Commit graph

62593 commits

Author SHA1 Message Date
Ricardo Wurmus
affb4ab351
gnu: r-reactomepa: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.32.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:20:01 +02:00
Ricardo Wurmus
29b1702799
gnu: r-graphite: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.34.0.
2020-06-13 01:20:01 +02:00
Ricardo Wurmus
e09ca033f4
gnu: r-biobroom: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:20:01 +02:00
Ricardo Wurmus
c8cbde9ff6
gnu: r-bioassayr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.26.0.
2020-06-13 01:20:01 +02:00
Ricardo Wurmus
06908a73fc
gnu: r-chemminer: Update to 3.40.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.40.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:20:01 +02:00
Ricardo Wurmus
d0badcc180
gnu: r-bigpint: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.4.0.
[propagated-inputs]: Add r-delayedarray and r-summarizedexperiment.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
eef9c99cd8
gnu: r-bigmemoryextras: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.36.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
f31edb0191
gnu: r-biggr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.24.0.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
3116998610
gnu: r-hyperdraw: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.40.0.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
0ff724616b
gnu: r-hypergraph: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.60.0.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
d65bdbb2cb
gnu: r-rsbml: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.46.0.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
a54fd40994
gnu: r-bifet: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.8.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
7642517336
gnu: r-bicare: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.46.0.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
2415576ecb
gnu: r-bhc: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.40.0.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
de91f15a74
gnu: r-bgx: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.0.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
296992be08
gnu: r-bgmix: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.48.0.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
a9148d0686
gnu: r-unifiedwmwqpcr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.24.0.
2020-06-13 01:20:00 +02:00
Ricardo Wurmus
518050a75b
gnu: r-htqpcr: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.42.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
fbbaf5ae64
gnu: r-variancepartition: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
41f7fe4aa9
gnu: r-variantfiltering: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.24.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
49dd504192
gnu: r-timeseriesexperiment: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.6.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
12b255f213
gnu: r-wavcluster: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
efb44ebca4
gnu: r-reqon: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.34.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
83b7625cae
gnu: r-seqbias: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.36.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
8112796db1
gnu: r-bigmelon: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.14.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
f4954b0b57
gnu: r-gdsfmt: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
939ace9624
gnu: r-watermelon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.32.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
cad8a5099a
gnu: r-roc: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.64.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
b32808831c
gnu: r-genie3: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus
e677c9b501
gnu: r-cicero: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
93235b1eb3
gnu: r-rcistarget: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.8.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
af66e35d31
gnu: r-depecher: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
7bec32fe53
gnu: r-mixomics: Update to 6.12.1.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.1.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
32bd0295c8
gnu: r-flowsom: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.20.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
8d5a83b7c6
gnu: r-cytoml: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.0.
[propagated-inputs]: Remove r-ncdfflow; add r-rcpparmadillo, r-rhdf5lib, and
r-tibble.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
8f5e16742d
gnu: r-opencyto: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.0.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
372caae6a9
gnu: r-flowstats: Update to 4.0.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.0.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
a9af09df17
gnu: r-flowworkspace: Update to 4.0.3.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.3.
[propagated-inputs]: Remove r-flowviz, r-gridextra, and r-rcolorbrewer; add
r-ggplot2, r-rcpparmadillo, r-rhdf5lib, and r-xml.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
bafade83c1
gnu: r-rprotobuflib: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.0.0.
[arguments]: Adjust phase "unpack-bundled-sources".
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
b347d6c32b
gnu: r-flowclust: Update to 3.26.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.26.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
062789b87a
gnu: r-flowviz: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.52.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
3407dfa61f
gnu: r-ggcyto: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.16.0.
[propagated-inputs]: Add r-hexbin.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus
631b12ca71
gnu: r-ncdfflow: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.34.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus
76b163d616
gnu: r-flowmeans: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.48.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus
faff2de0da
gnu: r-flowcore: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.0.1.
[propagated-inputs]: Add r-rcpparmadillo and r-rprotobuflib.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus
3c73d7c5e4
gnu: r-cytolib: Update to 2.0.3.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.0.3.
[inputs]: Add zlib.
[propagated-inputs]: Add r-bh, r-rcpp, r-rcpparmadillo, r-rcppparallel,
r-rhdf5lib, and r-rprotobuflib.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus
0c2573e7f1
gnu: r-consensusclusterplus: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.52.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus
6954950f4a
gnu: r-flowutils: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.52.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus
5d63f69be9
gnu: r-rsubread: Update to 2.2.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.2.
[propagated-inputs]: Add r-matrix.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus
5ca991bff9
gnu: r-annotatr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00