Commit graph

68066 commits

Author SHA1 Message Date
Ricardo Wurmus
14a4c30828
gnu: r-universalmotif: Update to 1.8.4.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.4.
2021-04-08 13:28:24 +02:00
Ricardo Wurmus
8a7933f37e
gnu: r-rsubread: Update to 2.4.3.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.3.
2021-04-08 13:28:24 +02:00
Ricardo Wurmus
215b0ced02
gnu: r-chippeakanno: Update to 3.24.2.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.2.
[propagated-inputs]: Add r-dplyr.
2021-04-08 13:28:24 +02:00
Ricardo Wurmus
55185f9b3f
gnu: r-diffbind: Update to 3.0.15.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.15.
2021-04-08 13:28:24 +02:00
Ricardo Wurmus
9d2ca98213
gnu: r-genomeinfodb: Update to 1.26.6.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.6.
2021-04-08 13:28:24 +02:00
Ricardo Wurmus
fb73d7d10d
gnu: r-delayedarray: Update to 0.16.3.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.16.3.
2021-04-08 13:28:23 +02:00
Paul Garlick
71ca8fd40b
gnu: Add texlive-mweights.
* gnu/packages/tex.scm: New variable.
2021-04-08 11:18:06 +01:00
Morgan Smith
bb4f47a7f6
gnu: axoloti-runtime: Simplify build.
* gnu/packages/axoloti.scm (axoloti-runtime)[arguments]: Remove
unnecessary environment variable assignments in custom 'build phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-08 11:00:05 +03:00
Morgan Smith
5c9954490c
gnu: gcc-arm-none-eabi: Fix C++ header location.
Previously the C++ headers where installed in the include folder, overwriting
some C headers.

* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)
[native-search-paths]: Add C++ header locations.
(gcc-arm-none-eabi-7-2018-q2-update)[native-search-paths]: Add C++
header locations.
(make-libstdc++-arm-none-eabi)[arguments]: Change C++ header install
location to include/c++.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-08 10:58:54 +03:00
Ricardo Wurmus
e1a38cbad8
gnu: r-sn: Update to 2.0.0.
* gnu/packages/statistics.scm (r-sn): Update to 2.0.0.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
2e36f4a1c4
gnu: r-sfsmisc: Update to 1.1-10.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-10.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
9493b3e9a7
gnu: r-e1071: Update to 1.7-6.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-6.
[propagated-inputs]: Add r-proxy.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
d98cecdd07
gnu: r-xml: Update to 3.99-0.6.
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.6.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
d6fd6908c2
gnu: r-rsqlite: Update to 2.2.5.
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.5.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
e2851d10db
gnu: r-catools: Update to 1.18.2.
* gnu/packages/statistics.scm (r-catools): Update to 1.18.2.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
63c5888c43
gnu: r-dbplyr: Update to 2.1.1.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.1.1.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
55378aa21d
gnu: r-survival: Update to 3.2-10.
* gnu/packages/statistics.scm (r-survival): Update to 3.2-10.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
971a997f75
gnu: r-stars: Update to 0.5-2.
* gnu/packages/cran.scm (r-stars): Update to 0.5-2.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
0ec1b08a52
gnu: r-lwgeom: Update to 0.2-6.
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-6.
[inputs]: Add zlib.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
5a2602032f
gnu: r-ragg: Update to 1.1.2.
* gnu/packages/cran.scm (r-ragg): Update to 1.1.2.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
ded1599829
gnu: r-textshaping: Update to 0.3.3.
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.3.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
2224e02779
gnu: r-bbotk: Update to 0.3.2.
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.2.
2021-04-08 03:10:13 +02:00
Ricardo Wurmus
6ec08e19b3
gnu: r-mlr3learners: Update to 0.4.5.
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.4.5.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
ae3df456bb
gnu: r-mlr3misc: Update to 0.8.0.
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.8.0.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
b83b2a3a4b
gnu: r-phangorn: Update to 2.6.3.
* gnu/packages/cran.scm (r-phangorn): Update to 2.6.3.
[native-inputs]: Add r-knitr.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
6e93ab0666
gnu: r-qtl: Update to 1.48-1.
* gnu/packages/cran.scm (r-qtl): Update to 1.48-1.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
3ba3fb71fb
gnu: r-altmeta: Update to 3.3.
* gnu/packages/cran.scm (r-altmeta): Update to 3.3.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
ed5f5f0274
gnu: r-tidyposterior: Update to 0.1.0.
* gnu/packages/cran.scm (r-tidyposterior): Update to 0.1.0.
[propagated-inputs]: Remove r-lifecycle; add r-tune and r-workflowsets.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
7ac3cefc64
gnu: r-slider: Update to 0.2.1.
* gnu/packages/cran.scm (r-slider): Update to 0.2.1.
[propagated-inputs]: Add r-ellipsis.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
47d8e0c1ad
gnu: r-yardstick: Update to 0.0.8.
* gnu/packages/cran.scm (r-yardstick): Update to 0.0.8.
[propagated-inputs]: Add r-vctrs.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
f5c72b2cd7
gnu: r-muhaz: Update to 1.2.6.3.
* gnu/packages/cran.scm (r-muhaz): Update to 1.2.6.3.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
3974902362
gnu: r-cpp11: Update to 0.2.7.
* gnu/packages/cran.scm (r-cpp11): Update to 0.2.7.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
a387de2fa7
gnu: r-spatstat: Update to 2.1-0.
* gnu/packages/cran.scm (r-spatstat): Update to 2.1-0.
2021-04-08 03:10:12 +02:00
Ricardo Wurmus
3069514325
gnu: r-spatstat-linnet: Update to 2.1-1.
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.1-1.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
2ef03976f3
gnu: r-spatstat-core: Update to 2.0-0.
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.0-0.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
b6aa3ada62
gnu: r-spatstat-geom: Update to 2.0-1.
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.0-1.
[propagated-inputs]: Remove r-spatstat-sparse.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
8561ce6a8c
gnu: r-spatstat-data: Update to 2.1-0.
* gnu/packages/cran.scm (r-spatstat-data): Update to 2.1-0.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
1134bab6d0
gnu: r-spatstat-sparse: Update to 2.0-0.
* gnu/packages/cran.scm (r-spatstat-sparse): Update to 2.0-0.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
35654c7285
gnu: r-spatstat-utils: Update to 2.1-0.
* gnu/packages/cran.scm (r-spatstat-utils): Update to 2.1-0.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
213d7e7649
gnu: r-shapforxgboost: Update to 0.1.1.
* gnu/packages/cran.scm (r-shapforxgboost): Update to 0.1.1.
[propagated-inputs]: Remove r-lightgbm.
[native-inputs]: Add r-knitr.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
e138e27410
gnu: r-lightgbm: Update to 3.2.0.
* gnu/packages/cran.scm (r-lightgbm): Update to 3.2.0.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
13747f5814
gnu: r-latex2exp: Update to 0.5.0.
* gnu/packages/cran.scm (r-latex2exp): Update to 0.5.0.
[native-inputs]: Add r-knitr.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
3a849bf973
gnu: r-packrat: Update to 0.6.0.
* gnu/packages/cran.scm (r-packrat): Update to 0.6.0.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
13aca4c035
gnu: r-quanteda: Update to 3.0.0.
* gnu/packages/cran.scm (r-quanteda): Update to 3.0.0.
[propagated-inputs]: Remove r-data-table, r-digest, r-extrafont, r-ggplot2,
r-ggrepel, r-jsonlite, r-network, r-proxyc, and r-sna.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
f3785d8a1f
gnu: r-shapes: Update to 1.2.6.
* gnu/packages/cran.scm (r-shapes): Update to 1.2.6.
2021-04-08 03:10:11 +02:00
Ricardo Wurmus
83f2c14790
gnu: r-univoutl: Update to 0.3.
* gnu/packages/cran.scm (r-univoutl): Update to 0.3.
2021-04-08 03:10:10 +02:00
Ricardo Wurmus
b615567e4f
gnu: r-imager: Update to 0.42.8.
* gnu/packages/cran.scm (r-imager): Update to 0.42.8.
2021-04-08 03:10:10 +02:00
Ricardo Wurmus
c3ebc726cd
gnu: r-actuar: Update to 3.1-2.
* gnu/packages/cran.scm (r-actuar): Update to 3.1-2.
2021-04-08 03:10:10 +02:00
Ricardo Wurmus
ab5850c7d9
gnu: r-gamlss: Update to 5.3-4.
* gnu/packages/cran.scm (r-gamlss): Update to 5.3-4.
2021-04-08 03:10:10 +02:00
Ricardo Wurmus
bc65d86b94
gnu: r-gamlss-data: Update to 6.0-1.
* gnu/packages/cran.scm (r-gamlss-data): Update to 6.0-1.
2021-04-08 03:10:10 +02:00