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192 commits

Author SHA1 Message Date
Ricardo Wurmus
0dde623211 gnu: Add python2-pysnptools. 
* gnu/packages/python.scm (python2-pysnptools): New variable.
 2015-06-26 15:29:01 +02:00
Ricardo Wurmus
19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Ricardo Wurmus
be0a4c261e gnu: python-scikit-learn: Update to 0.16.1. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.16.1.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
2f6b3d2e7e gnu: python-scikit-learn: Use OpenBLAS instead of ATLAS. 
* gnu/packages/python.scm (python-scikit-learn)[inputs]: Replace "atlas" with
  "openblas".
* gnu/packages/python.scm (python-scikit-learn)[arguments]: Remove build phase
  'set-environment-variables, which is only needed when ATLAS is used.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
719b01c157 gnu: python-scipy: Build with OpenBLAS and lapack. 
* gnu/packages/python.scm (python-scipy)[inputs]: Remove "atlas", add "lapack"
  and "openblas".
* gnu/packages/python.scm (python-scipy)[arguments]: Replace phase
  "set-environment-variables" with "configure-openblas".
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
cba256f8fa gnu: python-numpy-bootstrap: Add lapack to inputs. 
* gnu/packages/python.scm (python-numpy-bootstrap)[inputs]: Add lapack to
  inputs, because OpenBLAS does not include lapack functions.
 2015-06-15 10:36:41 +02:00
Mark H Weaver
4c50e5ab3a gnu: python: Disable ssl test that fails with openssl-1.0.2b. 
* gnu/packages/patches/python-disable-ssl-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python): Add patch.
 2015-06-13 23:01:07 -04:00
Ricardo Wurmus
dbdfe51598 gnu: python-numpy: Build against OpenBLAS. 
* gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of
  "atlas".
* gnu/packages/python.scm (python-numpy)[arguments]: Configure build against
  OpenBLAS.

Modified-By: Mark H Weaver <mhw@netris.org>
 2015-06-07 17:30:40 -04:00
宋文武
5ff408d998 python-pillow: Update to 2.8.1, remove duplicated ones. 
* gnu/packages/python.scm (python-pillow): Update to 2.8.1.
  [inputs]: Add freetype and libwebp.
  (python-pillow, python2-pillow): Remove duplicated variables.
 2015-05-29 21:01:42 +08:00
Andreas Enge
2e88d113aa gnu: dbus-glib: Propagate inputs dbus and glib. 
* gnu/packages/glib.scm (dbus-glib): Propagate inputs dbus and glib.
* gnu/packages/audio.scm (patchage),
  gnu/packages/gnuzilla.scm (icecat),
  gnu/packages/python.scm (python-dbus): Drop inputs dbus and glib.
* gnu/packages/gnome.scm (colord, gconf, gnome-vfs, upower),
  gnu/packages/mail.scm (claws-mail),
  gnu/packages/messaging.scm (hexchat),
  gnu/packages/wicd.scm (wicd): Drop input dbus.
 2015-05-23 17:12:00 +02:00
Ricardo Wurmus
748cef5be9 gnu: Add python-rq. 
* gnu/packages/python.scm (python-rq, python2-rq): New variables.
 2015-05-22 15:23:23 +02:00
Ricardo Wurmus
5394a6a653 gnu: Add python-redis. 
* gnu/packages/python.scm (python-redis, python2-redis): New variables.
 2015-05-22 15:23:23 +02:00
Ricardo Wurmus
12c270ddd4 gnu: Add python-click. 
* gnu/packages/python.scm (python-click, python2-click): New variables.
 2015-05-22 15:23:23 +02:00
Ricardo Wurmus
4520354282 gnu: Add python-pyzmq. 
* gnu/packages/python.scm (python-pyzmq, python2-pyzmq): New variables.
 2015-05-22 11:03:00 +02:00
Ricardo Wurmus
35de1fbd90 gnu: Add python-seaborn. 
* gnu/packages/python.scm (python-seaborn, python2-seaborn): New variables.
 2015-05-15 16:33:45 +02:00
Ricardo Wurmus
d072efcb6d gnu: Add python-pandas. 
* gnu/packages/python.scm (python-pandas, python2-pandas): New variables.
 2015-05-15 16:33:45 +02:00
Ricardo Wurmus
12f8f9bb3e gnu: Add python-scikit-image. 
* gnu/packages/python.scm (python-scikit-image, python2-scikit-image): New
  variables.
 2015-05-15 16:33:45 +02:00
Mark H Weaver
a3f61425a6 gnu: scons: Update to 2.3.4. 
* gnu/packages/python.scm (scons): Update to 2.3.4.
 2015-05-07 05:06:26 -04:00
Ricardo Wurmus
90fc547fa0 gnu: Add python-sympy. 
* gnu/packages/python.scm (python-sympy, python2-sympy): New variables.
 2015-05-04 15:21:47 +02:00
Ricardo Wurmus
310d218f64 gnu: Add python-tornado. 
* gnu/packages/python.scm (python-tornado, python2-tornado): New variables.
 2015-04-28 17:01:01 +02:00
Ricardo Wurmus
ed377cc6cf gnu: Add python2-backport-ssl-match-hostname. 
* gnu/packages/python.scm (python2-backport-ssl-match-hostname): New variable.
 2015-04-28 17:01:01 +02:00
宋文武
feaae48499 gnu: Add python-waf. 
* gnu/packages/python.scm (python-waf, python2-waf): New variables.
 2015-04-22 09:53:24 +08:00
宋文武
0e05d01e4f gnu: python: Use 'version-major+minor' to compute PYTHONPATH. 
Fixes a regression introduced in 08c0450.

* gnu/packages/python.scm (python)[native-search-paths]: Use
  'version-major+minor' to compute PYTHONPATH.
 2015-04-14 15:11:51 +08:00
Cyril Roelandt
08c045091e python: Update to 3.4.3 
* gnu/packages/python.scm (python): Update from 3.3.5 to 3.4.3.
* gnu/packages/patches/python-fix-tests.patch: Update the required test fixes.
* gnu/packages/patches/python-libffi-mips-n32-fix.patch: Remove it...
* gnu-system.am (dist_patch_DATA): ... and do not reference it here.
 2015-04-10 00:19:46 +02:00
Ricardo Wurmus
2c0499ad87 gnu: Add python-drmaa. 
* gnu/packages/python.scm (python-drmaa, python2-drmaa): New variables.
 2015-04-07 10:51:21 +02:00
David Thompson
0234ca06ce gnu: Add python-singledispatch. 
* gnu/packages/python.scm (python-singledispatch, python2-singledispatch): New
  variables.
 2015-04-05 12:42:36 -04:00
David Thompson
ae64112828 gnu: python-requests: Fix Python 2 version and add support for Python 3. 
* gnu/packages/python.scm (python-requests): New variable.
  (python2-requests): Generate based on Python 3 variant.
 2015-04-05 12:38:48 -04:00
Ricardo Wurmus
32f77c0445 gnu: Add python-networkx. 
* gnu/packages/python.scm (python-networkx, python2-networkx): New variables.
 2015-03-31 20:00:21 +02:00
Ricardo Wurmus
3cff95cbee gnu: Add python-decorator. 
* gnu/packages/python.scm (python-decorator, python2-decorator): New
  variables.
 2015-03-31 20:00:00 +02:00
Mark H Weaver
1f43445745 gnu: python: Do not use patchelf. 
* gnu/packages/python.scm (python-2): Add rpath for lib directory of output to
  LDFLAGS.  Remove 'patchelf' from inputs.  Remove #:modules and
  #:imported-modules from arguments.  Remove 'add-lib-to-runpath' phase.
  (python): Do not add #:modules to inherited package arguments.
 2015-03-24 19:30:33 -04:00
Ricardo Wurmus
ef5cbf9bae gnu: Add python-h5py and python2-h5py. 
* gnu/packages/python.scm (python-h5py, python2-h5py): New variables.
 2015-03-23 10:56:13 +01:00
Ludovic Courtès
db62afa55a gnu: Add python2-xlib. 
* gnu/packages/python.scm (python2-xlib): New variable.
 2015-03-17 13:49:18 +01:00
Ludovic Courtès
166191b377 gnu: Update packages to use 'non-copyleft' instead of 'bsd-style'. 
* gnu/packages/avr.scm, gnu/packages/compression.scm,
  gnu/packages/curl.scm, gnu/packages/cyrus-sasl.scm,
  gnu/packages/databases.scm, gnu/packages/firmware.scm,
  gnu/packages/flex.scm, gnu/packages/fontutils.scm,
  gnu/packages/gd.scm, gnu/packages/ghostscript.scm,
  gnu/packages/gnunet.scm, gnu/packages/graphics.scm,
  gnu/packages/hugs.scm, gnu/packages/image.scm,
  gnu/packages/linux.scm, gnu/packages/mail.scm,
  gnu/packages/maths.scm, gnu/packages/mit-krb5.scm,
  gnu/packages/python.scm, gnu/packages/rdf.scm,
  gnu/packages/ssh.scm, gnu/packages/tcl.scm,
  gnu/packages/xdisorg.scm, gnu/packages/xiph.scm,
  gnu/packages/yasm.scm, gnu/packages/zip.scm: Use 'non-copyleft'
  instead of 'bsd-style'.
 2015-03-14 19:27:14 +01:00
Mark H Weaver
1cb9c00614 gnu: python-testlib: Fix license field. 
Fixes a problem introduced in a1920bc9f2.
Debugged by David Thompson.

* gnu/packages/python.scm (python-testlib)[license]: 'expat' ->
  'license:expat'.
 2015-03-07 13:58:50 -05:00
Federico Beffa
a1920bc9f2 gnu: Add python-testlib and python2-testlib. 
* gnu/packages/python.scm (python-testlib, python2-testlib): New variables.
 2015-03-07 15:08:36 +01:00
Andreas Enge
516277cb14 gnu: python2-pil: Adapt to newer Freetype. 
* gnu/packages/python.scm (python2-pil): Add snippet.
 2015-03-07 00:56:43 +01:00
Ludovic Courtès
ce0614ddb0 gnu: Move 'which' to (gnu packages base). 
* gnu/packages/which.scm: Remove.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/base.scm (which): New variable.
* gnu/packages/aspell.scm, gnu/packages/audio.scm,
  gnu/packages/autogen.scm, gnu/packages/cdrom.scm,
  gnu/packages/compression.scm, gnu/packages/datamash.scm,
  gnu/packages/games.scm, gnu/packages/glib.scm,
  gnu/packages/gnu-pw-mgr.scm, gnu/packages/gnutls.scm,
  gnu/packages/gps.scm, gnu/packages/guile.scm,
  gnu/packages/java.scm, gnu/packages/libevent.scm,
  gnu/packages/linux.scm, gnu/packages/lisp.scm,
  gnu/packages/node.scm, gnu/packages/ntp.scm,
  gnu/packages/orpheus.scm, gnu/packages/pciutils.scm,
  gnu/packages/python.scm, gnu/packages/qt.scm,
  gnu/packages/rsync.scm, gnu/packages/sawfish.scm,
  gnu/packages/scheme.scm, gnu/packages/ssh.scm,
  gnu/packages/statistics.scm, gnu/packages/texlive.scm,
  gnu/packages/wdiff.scm: Adjust accordingly.
 2015-03-04 17:23:27 +01:00
Ludovic Courtès
1289062522 Merge branch 'core-updates'. 2015-03-04 14:07:23 +01:00
Ricardo Wurmus
92cb152b37 gnu: Add snakemake. 
* gnu/packages/python.scm (snakemake): New variable.
 2015-03-03 10:22:23 +01:00
Ricardo Wurmus
240ca4aae7 gnu: Add Scikit-learn. 
* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): New
  variables.
 2015-03-02 14:09:10 +01:00
Ricardo Wurmus
8d12be1eb1 gnu: Add pyyaml. 
* gnu/packages/python.scm (python-pyyaml, python2-pyyaml): New variables.
 2015-03-02 11:31:14 +01:00
Mark H Weaver
3820d39739 Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/gnupg.scm
 2015-03-01 19:05:29 -05:00
Mark H Weaver
f586c87705 gnu: Add 'file-name' fields for github source tarballs without a name. 
* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
  gnu/packages/audio.scm (jack-2, lvtk),
  gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
  gnu/packages/game-development.scm (tiled),
  gnu/packages/games.scm (minetest-data, minetest, retroarch),
  gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
  gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
  gnu/packages/mail.scm (offlineimap, libetpan),
  gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
  gnu/packages/nutrition.scm (gourmet),
  gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
  gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
  'file-name' field to origin.
 2015-02-28 09:49:01 -05:00
Andreas Enge
88c268347b gnu: python: Drop special handling of python2-numpydoc as input. 
* gnu/packages/python.scm (python2-numpy, python2-matplotlib,
  python2-ipython): Keep input python2-numpydoc created by
  package-with-python2.
 2015-02-28 01:17:57 +01:00
Andreas Enge
5e4d8f6710 gnu: python-numpydoc: Drop one test. 
* gnu/packages/python.scm (python-numpydoc): Drop one test for all Python
  versions.
  (python2-numpydoc): Define it by package-with-python2 without modifications.
 2015-02-28 01:08:37 +01:00
Andreas Enge
7ca0dbc3f0 gnu: python2-py2cairo: Rename to python2-pycairo. 
* gnu/packages/gtk.scm (python2-py2cairo): Rename to ...
  (python2-pycairo): ... this
  (python2-pygtk): Adapt input.
* gnu/packages/glib.scm (python2-pygobject-2): Adapt input.
* gnu/packages/python.scm (package-with-python2): Adapt input.
 2015-02-27 23:53:57 +01:00
Ludovic Courtès
7184b4b1bd gnu: Remove now unneeded 'localedef' invocations. 
This is a followup to commit b0fd2bd.

* gnu/packages/gawk.scm (gawk)[arguments] <install-locales>: Add comment
  on why we leave this here.
* gnu/packages/guile.scm (guile-ncurses)[arguments]: Remove
  'install-locales' phase.
* gnu/packages/swig.scm (swig)[arguments]: Likewise.
* gnu/packages/python.scm (python-matplotlib): Remove 'LOCPATH' setting
  and 'localedef' invocation.
  (python-scipy): Likewise.
 2015-02-27 15:08:37 +01:00
Ludovic Courtès
da6dd842d0 gnu: Remove now unneeded 'unpack' phases for unzip. 
This is a followup to commit cd0385b.

* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove 'unpack'
  phase.
* gnu/packages/image.scm (freeimage): Likewise.
* gnu/packages/python.scm (python2-cssutils): Likewise.
 2015-02-27 15:08:37 +01:00
Andreas Enge
3dd7547666 gnu: python-html5lib: Add propagated input. 
* gnu/packages/python.scm (python-html5lib): Add propagated input python-six.
  (python2-html5lib): Add propagated input python2-six.
 2015-02-25 00:58:20 +01:00
Andreas Enge
0c20025c05 gnu: Add python2-six. 
* gnu/packages/python.scm (python2-six): New variable.
 2015-02-25 00:58:20 +01:00