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Author SHA1 Message Date
Leo Famulari
b7f53df78d
gnu: linux-libre 5.15: Update to 5.15.87. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.87.
(linux-libre-5.15-pristine-source): Update hash.
 2023-01-13 00:44:20 -05:00
Leo Famulari
1d39dd2484
gnu: linux-libre: Update to 6.0.19. 
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.19.
(linux-libre-6.0-pristine-source): Update hash.
 2023-01-13 00:44:19 -05:00
Leo Famulari
f827f1058d
gnu: linux-libre 6.1: Update to 6.1.5. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.5.
(linux-libre-6.1-pristine-source): Update hash.
 2023-01-13 00:44:16 -05:00
Marius Bakke
7f7907335d
gnu: python-cellbender: Update source hash. 
The git tag was moved in-place from d82893c05b4e6b912f7f165dc2cd7c36f29cfc52
to d92cfc5a55c8b1771348468035993c52df975170.

* gnu/packages/bioinformatics.scm (python-cellbender)[source](sha256): Update.
 2023-01-13 03:19:40 +01:00
Marius Bakke
54bc89ffc1
gnu: rdma-core: Update to 44.0. 
* gnu/packages/linux.scm (rdma-core): Update to 44.0.
 2023-01-13 03:19:40 +01:00
Marius Bakke
8f18bad2aa
gnu: rdma-core: Remove input labels. 
* gnu/packages/linux.scm (rdma-core)[arguments]: Don't reference rst2man by
label.  Reindent.
[native-inputs, inputs]: Remove labels.
 2023-01-13 03:19:40 +01:00
Marius Bakke
ffb9813aee
gnu: ovmf-arm: Fix syntax error on armhf-linux. 
* gnu/packages/firmware.scm (ovmf-arm)[arguments]: Don't add an empty set-env
phase when building for armhf-linux.
 2023-01-13 03:19:40 +01:00
Marius Bakke
2a93b66882
gnu: ovmf-aarch64: Fix syntax error on aarch64-linux. 
* gnu/packages/firmware.scm (ovmf-aarch64)[arguments]: Don't add an empty
set-env phase when building for aarch64.
 2023-01-13 03:19:39 +01:00
Marius Bakke
8d813a7eba
gnu: ungoogled-chromium: Update to 109.0.5414.74-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M109.
(%chromium-version): Set to 109.0.5414.74.
(%arch-revision): Bump to latest.
(%arch-patches): Add one patch.
(%ungoogled-origin): Update hash.
(ungoogled-chromium)[source]: Likewise.
[arguments]: Disable H264 for WebRTC.  Delete one directory.  Remove obsolete
substitution.
[native-inputs]: Add PYTHON-PYYAML.
 2023-01-13 03:19:39 +01:00
Petr Hodina
505d7ce025
gnu: Add dislocker. 
* gnu/packages/linux.scm (dislocker): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-12 23:31:47 +01:00
Petr Hodina
b74e5283bb
gnu: Add hydra. 
* gnu/packages/password-utils.scm (hydra): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-12 23:30:06 +01:00
Nicolas Graves
f558e14199
gnu: guile-aa-tree: Update Guile version to 3.0 . 
* gnu/packages/guile-xyz.scm (guile-aa-tree): Update Guile version to 3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-12 23:20:32 +01:00
Nicolas Graves
27c4cbb571
gnu: guile-aa-tree: Restrict install to aa-tree.scm. 
* gnu/packages/guile-xyz.scm (guile-aa-tree):
  [native-inputs]: Remove guile-2.2.
  [inputs]: Add guile-2.2.
  [arguments]: (scheme-file-regexp): Restrict install to aa-tree.scm
  [arguments]: (phases): Add check phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-12 23:19:42 +01:00
Ludovic Courtès
5a427d44ef
gnu: gloo: Add dependency on rdma-core. 
* gnu/packages/machine-learning.scm (gloo)[inputs]: Add RDMA-CORE when
supported.
[arguments]: Pass '-DUSE_IBVERBS=ON' when RDMA-CORE is present.  Switch
to gexps.
 2023-01-12 23:14:44 +01:00
Ludovic Courtès
69ed95efaa
gnu: gloo: Build the shared library only. 
* gnu/packages/machine-learning.scm (gloo)[arguments]: Pass
'-DBUILD_SHARED_LIBS=ON'.
 2023-01-12 23:14:44 +01:00
Ludovic Courtès
88572ededc
gnu: gromacs: Mark as tunable. 
* gnu/packages/chemistry.scm (gromacs)[properties]: New field.
 2023-01-12 23:14:44 +01:00
Simon Tournier
483bc044eb
gnu: Add cellsnp-lite. 
* gnu/packages/bioinformatics.scm (cellsnp-lite): New variable.
 2023-01-12 21:37:56 +01:00
Arun Isaac
98ef4ab23e
gnu: guile-email-latest: Remove package. 
* gnu/packages/guile-xyz.scm (guile-email-latest): Delete variable.
* gnu/packages/mail.scm (mumi)[inputs]: Replace guile-email-latest with
guile-email.
 2023-01-12 21:22:57 +01:00
Ricardo Wurmus
2a2b494370
gnu: Add r-jqr. 
* gnu/packages/cran.scm (r-jqr): New variable.
 2023-01-12 21:22:57 +01:00
Guillaume Le Vaillant
ef0613a81d
gnu: monero-gui: Add menu entry file. 
* gnu/packages/finance.scm (monero-gui)[arguments]: Update 'install' phase to
  add icons and menu entry file.
 2023-01-12 14:06:00 +01:00
Kaelyn Takata
4171b01808
gnu: Remove xfce4-embed-plugin. 
The last release of this plugin appears to be 2015, and the package no
longer builds as it depends on libxfce4ui-1 which was removed when gtk+-2
support was dropped in 2019.

* gnu/packages/xfce.scm (xfce4-embed-plugin): Delete variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-01-12 14:25:50 +08:00
Kaelyn Takata
740eb6d7a9
gnu: Remove xfce4-equake-plugin. 
The last release of this plugin appears to be 2013, and the package no
longer builds as it depends on libxfce4ui-1 which was removed when gtk+-2
support was dropped in 2019.

* gnu/packages/xfce.scm (xfce4-equake-plugin): Delete variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-01-12 14:24:04 +08:00
jgart
9fd69e3e4f
gnu: kirc: Update to 0.3.2. 
* gnu/packages/irc.scm (kirc): Update to 0.3.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-01-12 11:41:48 +08:00
Andy Tai
33e82ce84f
gnu: xpra: Update to 4.4.3. 
gnu/packages/xorg.scm (xpra): Update to 4.4.3.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-01-12 11:34:15 +08:00
jgart
832f577734
gnu: litterbox: Update to 1.9. 
* gnu/packages/irc.scm (litterbox): Update to 1.9.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-01-12 11:19:01 +08:00
jgart
dc987fcf54
gnu: catgirl: Update to 2.1. 
* gnu/packages/irc.scm (catgirl): Update to 2.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-01-12 11:15:18 +08:00
Sébastien Helleu
501b80afad
gnu: weechat: Update to 3.8. 
* gnu/packages/irc.scm (weechat): Update to 3.8.
[arguments]: Do not build tests any more: since version 3.8, ‘make test’
is successful when tests are not built.
[native-inputs]: Remove dependency on cpputest as tests are not built
any more.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-01-12 11:00:53 +08:00
Maxim Cournoyer
5e4ec82181
gnu: emacs-enh-ruby-mode: Fix base version to 20191111. 
* gnu/packages/emacs-xyz.scm (emacs-enh-ruby-mode): Fix base version to
20191111.

Reported-by: Jelle Licht <jlicht@fsfe.org>
 2023-01-11 08:34:33 -05:00
jgart
a8b2decf28
gnu: Add ghc-parsec. 
* gnu/packages/haskell-xyz.scm (ghc-parsec): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-01-11 10:44:56 +00:00
Maxim Cournoyer
24ad9a9a48
gnu: Add emacs-enh-ruby-mode. 
* gnu/packages/emacs-xyz.scm (emacs-enh-ruby-mode): New variable.
 2023-01-10 22:06:35 -05:00
Tobias Geerinckx-Rice
00ba3ad4c3
gnu: muse-sequencer: Also run on Wayland. 
* gnu/packages/music.scm (muse-sequencer)[inputs]: Add qtwayland-5.

Reported by f1refly in #guix.
 2023-01-08 01:00:23 +01:00
Arun Isaac
cfd48888db
gnu: weechat-wee-slack: Update to 2.9.1. 
* gnu/packages/messaging.scm (weechat-wee-slack): Update to 2.9.1.
 2023-01-10 16:58:22 +00:00
Maxim Cournoyer
1ab92e8659
gnu: Add waveshare-dtoverlays. 
* gnu/packages/raspberry-pi.scm (waveshare-dtoverlays): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-10 11:49:46 -05:00
Maxim Cournoyer
c42ae60a84
gnu: patman: Fix incomplete get-maintainer patch. 
The full set of patches already merged into the U-Boot is included for
simplicity and avoiding mistakes like the previous one, where a conflicting
hunk got dropped, causing the following error when running patman:

    WARNING: Unknown setting get_maintainer_script

* gnu/packages/bootloaders.scm (u-boot) [source]: Replace the
u-boot-patman-fix-help.patch, u-boot-patman-local-conf.patch and
u-boot-patman-get-maintainer.patch with u-boot-patman-guix-integration.patch.
* gnu/local.mk (dist_patch_DATA): Update patch registrations.
* gnu/packages/patches/u-boot-patman-fix-help.patch: Delete file.
* gnu/packages/patches/u-boot-patman-get-maintainer.patch: Likewise.
* gnu/packages/patches/u-boot-patman-local-conf.patch: Likewise.
* gnu/packages/patches/u-boot-patman-guix-integration.patch: New file.

Reported-by: Jelle Licht <jlicht@fsfe.org>
 2023-01-10 11:37:29 -05:00
muradm
dc403ec7f1
gnu: services: Fix fail2ban configuration serialization. 
This fixes a regression from 543d971ed2 whereby
match-lambda due to configuration field reordering.

* gnu/services/security.scm:
[serialize-fail2ban-ignore-cache-configuration]: Switch to match-record.
[serialize-fail2ban-jail-filter-configuration]: Switch to match-record.
[serialize-fail2ban-jail-action-configuration]: Switch to match-record.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-10 10:47:27 -05:00
Efraim Flashner
d0942bfd2d
gnu: onedrive: Update to 2.4.23. 
* gnu/packages/sync.scm (onedrive): Update to 2.4.23.
 2023-01-10 13:01:37 +02:00
Alex Devaure
4b50dccc63
gnu: darktable: Update to 4.2.0. 
* gnu/packages/photo.scm (darktable): Update to 4.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Abhishek Cherath
5ef6d3ea11
gnu: Add guile-scheme-json-rpc. 
* gnu/packages/guile-xyz.scm (guile-scheme-json-rpc): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Paul A. Patience
35eaba00e6
gnu: Add gophernicus. 
* gnu/packages/web.scm (gophernicus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Paul A. Patience
0c0dc72ac0
gnu: Add vger. 
* gnu/packages/web.scm (vger): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Giacomo Leidi
5f63811032
services: unattended-upgrade: Add 'operating-system-expression' field. 
* gnu/services/admin.scm (<unattended-upgrade-configuration>)
[operating-system-expression]: New field.
(unattended-upgrade-mcron-jobs): Honor it.
* doc/guix.texi (Unattended Upgrades): Document it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:14 +01:00
Bruno Victal
22e9b01bda
services: git-daemon: Deprecate 'git-daemon-service' procedure. 
* gnu/services/version-control.scm
(git-daemon-service): Define with 'define-deprecated'
* doc/guix.texi (Version Control Services): Replace with
'git-daemon-service-type'

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:13 +01:00
Luis Henrique Gomes Higino
7ebeafff15
gnu: neovim: Update to 0.8.2. 
* gnu/packages/vim.scm (neovim): Update to 0.8.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-10 11:49:13 +01:00
Ludovic Courtès
04bf1d9634
gnu: gromacs: Remove input labels and use gexps. 
* gnu/packages/chemistry.scm (gromacs)[arguments]: Turn into gexps.
[native-inputs]: Remove labels.  Remove (package-source googletest).
 2023-01-10 11:49:13 +01:00
Ludovic Courtès
7934e9c556
gnu: gromacs: Update to 2022.4. 
* gnu/packages/chemistry.scm (gromacs): Update to 2022.4.
* gnu/packages/patches/gromacs-tinyxml2.patch: Adjust accordingly.
 2023-01-10 11:49:13 +01:00
Jonathan Brielmaier
9b9004253b
gnu: keepassxc: Enable wayland support. 
* gnu/packages/password-utils.scm (keepassxc)[inputs]: Add qtwayland-5.
 2023-01-10 10:39:44 +01:00
Artyom V. Poptsov
5f7ce22201
gnu: Add ftxui. 
* gnu/packages/cpp.scm (ftxui): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-10 09:14:53 +01:00
Tobias Geerinckx-Rice
27e40a4463
gnu: bind: Update to 9.16.36. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.36.
 2023-01-08 01:00:02 +01:00
Tobias Geerinckx-Rice
6106044849
gnu: linux-libre: Bump max-silent-time even further. 
Aarch64 CI build still fail with ‘timed out after 3600 seconds of
silence’.

* gnu/packages/linux.scm (make-linux-libre*):
Increase the max-silent-time to 3 hours.

Reported by akirakyle in #guix.
 2023-01-08 01:00:02 +01:00
Tobias Geerinckx-Rice
03829e066d
gnu: emacs-hsluv: Name git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-hsluv)[source]: Specify a FILE-NAME.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice
080c651a63
gnu: emacs-hide-lines: Name git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-hide-lines)[source]: Specify a FILE-NAME.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice
ec89b1ae16
gnu: emacs-syslog-mode: Name git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-syslog-mode)[source]: Specify a FILE-NAME.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice
ce1db7a544
gnu: fbcat: Fix typo in description. 
* gnu/packages/linux.scm (fbcat)[description]: Fix ‘therof’.  Add newline.
 2023-01-08 01:00:00 +01:00
Marius Bakke
79a9bb25bc
gnu: perftest: Update to 4.5-0.20. 
* gnu/packages/linux.scm (perftest): Update to 4.5-0.20.
[source]: Switch to GIT-FETCH.
[arguments]: Remove.
[native-inputs]: Add AUTOCONF, AUTOMAKE, and LIBTOOL.
[inputs]: Add PCIUTILS.
 2023-01-10 00:14:43 +01:00
Marius Bakke
73d5abd003
gnu: lib3mf: Update to 2.2.0. 
* gnu/packages/engineering.scm (lib3mf): Update to 2.2.0.
 2023-01-10 00:14:43 +01:00
Marius Bakke
f29a17c84b
gnu: lib3mf: Remove bundled software. 
* gnu/packages/engineering.scm (lib3mf)[source](snippet): Delete bundled
copies of libzip and zlib.  Adjust header inclusions.
 2023-01-10 00:14:43 +01:00
Marius Bakke
5e36d4381f
gnu: lib3mf: Remove input labels. 
* gnu/packages/engineering.scm (lib3mf)[inputs]: Remove labels.
 2023-01-10 00:14:43 +01:00
Marius Bakke
5e101ab56f
gnu: lib3mf: Remove bundled ACT. 
* gnu/packages/engineering.scm (lib3mf)[source](modules, snippet): New fields.
[arguments]: Add phase to provide act binary.
[native-inputs]: Add AUTOMATIC-COMPONENT-TOOLKIT.
 2023-01-10 00:14:43 +01:00
Marius Bakke
df33c8de73
gnu: Add automatic-component-toolkit. 
* gnu/packages/code.scm (automatic-component-toolkit): New variable.
 2023-01-10 00:14:42 +01:00
Ricardo Wurmus
8423ca9da8
gnu: r-biocset: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.12.1.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus
8ee7f8df76
gnu: r-biocviews: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.2.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus
d41e85678a
gnu: r-variancepartition: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.1.
[propagated-inputs]: Add r-remacor.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus
850638df5a
gnu: r-flowworkspace: Update to 4.10.1. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.10.1.
[propagated-inputs]: Remove r-aws-s3, r-aws-signature, r-digest, r-lattice,
r-latticeextra, r-rcpp, r-rcpparmadillo, and r-rcppparallel; add
r-cpp11.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus
3ac0f4e62c
gnu: r-batchelor: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.14.1.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus
aca59da931
gnu: r-msnbase: Update to 2.24.2. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.24.2.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus
f5629558b1
gnu: r-genomeinfodb: Update to 1.34.6. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.6.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus
b37a9bfba6
gnu: r-bsgenome: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.2.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus
3072990b03
gnu: r-biocparallel: Update to 1.32.5. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.5.
 2023-01-09 23:07:58 +01:00
Ricardo Wurmus
349d110ae0
gnu: Add r-remacor. 
* gnu/packages/cran.scm (r-remacor): New variable.
 2023-01-09 23:06:16 +01:00
Ricardo Wurmus
8e864f2a3b
gnu: Add r-clustergeneration. 
* gnu/packages/cran.scm (r-clustergeneration): New variable.
 2023-01-09 23:06:05 +01:00
Ricardo Wurmus
51e79fe737
gnu: Update copyright header. 
* gnu/packages/cran.scm: Update copyright header.
 2023-01-09 22:34:58 +01:00
Ricardo Wurmus
387c486591
gnu: r-fpc: Update to 2.2-10. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-10.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus
bd0da7c791
gnu: r-statmod: Update to 1.5.0. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.5.0.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus
1e3990d313
gnu: r-sendmailr: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-sendmailr): Update to 1.3-2.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus
8c33135953
gnu: r-bien: Update to 1.2.6. 
* gnu/packages/cran.scm (r-bien): Update to 1.2.6.
[propagated-inputs]: Remove r-rgdal, r-rgeos, and r-sp; add r-terra.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus
5aacc2bd98
gnu: r-rtweet: Update to 1.1.0. 
* gnu/packages/cran.scm (r-rtweet): Update to 1.1.0.
[propagated-inputs]: Add r-httr2.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus
fa0dc85d40
gnu: r-mlr3learners: Update to 0.5.6. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.6.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus
302f55fd9d
gnu: r-qtl: Update to 1.58. 
* gnu/packages/cran.scm (r-qtl): Update to 1.58.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus
848c318aa0
gnu: r-tidytext: Update to 0.4.1. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.4.1.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus
63921834e9
gnu: r-forecast: Update to 8.20. 
* gnu/packages/cran.scm (r-forecast): Update to 8.20.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus
20e6139df3
gnu: r-qqconf: Update to 1.3.1. 
* gnu/packages/cran.scm (r-qqconf): Update to 1.3.1.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
dcf8c29277
gnu: r-gkmsvm: Update to 0.82.0. 
* gnu/packages/cran.scm (r-gkmsvm): Update to 0.82.0.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
a2c77eec88
gnu: r-lavaan: Update to 0.6-13. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-13.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
8b7de31e7a
gnu: r-rncl: Update to 0.8.7. 
* gnu/packages/cran.scm (r-rncl): Update to 0.8.7.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
b24219443d
gnu: r-fmsb: Update to 0.7.5. 
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.5.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
4e69d047c8
gnu: r-rgl: Update to 0.111.6. 
* gnu/packages/cran.scm (r-rgl): Update to 0.111.6.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
4f9b35d55c
gnu: r-ncdf4: Update to 1.21. 
* gnu/packages/cran.scm (r-ncdf4): Update to 1.21.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
1ce7003fb1
gnu: r-afex: Update to 1.2-1. 
* gnu/packages/cran.scm (r-afex): Update to 1.2-1.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
c63bbd4348
gnu: r-raster: Update to 3.6-13. 
* gnu/packages/cran.scm (r-raster): Update to 3.6-13.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
fd82a783eb
gnu: r-drtmle: Update to 1.1.2. 
* gnu/packages/cran.scm (r-drtmle): Update to 1.1.2.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
8b322c5967
gnu: r-netrep: Update to 1.2.6. 
* gnu/packages/cran.scm (r-netrep): Update to 1.2.6.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
8d696f2728
gnu: r-precrec: Update to 0.14.1. 
* gnu/packages/cran.scm (r-precrec): Update to 0.14.1.
[propagated-inputs]: Add r-rlang.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
fa9f02dc9f
gnu: r-writexl: Update to 1.4.2. 
* gnu/packages/cran.scm (r-writexl): Update to 1.4.2.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
c7d61d2077
gnu: r-officer: Update to 0.5.1. 
* gnu/packages/cran.scm (r-officer): Update to 0.5.1.
[propagated-inputs]: Add r-openssl.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
18ea1e2085
gnu: r-billboarder: Update to 0.4.0. 
* gnu/packages/cran.scm (r-billboarder): Update to 0.4.0.
[native-inputs]: Update js-billboard to 3.6.3.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
3090a07f90
gnu: r-reticulate: Update to 1.27. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.27.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
0943ee5c9c
gnu: r-rastervis: Update to 0.51.5. 
* gnu/packages/cran.scm (r-rastervis): Update to 0.51.5.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
e758675070
gnu: r-heatmaply: Update to 1.4.2. 
* gnu/packages/cran.scm (r-heatmaply): Update to 1.4.2.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
407f58a9ad
gnu: r-expm: Update to 0.999-7. 
* gnu/packages/cran.scm (r-expm): Update to 0.999-7.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
a161409264
gnu: r-zlog: Update to 1.0.2. 
* gnu/packages/cran.scm (r-zlog): Update to 1.0.2.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
f05c1a46ff
gnu: r-seriation: Update to 1.4.1. 
* gnu/packages/cran.scm (r-seriation): Update to 1.4.1.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
77895d9d6b
gnu: r-mitml: Update to 0.4-4. 
* gnu/packages/cran.scm (r-mitml): Update to 0.4-4.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
ba4117bf61
gnu: r-timedate: Update to 4022.108. 
* gnu/packages/cran.scm (r-timedate): Update to 4022.108.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
8c83db6a38
gnu: r-lava: Update to 1.7.1. 
* gnu/packages/cran.scm (r-lava): Update to 1.7.1.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
47184a91f1
gnu: r-rstpm2: Update to 1.5.9. 
* gnu/packages/cran.scm (r-rstpm2): Update to 1.5.9.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
15b612a328
gnu: r-htmlwidgets: Update to 1.6.1. 
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.6.1.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
b147c4a7f3
gnu: r-collections: Update to 0.3.7. 
* gnu/packages/cran.scm (r-collections): Update to 0.3.7.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
b688e283dc
gnu: Add r-httr2. 
* gnu/packages/cran.scm (r-httr2): New variable.
 2023-01-09 22:30:42 +01:00
Greg Hogan
84f117f495
gnu: LLVM, Clang, libomp, lld: Update to 15.0.6. 
* gnu/packages/llvm.scm (llvm-15, clang-15, libomp-15, lld-15):
Update to 15.0.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-09 17:40:54 +01:00
Vivien Kraus
735e915bbd
gnu: Add minetest-mobs-monster. 
* gnu/packages/minetest.scm (minetest-mobs-monster): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-09 17:40:54 +01:00
Vivien Kraus
e8b90b1d5d
gnu: Add minetest-wielded-light. 
* gnu/packages/minetest.scm (minetest-wielded-light): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-09 17:40:54 +01:00
Mathieu Othacehe
8b314efd50
services: base: Add environment support to guix-configuration. 
* gnu/services/base.scm (<guix-configuration>)[extra-env]: New field.
(guix-shepherd-service): Honor it.
* doc/guix.texi (Base Services): Document it.
 2023-01-09 17:15:28 +01:00
Ricardo Wurmus
de48bcee07
gnu: Add r-gg3d. 
* gnu/packages/bioinformatics.scm (r-gg3d): New variable.
 2023-01-09 14:50:26 +01:00
Andrew Tropin
35ecbb418c
home: environment-variables: Fix escaping. 
* gnu/home/services.scm (environment-variable-shell-definitions): Fix
escaping.
* tests/guix-home.sh: Add STRING_WITH_ESCAPES environment variable and test
its value.

Reported-by: elevnkb
 2023-01-09 12:22:56 +04:00
Andrew Tropin
2acce55a00
home: environment-variables: Return support for file-likes and gexps. 
* gnu/home/services.scm (environment-variable-shell-definitions): Add support
for file-likes and gexps.
* tests/guix-home.sh: Add SHELL environment variable and test its value.  Add
BUILDHOSTTIME environment variable.
 2023-01-09 12:03:32 +04:00
Marius Bakke
d0044216c9
gnu: ikiwiki: Remove input labels. 
* gnu/packages/web.scm (ikiwiki)[native-inputs, inputs]: Remove labels.
 2023-01-09 08:55:10 +01:00
Marius Bakke
37aeb85f45
gnu: ikiwiki: Add missing inputs. 
This fixes a regression from a1f9eba892 whereby
loading po4a as a library fails.

* gnu/packages/web.scm (ikiwiki)[inputs]: Add PERL-SYNTAX-KEYWORD-TRY and
PERL-XS-PARSE-KEYWORD.
 2023-01-09 08:55:09 +01:00
Marius Bakke
1efe7de096
gnu: python-afdko: Fix failing tests. 
* gnu/packages/patches/python-afdko-suppress-copyright-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fontutils.scm (python-afdko)[source](patches): New field.
 2023-01-09 08:55:09 +01:00
Ricardo Wurmus
2463e9f1fe
gnu: Remove java-ecj-3. 
* gnu/packages/java.scm (java-ecj-3): Remove variable.
 2023-01-09 00:50:29 +01:00
Ricardo Wurmus
9e14a7b4d2
gnu: ant-junit: Fix inheritance by using gexp. 
* gnu/packages/java.scm (ant-junit)[arguments]: Use gexp; also remove
trailing #T from build phases.
 2023-01-09 00:45:06 +01:00
Ricardo Wurmus
f05d228472
gnu: ant-apache-bcel: Fix inheritance by using gexp. 
* gnu/packages/java.scm (ant-apache-bcel)[arguments]: Use gexp; also remove
trailing #T from build phases.
 2023-01-09 00:44:26 +01:00
Ricardo Wurmus
882baf4b7d
gnu: java-cisd-jhdf5: Do not override default JDK. 
* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Remove override for JDK.
 2023-01-09 00:40:19 +01:00
Ricardo Wurmus
a4eb83fee7
gnu: java-cisd-jhdf5: Remove trailing #T. 
* gnu/packages/java.scm (java-cisd-jhdf5)[source]: Remove trailing #T from
snippet.
[arguments]: Remove trailing #T from build phases.
 2023-01-09 00:39:43 +01:00
Ricardo Wurmus
3b62c2804c
gnu: java-ecj: Do not inherit from java-ecj-3. 
* gnu/packages/java.scm (java-ecj): Do not inherit fields from java-ecj-3.
[arguments]: Merge build phases 'fix-build.xml and 'fix-prop; remove trailing #T.
 2023-01-09 00:38:15 +01:00
Ricardo Wurmus
649ea550e7
gnu: Remove java-ecj-3.5. 
* gnu/packages/java.scm (java-ecj-3.5): Remove variable.
 2023-01-09 00:34:41 +01:00
Ricardo Wurmus
2703b6feef
gnu: java-cisd-args4j: Do not build with icedtea-7. 
* gnu/packages/java.scm (java-cisd-args4j)[arguments]: Do not override JDK.
 2023-01-09 00:33:39 +01:00
Ricardo Wurmus
f1babf56da
gnu: java-cisd-args4j: Use later version of ECJ. 
* gnu/packages/java.scm (java-cisd-args4j)[native-inputs]: Replace
java-ecj-3.5 with java-ecj.
 2023-01-09 00:33:02 +01:00
Ricardo Wurmus
84543eae06
gnu: java-cisd-args4j: Remove trailing #T from build phase. 
* gnu/packages/java.scm (java-cisd-args4j)[arguments]: Remove trailing #T from
build phase.
 2023-01-09 00:32:28 +01:00
Ricardo Wurmus
d977bb8d6b
gnu: java-jgit-4.2: Remove trailing #T from build phase. 
* gnu/packages/java.scm (java-jgit-4.2)[arguments]: Remove trailing #T from
build phase.
 2023-01-09 00:27:23 +01:00
Ricardo Wurmus
f206682903
gnu: java-jgit-4.2: Do not build with icedtea-7. 
* gnu/packages/java.scm (java-jgit-4.2)[arguments]: Do not override JDK.
 2023-01-09 00:27:23 +01:00
Ricardo Wurmus
aac0605de3
gnu: Move Java bootstrap packages to separate module. 
* gnu/packages/java.scm (ant/java8): Do not inherit from ant-bootstrap.
(ant)[arguments]: Replace to avoid rebuilding.
(jikes, classpath-bootstrap, jamvm-1-bootstrap, ant-bootstrap, ecj-bootstrap,
ecj-javac-wrapper, classpath-0.99, classpath-jamvm-wrappers, classpath-devel,
jamvm, ecj-javac-wrapper-final, ecj4-bootstrap, ecj4-javac-wrapper,
jamvm-with-ecj4): Move these packages from here...
* gnu/packages/java-bootstrap.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register new file.
 2023-01-09 00:01:04 +01:00
Ricardo Wurmus
a4d9ce5488
gnu: Move Java XML packages to new module. 
* gnu/packages/xml.scm (java-simple-xml, java-jaxp,
java-apache-xml-commons-resolver, java-jaxen, java-xom, java-xsdlib,
java-xpp3, java-xmlpull2, java-xmlpull-api-v1, java-dom4j, java-kxml2,
java-stax, java-jettison, java-jdom2, java-xstream, java-mxparser): Move these
variables from here...
* gnu/packages/java-xml.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register new file.
* gnu/packages/axoloti.scm,
gnu/packages/batik.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/groovy.scm,
gnu/packages/java.scm,
gnu/packages/maven.scm: Adjust module imports.
 2023-01-08 23:20:59 +01:00
Leo Famulari
064c5b7e45
gnu: Remove linux-libre 4.9. 
This kernel series is no longer supported upstream:
https://lkml.iu.edu/hypermail/linux/kernel/2301.0/06398.html
https://www.kernel.org/category/releases.html

* gnu/packages/aux-files/linux-libre/4.9-i686.conf,
gnu/packages/aux-files/linux-libre/4.9-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
* gnu/packages/linux.scm (linux-libre-4.9-version, linux-libre-4.9-gnu-revision,
deblob-scripts-4.9, linux-libre-4.9-pristine-source, linux-libre-4.9-source,
linux-libre-headers-4.9, linux-libre-4.9): Remove variables.
* gnu/tests/base.scm (%test-linux-libre-4.9): Likewise.
 2023-01-08 15:15:09 -05:00
Nicolas Goaziou
812ecf7ee6
gnu: tectonic: Update to 0.12.0. 
* gnu/packages/rust-apps.scm (tectonic): Update to 0.12.0.
* gnu/packages/crates-io.scm (rust-tectonic-bridge-graphite2): Update to
0.2.1.
[arguments]: Do not skip build.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add GRAPHITE2.
(rust-tectonic-bundles): Update to 0.3.
[arguments]: Do not skip build.
<#:cargo-inputs>: Update RUST-TECTONIC-IO-BASE to 0.4.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add OPENSSL and ZLIB.
(rust-tectonic-docmodel): Update to 0.2.0.
[arguments]: Do not skip build.
(rust-tectonic-engine-xetex): Update to 0.4.1.
[arguments]: Do not skip build.
<#:cargo-inputs>: Update RUST-TECTONIC-PDF-IO to 0.4 and
RUST-TECTONIC-XETEX-LAYOUT to 0.2.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add FONTCONFIG, FREETYPE, GRAPHITE2, ICU4C and ZLIB.
(rust-tectonic-engine-xdvipdfmx): Update to 0.4.0.
[arguments]: Do not skip build.
<#:cargo-inputs>: Remove RUST-CBINDGEN, update RUST-TECTONIC-BRIDGE-CORE to
0.3 and RUST-TECTONIC-PDF-IO to 0.4.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add LIBPNG and ZLIB.
(rust-tectonic-pdf-io): Update to 0.4.
[arguments]: Do not skip build.
<#:cargo-inputs>: Update RUST-TECTONIC-BRIDGE-CORE to 0.3.
(rust-tectonic-xetex-layout): Update to 0.2.1.
[arguments]: Do not skip build.
<#:cargo-inputs>: Update RUST-TECTONIC-BRIDGE-CORE to 0.3.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add FONTCONFIG, FREETYPE, GRAPHITE2, ICU4C and ZLIB.
 2023-01-08 19:32:15 +01:00
David Thompson
6ca59eec9a
gnu: git-annex: Patch 'git-annex webapp' to use hardcoded xdg-open. 
* gnu/packages/haskell-apps.scm (git-annex)[arguments]: Add 'patch-webapp'
phase.
[inputs]: Add xdg-utils.
 2023-01-08 13:25:34 -05:00
Mathieu Othacehe
8cca1a35bc
gnu: Switch to default pipewire. 
This is a follow-up of: 590700ce00.

* gnu/packages/kde-plasma.scm (kwin, plasma-desktop,
plasma-workspace)[inputs]: Switch to pipewire.
* gnu/packages/mpd.scm (mpd)[inputs]: Ditto.
 2023-01-08 18:12:15 +01:00
Bruno Victal
c2f47c968e
gnu: Remove tegaki package leftovers. 
Leftovers from ed3c97f53e.

* gnu/packages/languages.scm (tegaki-release-uri)
(remove-pre-compiled-files)
(remove-pre-compiled-files-modules): Delete variables.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-08 17:51:30 +01:00
Josselin Poiret via Guix-patches via
6d3a0b2f65
gnu: wireplumber: Update to 0.4.13. 
* gnu/packages/linux.scm (wireplumber): Update to 0.4.13.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-08 17:46:50 +01:00
Brendan Tildesley
619cb50199
gnu: pipewire: Enable more features. 
* gnu/packages/linux.scm (pipewire)[inputs]:
Add
- libfdk for ACC support over bluetooth
- libfreeaptx for aptX support over bluetooth
- libsndfile
- libusb for bluetooth support
- lilv for lv2 plugins
- webrtc-audio-processing for noise cancelling
- readline for pw-cli

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-08 17:46:50 +01:00
Brendan Tildesley
7a9edf4324
gnu: Add libfreeaptx. 
* gnu/packages/audio.scm (libfreeaptx): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-08 17:46:50 +01:00
Brendan Tildesley
62c446a4fd
gnu: pipewire: Set sysconfdir to /etc. 
* gnu/packages/linux.scm (pipewire): Set sysconfdir to /etc to allow for
systemwide config in /etc.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-08 17:46:50 +01:00
Josselin Poiret via Guix-patches via
a7ed4af304
gnu: pipewire: Update to 0.3.63. 
* gnu/packages/linux.scm (pipewire): Update to 0.3.63.
[source]: Update source to official repo.
[inputs]: Remove sdl2. It's only used to build examples.

Co-authored-by: Kevin Boulain <kevinboulain@gmail.com>
Co-authored-by: Brendan Tildesley <mail@brendan.scot>
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-08 17:46:49 +01:00
Brendan Tildesley
590700ce00
gnu: pipewire: Switch default to 0.3. 
* gnu/packages/linux.scm (pipewire): Switch to pipewire 0.3.
(pipewire-0.3): Remove variable.
(wireplumber): Replace all pipewire-0.3 by pipewire.
* gnu/packages/audio.scm (qpwgraph): Ditto.
* gnu/packages/chromium.scm (ungoogled-chromium): Ditto.
* gnu/packages/freedesktop.scm (weston, xdg-desktop-portal,
xdg-desktop-portal-wlr): Ditto.
* gnu/packages/gnome.scm (mutter): Ditto.
* gnu/packages/kde-systemtools.scm (krfb): Ditto.
* gnu/packages/telegram.scm (webrtc-for-telegram-desktop): Ditto.
* gnu/packages/video.scm (obs): Ditto.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2023-01-08 17:46:49 +01:00
Liliana Marie Prikler
e55bc944a9
gnu: Add python-commonroad-route-planner. 
* gnu/packages/simulation.scm (python-commonroad-route-planner): New variable.
 2023-01-08 16:29:56 +01:00
Liliana Marie Prikler
86136b4f76
gnu: Add python-commonroad-io. 
* gnu/packages/simulation.scm (python-commonroad-io): New variable.
 2023-01-08 16:29:56 +01:00
Liliana Marie Prikler
59a8de6bad
gnu: Add python-commonroad-vehicle-models. 
* gnu/packages/simulation.scm (%commonroad-dont-install-license-at-root)
(python-commonroad-vehicle-models): New variables.
 2023-01-08 16:27:59 +01:00
Liliana Marie Prikler
583a197b00
gnu: python-iso3166: Update to 2.1.1. 
* gnu/packages/iso-codes.scm (python-iso3166): Update to 2.1.1.
 2023-01-08 16:27:59 +01:00
Liliana Marie Prikler
ad6d10ac85
gnu: Add python-omegaconf. 
* gnu/packages/python-xyz.scm (python-omegaconf): New variable.
 2023-01-08 16:27:59 +01:00
Liliana Marie Prikler
74e5275167
gnu: Add java-antlr4-runtime-python. 
* gnu/packages/java.scm (java-antlr4-runtime-python): New variable.
 2023-01-08 16:27:58 +01:00
Tomasz Jeneralczyk
f5ea392b9c
gnu: Add vkmark. 
* gnu/packages/benchmark.scm (vkmark): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-08 16:11:46 +01:00