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Author SHA1 Message Date
Danny Milosavljevic
4fc4e5fdd9
gnu: gnome: Remove gnome-initial-setup. 
Fixes <https://bugs.gnu.org/39281>
Reported by Jack Hill <jackhill@jackhill.us>.

* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Remove
gnome-initial-setup.
 2020-01-27 21:26:10 +01:00
Ricardo Wurmus
94600c3960
gnu: r-gviz: Update to 1.30.1. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.1.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus
c7b98a84d9
gnu: r-genomicfeatures: Update to 1.38.1. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.1.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus
caf4290bd8
gnu: r-s4vectors: Update to 0.24.3. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.3.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus
0dfaebfa2e
gnu: r-multiassayexperiment: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.2.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus
c5d75df366
gnu: r-ropls: Update to 1.18.8. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.8.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus
062cbc4f2b
gnu: r-destiny: Update to 3.0.1. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.1.
 2020-01-27 20:48:36 +01:00
Mark H Weaver
678f651e8d
gnu: linux-libre@4.19: Update to 4.19.99. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.99.
(linux-libre-4.19-pristine-source): Update hash.
 2020-01-27 14:38:13 -05:00
Mark H Weaver
3c6332128a
gnu: linux-libre@4.14: Update to 4.14.168. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.168.
(linux-libre-4.14-pristine-source): Update hash.
 2020-01-27 14:37:16 -05:00
Pierre Neidhardt
11f46dc9de
gnu: emacs-gif-screencast: Update to 1.1. 
* gnu/packages/emacs-xyz.scm (emacs-gif-screencast): Update to 1.1.
 2020-01-27 20:28:55 +01:00
Amin Bandali
fcb510c541
gnu: light: Install udev rules to allow sudo-less invocations. 
* gnu/packages/linux.scm (light)[arguments]: Substitute the absolute paths
of chgrp and chmod in 90-backlight.rules and install the rules file to the
special lib/udev/rules.d/ directory of the out output.  This allows for
any member of the video group to set brightness using light without sudo.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-27 19:58:21 +02:00
Efraim Flashner
61b95c15cf
build: cargo-build-system: Add pkg-config environment variables. 
* guix/build/cargo-build-system.scm (configure): Add environment
variables to use system libgit2 and libssh2.
* gnu/packages/crates-io.scm (rust-libgit2-sys-0.10,
rust-libssh2-sys-0.2)[arguments]: Remove LIBGIT2 and LIBSSH2 environment
variable settings.
* gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
 2020-01-27 18:39:10 +02:00
Efraim Flashner
d0c4d1abfe
gnu: rust-pcre2-sys-0.2: Delete vendored code. 
* gnu/packages/crates-io.scm (rust-pcre2-sys-0.2)[source]: Delete
vendored code.
[arguments]: Remove custom phase.
(rust-pcre2-0.2, rust-grep-pcre2-0.1)[arguments]: Enable build.
[native-inputs]: Add pkg-config, pcre2.
 2020-01-27 18:36:12 +02:00
Efraim Flashner
d6dde77d7f
gnu: rust-libz-sys-1.0: Remove vendored code. 
* gnu/packages/crates-io.scm (rust-libz-sys-1.0)[source]: Remove
vendored code.
[arguments]: Remove custom phase.
(rust-libgit2-sys-0.10)[arguments]: Don't unvendor missing code.
(rust-libssh2-sys-0.2)[arguments]: Same.
* gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
 2020-01-27 18:36:12 +02:00
Efraim Flashner
bba73d473a
gnu: rust-lzma-sys-0.1: Remove vendored code. 
* gnu/packages/crates-io.scm (rust-lzma-sys-0.1)[source]: Remove
vendored code.
[arguments]: Remove custom phase.
 2020-01-27 18:36:12 +02:00
Efraim Flashner
ad03f50fa8
gnu: rust-libssh2-sys-0.2: Remove vendored code. 
* gnu/packages/crates-io.scm (rust-libssh2-sys-0.2)[source]: Remove
vendored code.
[arguments]: Don't remove missing vendored code.
(rust-libgit2-sys-0.10)[arguments]: Same.
* gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
 2020-01-27 18:36:11 +02:00
Efraim Flashner
e2302953d5
gnu: rust-jemalloc-sys-0.3: Remove vendored code. 
* gnu/packages/crates-io.scm (rust-jemalloc-sys-0.3)[source]: Remove
vendored code.
[arguments]: Don't remove missing vendored code.
 2020-01-27 18:36:11 +02:00
Efraim Flashner
0173e69f52
gnu: rust-libgit2-sys-0.10: Remove vendored code. 
* gnu/packages/crates-io.scm (rust-libgit2-sys-0.10)[source]: Remove
vendored code.
[arguments]: Don't remove missing vendored code.
* gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
 2020-01-27 18:36:11 +02:00
Efraim Flashner
a13db7e2ab
build: cargo-build-system: Allow patched crates. 
* guix/build/cargo-build-system.scm (crate-src?): Don't check for a
gzipped tarball, just make sure it's not a directory.
 2020-01-27 18:36:11 +02:00
Ricardo Wurmus
2afae7fc9a
gnu: r-fpc: Update to 2.2-4. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-4.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
2c676da719
gnu: r-rrcov: Update to 1.5-2. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.5-2.
[propagated-inputs]: Remove r-cluster.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
1003fd5142
gnu: r-tidyr: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.0.2.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
68146b9605
gnu: r-rngtools: Update to 1.5. 
* gnu/packages/statistics.scm (r-rngtools): Update to 1.5.
[propagated-inputs]: Remove r-pkgmaker and r-stringr.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
0d3d193476
gnu: r-pkgmaker: Update to 0.31. 
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.
[propagated-inputs]: Add r-assertthat.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
b4a374ec99
gnu: r-xml: Update to 3.99-0.3. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.3.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
1cc17e37ae
gnu: r-blob: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-blob): Update to 1.2.1.
[propagated-inputs]: Remove r-prettyunits.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
af837b9964
gnu: r-rmarkdown: Update to 2.1. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.1.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
8d9e85221f
gnu: r-catools: Update to 1.18.0. 
* gnu/packages/statistics.scm (r-catools): Update to 1.18.0.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
564c3330ed
gnu: r-rcpparmadillo: Update to 0.9.800.4.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.800.4.0.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
c6d1b5dafb
gnu: r-rlang: Update to 0.4.3. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.3.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
545ebafe83
gnu: r-knitr: Update to 1.27. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.27.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
6748b6b458
gnu: r-foreign: Update to 0.8-75. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-75.
 2020-01-27 16:33:30 +01:00
Ricardo Wurmus
7dd0af28f7
gnu: r-shinycssloaders: Update to 0.3. 
* gnu/packages/cran.scm (r-shinycssloaders): Update to 0.3.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
ba6d9fdcf3
gnu: r-idpmisc: Update to 1.1.20. 
* gnu/packages/cran.scm (r-idpmisc): Update to 1.1.20.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
05e2ed8b4f
gnu: r-rngwell: Update to 0.10-6. 
* gnu/packages/cran.scm (r-rngwell): Update to 0.10-6.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
328b5dde4b
gnu: r-bio3d: Update to 2.4-1. 
* gnu/packages/cran.scm (r-bio3d): Update to 2.4-1.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
5cda9ff27a
gnu: r-parameters: Update to 0.4.1. 
* gnu/packages/cran.scm (r-parameters): Update to 0.4.1.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
394fb5f38e
gnu: r-leiden: Update to 0.3.2. 
* gnu/packages/cran.scm (r-leiden): Update to 0.3.2.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
725086177a
gnu: r-rhpcblasctl: Update to 0.20-17. 
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-17.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
d3f58abbec
gnu: r-threejs: Update to 0.3.3. 
* gnu/packages/cran.scm (r-threejs): Update to 0.3.3.
[native-inputs]: Use jquery 1.12.4 and threejs version r111.
[arguments]: Adjust.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
93e63562fb
gnu: r-farver: Update to 2.0.3. 
* gnu/packages/cran.scm (r-farver): Update to 2.0.3.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
105639ce33
gnu: r-adegenet: Update to 2.1.2. 
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.2.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
107c14ba84
gnu: r-cobs: Update to 1.3-4. 
* gnu/packages/cran.scm (r-cobs): Update to 1.3-4.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
88bdfd704b
gnu: r-dorng: Update to 1.8.2. 
* gnu/packages/cran.scm (r-dorng): Update to 1.8.2.
[propagated-inputs]: Remove r-pkgmaker.
 2020-01-27 16:33:29 +01:00
Ricardo Wurmus
9073c464e5
gnu: r-future: Update to 1.16.0. 
* gnu/packages/cran.scm (r-future): Update to 1.16.0.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
6c6d051322
gnu: r-rmpfr: Update to 0.8-1. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-1.
[inputs]: Add gmp.
[native-inputs]: Add pkg-config.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
6378827a71
gnu: r-gmp: Update to 0.5-13.6. 
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.6.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
e99caf8a4c
gnu: r-afex: Update to 0.26-0. 
* gnu/packages/cran.scm (r-afex): Update to 0.26-0.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
5b959414e0
gnu: r-gh: Update to 1.1.0. 
* gnu/packages/cran.scm (r-gh): Update to 1.1.0.
[propagated-inputs]: Add r-cli.
 2020-01-27 16:33:28 +01:00
Ricardo Wurmus
4a7e857617
gnu: r-sjplot: Update to 2.8.2. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.2.
[propagated-inputs]: Remove r-ggrepel, r-glmmtmb, r-lme4, r-magrittr,
r-modelr, and r-psych.
 2020-01-27 16:33:28 +01:00