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Author SHA1 Message Date
Ben Woodcroft
a225db5293
gnu: vsearch: Update to 2.3.4. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.4.
 2016-12-10 10:45:13 +10:00
Ben Woodcroft
7922ab8fe8
gnu: pardre: Update to 1.1.5-1. 
* gnu/packages/bioinformatics.scm (pardre): update to 1.1.5-1.
[source]: Update source hash.
 2016-12-10 10:45:12 +10:00
Mark H Weaver
6b2921c3ac
gnu: linux-libre: Add fixes for CVE-2016-8655 et al. 
* gnu/packages/linux.scm (linux-libre, linux-libre-arm-generic):
Add patches for CVE-2016-8655 and the vulnerability described in
<http://seclists.org/oss-sec/2016/q4/644>.
 2016-12-09 18:36:21 -05:00
Mark H Weaver
1134e99d86
gnu: linux-libre@4.4: Add fixes for CVE-2016-8655 et al. 
* gnu/packages/linux.scm (linux-libre-4.4): Add patches for CVE-2016-8655 and
the vulnerability described in <http://seclists.org/oss-sec/2016/q4/644>.
 2016-12-09 18:36:03 -05:00
Ludovic Courtès
72c0b68780
gnu: libsoup: Update to 2.56.0. 
* gnu/packages/gnome.scm (libsoup): Update to 2.56.0.
 2016-12-10 00:10:30 +01:00
Ludovic Courtès
27991c97e6
offload: Allow testing machines that match a regexp. 
* guix/scripts/offload.scm (check-machine-availability): Add 'pred'
parameter and honor it.
(guix-offload): for the "test" sub-command, accept an extra 'regexp'
parameter.  Pass a second argument to 'check-machine-availability'.
 2016-12-09 23:12:06 +01:00
Ludovic Courtès
2b513387cd
offload: Test each machine only once. 
* guix/scripts/offload.scm (check-machine-availability)[build-machine=?]:
New procedure.
Add call to 'delete-duplicates'.
 2016-12-09 23:02:02 +01:00
Ludovic Courtès
bd8345777f
offload: Do not read ~/.ssh/known_hosts. 
* guix/scripts/offload.scm (open-ssh-session): Pass #:knownhosts to
'make-session'.
 2016-12-09 23:02:01 +01:00
Ben Woodcroft
fdf3a68d9e
gnu: ruby-sdoc: Update to 0.4.2. 
* gnu/packages/ruby.scm (ruby-sdoc): Update to 0.4.2.
[arguments]: Remove 'relax-minitest-requirement' phase, Add 'set-rubylib'
phase.
[native-inputs]: Add ruby-hoe.
 2016-12-10 07:51:47 +10:00
Ben Woodcroft
71596c3ce6
gnu: Adjust gemspec modifications for ruby-2.3.2. 
* gnu/packages/ruby.scm (ruby-mocha)[arguments]: Adjust 'substitute*' of
gemspec.
(ruby-domain-name)[arguments]: Likewise.
 2016-12-10 07:50:16 +10:00
Mark H Weaver
750778abd4
gnu: linux-libre: Update to 4.8.13. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.13.
 2016-12-09 15:13:22 -05:00
Mark H Weaver
33d6a2ff9f
gnu: linux-libre@4.4: Update to 4.4.37. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.37.
 2016-12-09 15:10:17 -05:00
Paul Garlick
f81c6a4932
gnu: gmsh: Update to 2.15.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-09 19:14:21 +01:00
Marius Bakke
dfdc92259b
gnu: libev: Update to 4.23. 
* gnu/packages/libevent.scm (libev): Update to 4.23.
 2016-12-09 18:23:05 +01:00
Ludovic Courtès
f80b4d2ce0
Merge remote-tracking branch 'origin/master' into staging 2016-12-09 18:11:14 +01:00
Ludovic Courtès
13b5f44b47
gnu: libepoxy: Add patch to avoid segfault when GL support is missing. 
* gnu/packages/patches/libepoxy-gl-null-checks.patch: New file.
* gnu/packages/gl.scm (libepoxy)[source]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-12-09 18:09:43 +01:00
Hartmut Goebel
2608e40988
daemon: Set ownership of kept build directories to the calling user. 
Fixes <http://bugs.gnu.org/15890>.

* nix/libstore/globals.hh (Settings) Add clientUid and clientGid.
* nix/nix-daemon/nix-daemon.cc (daemonLoop] Store UID and GID of the
  caller in settings.
* nix/libstore/build.cc (_chown): New function.
  (DerivationGoal::deleteTmpDir): Use it, change ownership of build
  directory if it is kept and the new owner is not root.
 2016-12-09 15:46:09 +01:00
Ludovic Courtès
d99ee3d923
gnu: ruby-sdoc: Really relax minitest version requirement. 
* gnu/packages/ruby.scm (ruby-sdoc)[arguments]: Adjust pattern in
'relax-minitest-requirement'.
 2016-12-09 15:39:13 +01:00
Hartmut Goebel
43e8824d3c
gnu: python-pyqt: Fix build by explicitly setting the stubsdir. 
* gnu/packages.qt.scm (python-pyqt, python2-pyqt)[arguments]: In phase
'configure' pass option --stubsdir.
 2016-12-09 13:04:17 +01:00
Hartmut Goebel
931eaeaad9
gnu: python-pyqt-5.5: Use non-inherited "configure" phase. 
This allows passing different options for 5.5 than for the main version
(which is currently 5.6).

* gnu/packages.qt.scm (python-pyqt-5.5, python2-pyqt-5.5)[arguments]: Copy
from (python-pyqt)[arguments].
 2016-12-09 13:04:17 +01:00
Hartmut Goebel
9fde877856
gnu: python2-pyqt-4: Change package name to python2-pyqt. 
* gnu/packages/qt.scm (python2-pyqt-4)[package]: Change "name"
python2-pyqt.
 2016-12-09 13:04:17 +01:00
Danny Milosavljevic
444a79b6fe
gnu: Add python-flask-restful-swagger. 
* gnu/packages/python.scm (python-flask-restful-swagger,
  python2-flask-restful-swagger): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-09 11:57:10 +01:00
Marius Bakke
fe3b8862cf
gnu: alot: Update to 0.4. 
* gnu/packages/mail.scm (alot): Update to 0.4.
[arguments]: Update python3 comment.
 2016-12-09 11:47:39 +01:00
Julien Lepiller
b1a3c533f3
gnu: php: Update to 7.0.14. 
* gnu/packages/php.scm (php): Update to 7.0.14.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-09 09:58:36 +01:00
Leo Famulari
e11fb2b862
gnu: parallel: Update 20161122. 
* gnu/packages/parallel.scm (parallel): Update to 20161122.
 2016-12-08 23:12:51 -05:00
rennes
1f6a73ee6b
gnu: Add gnome-system-monitor. 
* gnu/packages/gnome.scm (gnome-system-monitor): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-08 23:42:12 +01:00
Ludovic Courtès
13d5e8dae5
store: 'open-connection' no longer raises '&nar-error' for protocol errors. 
* guix/store.scm (open-connection): Guard body against 'nar-error?' and
re-raise as '&nix-connection-error'.
* tests/store.scm ("connection handshake error"): New test.
 2016-12-08 23:12:11 +01:00
ng0
0c69a17efd
gnu: Add epic5. 
* gnu/packages/irc.scm (epic5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-12-08 22:36:15 +02:00
Efraim Flashner
c32f0e3059
gnu: enlightenment: Update to 0.21.4. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.4.
 2016-12-08 21:45:37 +02:00
Efraim Flashner
80a92a0fb5
gnu: efl: Update to 1.18.4. 
* gnu/packages/enlightenment.scm (efl): Update to 1.18.4.
 2016-12-08 21:45:37 +02:00
Efraim Flashner
256470325b
gnu: tor: Update to 0.2.8.11. 
* gnu/packages/tor.scm (tor): Update to 0.2.8.11.
 2016-12-08 21:45:33 +02:00
Leo Famulari
cb5a32c022
gnu: imagemagick: Update to 6.9.6-7. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-7.
 2016-12-08 14:32:02 -05:00
Leo Famulari
57513498de
gnu: tcsh: Fix out of bounds read. 
* gnu/packages/patches/tcsh-fix-out-of-bounds-read.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/shells.scm (tcsh)[replacement]: New field.
(tcsh/fixed): New variable.
 2016-12-08 13:53:36 -05:00
José Miguel Sánchez García
a2c1dceadd
gnu: Add vis. 
* gnu/packages/text-editors.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-08 15:07:34 +01:00
Marius Bakke
a14061aae6
gnu: python-html5lib: Update to 1.0b10 [fixes CVE-2016-{9909,9910}]. 
* gnu/packages/python.scm (python-html5lib, python2-html5lib): Update to 1.0b10.
 2016-12-08 13:55:46 +01:00
Ben Woodcroft
1b7f17ef90
gnu: vsearch: Update to 2.3.3. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.3.
 2016-12-08 22:39:10 +10:00
Alex Kost
cb72d34348
gnu: libreoffice: Add 'libreoffice' symlink. 
* gnu/packages/libreoffice.scm (libreoffice)[arguments]: Adjust
'bin-install' phase to make 'libreoffice' symlink along with 'soffice'.

Co-authored-by: ng0 <ng0@libertad.pw>
 2016-12-08 12:32:52 +03:00
Alex Kost
a9c61335c9
gnu: Update 'geiser' hash and deprecate 'geiser-next'. 
* gnu/packages/emacs.scm (geiser)[source]: Update the hash (the release
tarball was updated in place).
(geiser-next): Deprecate.
 2016-12-08 12:32:52 +03:00
John Darrington
7b706a4930
gnu: Fix path to /etc/netconfig in libtirpc. 
* gnu/packages/onc-rpc.scm (libtirpc) [arguments]: Replace "/etc/netconfig"
with (string-append %output "/etc/netconfig")
 2016-12-08 08:30:57 +01:00
Ludovic Courtès
a69bc7071e
hydra: Fix wrong-num-args error when computing the cross jobs. 
Fixes a regression introduced in
dea91108cf.

* build-aux/hydra/gnu-system.scm (hydra-jobs)[cross-jobs](either): Add
third parameter and honor it.
 2016-12-08 00:28:48 +01:00
Ludovic Courtès
530b8bda1f
hydra: Adjust to make-bootstrap.scm change. 
This is a followup to commit f13f60cb26.

* build-aux/hydra/gnu-system.scm (%core-packages): Call
'%glibc-bootstrap-tarball' since it's now a thunk, not a package.
 2016-12-08 00:28:48 +01:00
Ludovic Courtès
0a050ebc35
hydra: Use '%final-inputs' from base.scm, not commencement.scm. 
* build-aux/hydra/gnu-system.scm (package->job): Use the '%final-inputs'
procedure from (gnu packages base).
 2016-12-08 00:28:47 +01:00
Adonay Felipe Nogueira
c451474488
gnu: samba: Don't expect configuration files inside the store. 
Fixes <http://bugs.gnu.org/24834>.

* gnu/packages/samba.scm (samba)[arguments]: Add --sysconfdir configure flag.
Add 'disable-etc-samba-directory-creation' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-08 00:28:47 +01:00
José Miguel Sánchez García
35cdc267ae
gnu: Add lua-lpeg. 
* gnu/packages/lua.scm (lua-lpeg): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-07 23:20:24 +01:00
José Miguel Sánchez García
db913ac431
gnu: Add libtermkey. 
* gnu/packages/terminals.scm (libtermkey): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-07 23:09:49 +01:00
Ludovic Courtès
3593e5d5c5
gnu: cross-base: Move phases to (gnu build cross-toolchain). 
* gnu/packages/cross-base.scm (cross-gcc-arguments) <#:phases>: Use
'cross-gcc-build-phases', and move body cross-toolchain.scm.
(cross-gcc): Add #:imported-modules.  Add (gnu build cross-toolchain) to
 #:modules.
* gnu/build/cross-toolchain.scm: New file, with code from
'cross-gcc-arguments'.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-12-07 21:52:26 +01:00
Ludovic Courtès
3009a9e451
gnu: cross-base: Factorize list of cross environment variables. 
* gnu/packages/cross-base.scm (cross-libc): Replace literal list of
environment variable names with %GCC-CROSS-INCLUDE-PATHS.
(cross-kernel-headers): Likewise.
 2016-12-07 21:52:26 +01:00
Efraim Flashner
8a3ce2c7b0
gnu: ams-lv2: Remove CPU optimization flags on non-Intel hardware. 
* gnu/packages/music.scm (ams-lv2)[arguments]: Add phase to remove
Intel specific CPU optimization flags when compiling on non-Intel
hardware.
 2016-12-07 21:38:43 +02:00
Danny Milosavljevic
bb4b17064d
gnu: python-sqlalchemy-utils: Update to 0.32.11. 
* gnu/packages/python.scm (python-sqlalchemy-utils): Update to 0.32.11.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-07 18:51:46 +01:00
Danny Milosavljevic
1ed21519f7
gnu: Add python-sadisplay. 
* gnu/packages/python.scm (python-sadisplay, python2-sadisplay): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-07 14:20:46 +01:00