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Author SHA1 Message Date
Ricardo Wurmus
fa10f0d330
gnu: r-ks: Update to 1.11.5. 
* gnu/packages/cran.scm (r-ks): Update to 1.11.5.
 2019-05-28 23:55:14 +02:00
Ricardo Wurmus
1d7bde781f
gnu: r-bayesplot: Update to 1.7.0. 
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.0.
[propagated-inputs]: Add r-glue, r-tibble, and r-tidyselect.
 2019-05-28 23:54:53 +02:00
Ricardo Wurmus
27abdb11ae
gnu: r-refgenome: Update to 1.7.7. 
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.7.
 2019-05-28 23:54:46 +02:00
Ricardo Wurmus
794c9e7d96
gnu: r-snakecase: Update to 0.11.0. 
* gnu/packages/cran.scm (r-snakecase): Update to 0.11.0.
 2019-05-28 23:54:40 +02:00
Ricardo Wurmus
9dd351233b
gnu: r-openxlsx: Update to 4.1.0.1. 
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.1.
 2019-05-28 23:54:36 +02:00
Ricardo Wurmus
d328379d62
gnu: r-pillar: Update to 1.4.1. 
* gnu/packages/cran.scm (r-pillar): Update to 1.4.1.
 2019-05-28 23:54:32 +02:00
Ricardo Wurmus
130314d8fa
gnu: r-tsp: Update to 1.1-7. 
* gnu/packages/cran.scm (r-tsp): Update to 1.1-7.
 2019-05-28 23:54:26 +02:00
Ricardo Wurmus
6d3cfb88ea
gnu: r-jomo: Update to 2.6-8. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-8.
 2019-05-28 23:54:18 +02:00
Ricardo Wurmus
beb82eb9d0
gnu: r-ksamples: Update to 1.2-9. 
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-9.
 2019-05-28 23:54:12 +02:00
Ricardo Wurmus
6edf0fb3db
gnu: r-lpsolve: Update to 5.6.13.1. 
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.1.
 2019-05-28 23:54:07 +02:00
Ricardo Wurmus
14532452b8
gnu: r-car: Update to 3.0-3. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-3.
 2019-05-28 23:54:00 +02:00
Ricardo Wurmus
341643c6e1
gnu: r-fpc: Update to 2.2-1. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-1.
[propagated-inputs]: Remove r-trimcluster.
 2019-05-28 23:53:43 +02:00
Ricardo Wurmus
f95690ceae
gnu: r-prabclus: Update to 2.2-7.1. 
* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.1.
 2019-05-28 23:53:33 +02:00
Ricardo Wurmus
1498b5a2a4
gnu: r-zoo: Update to 1.8-6. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-6.
 2019-05-28 23:53:28 +02:00
Ricardo Wurmus
3fca3fa1bc
gnu: r-rmarkdown: Update to 1.13. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.13.
[propagated-inputs]: Add r-xfun.
 2019-05-28 23:53:15 +02:00
Ricardo Wurmus
923c6ac139
gnu: r-evaluate: Update to 0.14. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.14.
 2019-05-28 23:53:02 +02:00
Ricardo Wurmus
fa86654824
self: Fix unquoting. 
This is a follow-up to commit dfc69e4b6d.

* guix/self.scm (whole-package): Unquote %storedir in the daemon wrapper.
 2019-05-28 23:21:27 +02:00
h.nasajpour
67458e209d
gnu: python-attrs: Update to 19.1.0. 
* gnu/packages/python-xyz.scm (python-attrs): Update to 19.1.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-28 21:48:10 +02:00
h.nasajpour
205eb40e5b
gnu: python-flask: Update to 1.0.3. 
* gnu/packages/python-web.scm (python-flask): Update to 1.0.3.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-28 21:18:24 +02:00
Pierre Neidhardt
458e92215f
gnu: d-feet: Fix missing input and update to 0.3.14. 
* gnu/packages/gnome.scm (d-feet): Update to 0.3.14.
[inputs]: Add hicolor-icon-theme since d-feet won't list anything without it.
 2019-05-28 14:53:02 +02:00
Ludovic Courtès
e7f078c337
gnu: guix: Update to 35d1354. 
* gnu/packages/package-management.scm (guix): Update to 35d1354.
 2019-05-28 09:51:12 +02:00
Nicolas Goaziou
70fa77d881
gnu: emacs-relint: Update to 1.8. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.8.
 2019-05-27 23:22:34 +02:00
Nicolas Goaziou
d8d896c5b5
gnu: emacs-xr: Update to 1.12. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.12.
 2019-05-27 23:22:19 +02:00
Ludovic Courtès
35d1354fe8
publish: Display the compression method and level in use. 
* guix/scripts/publish.scm (guix-publish): Use 'info' instead of
'format' for the initial message.  When COMPRESSION is true, display the
method and level in use.
 2019-05-27 22:47:24 +02:00
Ludovic Courtès
c131bea276
lzlib: 'lzread!' never returns more than it was asked for. 
Fixes a bug whereby 'lzread!' could return more than COUNT.

* guix/lzlib.scm (lzread!): Rewrite in a semi-functional style.
 2019-05-27 22:47:24 +02:00
Ludovic Courtès
2e5c71b2a2
gnu: guix: Add dependency on lzlib. 
* gnu/packages/package-management.scm (guix)[inputs]: Add LZLIB.
 2019-05-27 22:47:24 +02:00
Ludovic Courtès
73ac9098b1
self: Add dependency on lzlib. 
* guix/self.scm (compiled-guix): Pass #:lzlib to 'make-config.scm'.
(make-config.scm): Add #:lzlib and honor it.
(specification->package): Add "lzlib".
 2019-05-27 22:47:24 +02:00
Ludovic Courtès
66229b04ae
publish: Add support for lzip. 
* guix/scripts/publish.scm (show-help, %options): Support '-C METHOD'
and '-C METHOD:LEVEL'.
(default-compression): New procedure.
(bake-narinfo+nar): Add lzip.
(nar-response-port): Likewise.
(string->compression-type): New procedure.
(make-request-handler): Generalize /nar/gzip handler to handle /nar/lzip
as well.
* tests/publish.scm ("/nar/lzip/*"): New test.
("/*.narinfo with lzip compression"): New test.
* doc/guix.texi (Invoking guix publish): Document it.
(Requirements): Mention lzlib.
 2019-05-27 22:47:24 +02:00
Ludovic Courtès
4e48923e75
utils: Support compression and decompression with lzip. 
* guix/utils.scm (lzip-port): New procedure.
(decompressed-port, compressed-port, compressed-output-port): Add 'lzip
case.
* tests/utils.scm <top level>: Call 'test-compression/decompression' for
'lzip as well.
 2019-05-27 22:47:24 +02:00
Ludovic Courtès
4c7ebe318f
utils: Test 'compressed-port' and 'decompressed-port' for both gzip and xz. 
* tests/utils.scm (test-compression/decompression): New procedure.
<top level>: Call it for both 'xz and 'gzip.
 2019-05-27 22:47:24 +02:00
Ludovic Courtès
2a991f3ae4
lzlib: Add 'make-lzip-input-port/compressed'. 
* guix/lzlib.scm (lzwrite!, make-lzip-input-port/compressed): New
procedures.
* tests/lzlib.scm ("make-lzip-input-port/compressed"): New test.
* guix/tests.scm (%seed): Export.
 2019-05-27 22:47:24 +02:00
Ludovic Courtès
e13354a7ca
lzlib: Adjust 'lz-compress-read' docstring. 
* guix/lzlib.scm (lz-compress-read): The integer return can be zero;
adjust docstring accordingly.
 2019-05-27 22:47:23 +02:00
Ricardo Wurmus
8916034a34
gnu: r-shiny: Fix JavaScript minification. 
Fixes <https://bugs.gnu.org/35923>.

* gnu/packages/cran.scm (r-shiny)[native-inputs]: Add uglify-js.
 2019-05-27 22:09:22 +02:00
Guillaume LE VAILLANT
ed72a133db
gnu: Add osmctools 
* gnu/packages/geo.scm (osmctools): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-05-27 14:32:13 -04:00
Alex Griffin
521d736ae9
gnu: go@1.4: Update to 1.4-bootstrap-20171003. 
* gnu/packages/golang.scm (go-1.4): Use the bootstrap branch that is
still supported upstream.
[version]: Update to 1.4-bootstrap-20171003.
[arguments]: Remove obsolete fix for timezone test which is now included
upstream.  Don't manually disable cgo because it is disabled by default.
Manually enable test suite because future releases will disable tests by
default.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-05-27 14:26:46 -04:00
Danny Milosavljevic
8d1647b228
gnu: python-alembic: Update to 1.0.10. 
* gnu/packages/databases.scm (python-alembic): Update to 1.0.10.
 2019-05-27 18:16:25 +02:00
Jakob L. Kreuze
f644f63655
doc: Update default value of terminal-outputs. 
* doc/guix.texi: (terminal-outputs) Update default value.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-27 16:44:53 +02:00
Stefan Stefanović
cf342a8598
gnu: tlp: Add required x86-energy-perf-policy input dependency. 
* gnu/packages/linux.scm (tlp)
[inputs]: Add system specific x86-energy-perf-policy dependency.
[arguments]<#:phases>['wrap]:
Adjust bin-directory procedure to return #f on missing input,
a guard against system specific input dependencies.
Filter only strings in the path list. Reformat for-each block.
Add x86-energy-perf-policy in bin-directory input-name list.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-27 16:41:12 +02:00
Stefan Stefanović
71bd55cb2a
gnu: Add x86-energy-perf-policy. 
* gnu/packages/linux.scm (x86-energy-perf-policy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-27 16:35:09 +02:00
guy fleury iteriteka
66fca5041b
gnu: MATE: Use mirror://mate/ in source URIs. 
* gnu/packages/mate.scm(MATE packages)[source](uri): Use "mirror://mate/"
  instead of "https://pub.mate-desktop.org/releases/" directly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-27 12:02:27 +02:00
Ludovic Courtès
ad7466aafd
import: hackage: Fix Cabal test. 
* guix/import/hackage.scm (hackage->guix-package): Remove call to 'memoize'.
(hackage->guix-package/m): New procedure.
(hackage-recursive-import): Use it.
* tests/hackage.scm ("hackage->guix-package test 6"): Adjust.

Co-authored-by: Robert Vollmert <rob@vllmrt.net>
 2019-05-26 23:20:30 +02:00
Robert Vollmert
002d17dcaa
discovery: 'all-modules' returns modules in path order. 
A particular effect of this is that if there are ambiguous
packages in a directory specified with `-L module_dir` and the
distribution, the version from `module_dir` will be loaded,
which is usually what would be expected. (E.g. for `guix build`
or `guix package -i`.)

* guix/discovery.scm (all-modules): Return modules in path order.
* tests/guix-package.sh: Test local definitions take precedence.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-26 23:02:02 +02:00
Ludovic Courtès
dfc69e4b6d
self: 'guix-daemon' honors %localstatedir, %sysconfdir, and %storedir. 
Fixes <https://bugs.gnu.org/35874>.
Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>.

Previously, the 'guix-daemon' program provided by 'guix pull' would
systematically use default directory locations for these.

* guix/self.scm (whole-package)[wrap]: Set GUIX_STATE_DIRECTORY,
GUIX_CONFIGURATION_DIRECTORY, and NIX_STORE_DIR.
 2019-05-26 22:01:42 +02:00
Alex Vong
45bdb66251
gnu: you-get: Update to 0.4.1302. 
* gnu/packages/video.scm (you-get): Update to 0.4.1302.
 2019-05-27 02:28:26 +08:00
Mark H Weaver
5ea87197f6
gnu: linux-libre: Update to 5.1.5. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.5.
(%linux-libre-hash): Update hash.
 2019-05-26 14:19:40 -04:00
Mark H Weaver
5b7be798b2
gnu: linux-libre@4.19: Update to 4.19.46. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.46.
(%linux-libre-4.19-hash): Update hash.
 2019-05-26 14:19:38 -04:00
Mark H Weaver
d87d375b64
gnu: linux-libre@4.14: Update to 4.14.122. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.122.
(%linux-libre-4.14-hash): Update hash.
 2019-05-26 14:19:35 -04:00
Mark H Weaver
5f3f63e5ad
gnu: linux-libre@4.9: Update to 4.9.179. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.179.
 2019-05-26 14:19:33 -04:00
Mark H Weaver
2bdce7a654
gnu: linux-libre: Rename a patch. 
* gnu/packages/linux.scm (%linux-libre-arm-export-__sync_icache_dcache-patch):
Remove the version from the file name, since it applies to multiple versions.
 2019-05-26 14:19:04 -04:00
Mark H Weaver
403b3a8c61
gnu: linux-libre-arm-generic: Move definition. 
* gnu/packages/linux.scm (linux-libre-arm-generic): Move the definition down,
next to the other linux-libre-arm-generic-* packages.
 2019-05-26 14:19:00 -04:00