Update to 5.3. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 5.3.
(wine-staging): Update hash.
 2020-03-03 19:23:17 +01:00
Nicolas Goaziou
3b11122f39
gnu: emacs-solarized-theme: Update to 1.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-solarized-theme): Update to 1.3.1.
 2020-03-03 19:20:17 +01:00
Nicolas Goaziou
53b48447a7
gnu: wine: Fix typo. 
* gnu/packages/wine.scm (wine): Fix typo.

This is a followup to d8104034bc.
 2020-03-03 17:33:28 +01:00