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Author SHA1 Message Date
Oleg Pykhalov
c92590ca1d
gnu: Add emacs-jsonnet-mode. 
* gnu/packages/emacs-xyz.scm (emacs-jsonnet-mode): New variable.
 2021-01-21 06:12:09 +03:00
Leo Famulari
708d3ec0de
gnu: Mutt: Fix CVE-2021-3181. 
* gnu/packages/patches/mutt-CVE-2021-3181.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (mutt)[source]: Use it.
 2021-01-20 19:36:24 -05:00
Ludovic Courtès
d4a562ba7a
Revert "substitute: Remove extra 'newline' call." 
This reverts commit d5a1b0e86f.

This change turned out to be misguided; it would lead to "substitute:"
lines being printed on the client side, without anything beyond the
colon sign.
 2021-01-21 00:14:38 +01:00
Ludovic Courtès
98d3abe744
repl: Fix exception handling for interpreted code. 
The 'stack' variable could be #f when code is interpreted, which in
practice happens when running in "legacy" mode--i.e., when
'open-inferior' invokes "guile" instead of "guix repl".

* guix/repl.scm (send-repl-response)[handle-exception]: Check whether
STACK is true before passing it to 'stack->frames'.
* tests/inferior.scm ("&inferior-exception, legacy mode"): New test.
 2021-01-21 00:14:38 +01:00
Ludovic Courtès
074a201c33
inferior: Add 'inferior-eval-with-store' tests. 
* tests/inferior.scm ("inferior-eval-with-store, exception")
("inferior-eval-with-store, not a procedure"): New tests.
 2021-01-21 00:14:38 +01:00
Ludovic Courtès
3d43b7aef3
import, swh: Adjust to Guile-JSON 4.5.x unspecified value handling. 
* guix/import/cpan.scm (<cpan-release>)[home-page]: Add 'unspecified?'
case.
* guix/import/gem.scm (<gem>)[licenses]: Likewise.
(json->gem-dependency-list): Likewise.
* guix/swh.scm (<directory-entry>)[checksums]: Likewise.
 2021-01-21 00:14:38 +01:00
zimoun
41134f915f
gnu: libnode: Fix regression in unused phases. 
Fixes regression introduced with commit
1d77141f6d.

Reported by Pierre-Antoine Bouttier
<pierre-antoine.bouttier@univ-grenoble-alpes.fr>.

* gnu/packages/node.scm (libnode)[arguments]: Delete phase
"patch-node-shebang".

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-01-20 22:34:04 +01:00
Pierre Neidhardt
683154166d
gnu: lisp-repl-core-dumper: Patch path to `cat'. 
* gnu/packages/lisp.scm (lisp-repl-core-dumper)[arguments]: Substitute calls
to `cat' with full store path.
 2021-01-20 20:39:36 +01:00
Nicolas Goaziou
2ec30608b2
gnu: Add solarus-quest-editor. 
* gnu/packages/games.scm (solarus-quest-editor): New variable.
(solarus): Add a comment about linked updates.
 2021-01-20 19:14:31 +01:00
Tobias Geerinckx-Rice
166ccaefe8
archive: Note service type in ACL hint. 
* guix/scripts/archive.scm (authorize-key): Mention guix-service-type.
 2021-01-20 18:49:29 +01:00
Nicolas Goaziou
60f0ab5fce
gnu: solarus: Remove ".git" suffix from URL. 
* gnu/packages/games.scm (solarus)[source]: Remove ".git" suffix from URL.
 2021-01-20 18:39:03 +01:00
Nicolas Goaziou
f866d59115
gnu: Add solarus. 
* gnu/packages/games.scm (solarus): New variable.
 2021-01-20 18:37:09 +01:00
Ricardo Wurmus
ee3bae282b
gnu: r-fdrtool: Update to 1.2.16. 
* gnu/packages/statistics.scm (r-fdrtool): Update to 1.2.16.
 2021-01-20 17:19:10 +01:00
Ricardo Wurmus
d964fb5f98
gnu: r-pbkrtest: Update to 0.5-0.1. 
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.5-0.1.
[propagated-inputs]: Add r-broom, r-dplyr, and r-numderiv.
[native-inputs]: Add r-knitr.
 2021-01-20 17:19:10 +01:00
Ricardo Wurmus
0d04f1e2b2
gnu: r-quantreg: Update to 5.82. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.82.
 2021-01-20 17:19:10 +01:00
Ricardo Wurmus
1ebff06434
gnu: r-rcppeigen: Update to 0.3.3.9.1. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.9.1.
 2021-01-20 17:19:10 +01:00
Ricardo Wurmus
125c65d729
gnu: r-vgam: Update to 1.1-5. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-5.
 2021-01-20 17:19:10 +01:00
Ricardo Wurmus
4f8bfe296b
gnu: r-robustbase: Update to 0.93-7. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-7.
 2021-01-20 17:19:09 +01:00
Ricardo Wurmus
98794aef67
gnu: r-cowplot: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.1.
 2021-01-20 17:19:09 +01:00
Ricardo Wurmus
376f322988
gnu: r-sfsmisc: Update to 1.1-8. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-8.
 2021-01-20 17:19:09 +01:00
Ricardo Wurmus
04de103591
gnu: r-plotly: Update to 4.9.3. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.3.
[propagated-inputs]: Remove r-hexbin; add r-vctrs.
 2021-01-20 17:19:09 +01:00
Ricardo Wurmus
8bcffe0c46
gnu: r-hexbin: Update to 1.28.2. 
* gnu/packages/statistics.scm (r-hexbin): Update to 1.28.2.
 2021-01-20 17:19:09 +01:00
Ricardo Wurmus
ef921c3db7
gnu: r-glmnet: Update to 4.1. 
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1.
 2021-01-20 17:19:09 +01:00
Ricardo Wurmus
770cf0759c
gnu: r-dt: Update to 0.17. 
* gnu/packages/statistics.scm (r-dt): Update to 0.17.
 2021-01-20 17:19:09 +01:00
Ricardo Wurmus
27edbeadb8
gnu: r-segmented: Update to 1.3-1. 
* gnu/packages/statistics.scm (r-segmented): Update to 1.3-1.
 2021-01-20 17:19:09 +01:00
Ricardo Wurmus
a28aa533ba
gnu: r-rsqlite: Update to 2.2.2. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.2.
 2021-01-20 17:19:09 +01:00
Ricardo Wurmus
7a5adb9714
gnu: r-rmarkdown: Update to 2.6. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.6.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
b6958fdbfc
gnu: r-catools: Update to 1.18.1. 
* gnu/packages/statistics.scm (r-catools): Update to 1.18.1.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
0ae1c85266
gnu: r-rcpparmadillo: Update to 0.10.1.2.2. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.1.2.2.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
6dda661388
gnu: r-hms: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-hms): Update to 1.0.0.
[propagated-inputs]: Add r-ellipsis and r-lifecycle.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
1a1dfc99c8
gnu: r-withr: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.4.0.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
e25b88ab2e
gnu: r-git2r: Update to 0.28.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.28.0.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
bf3979cb10
gnu: r-backports: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-backports): Update to 1.2.1.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
89000790ae
gnu: r-data-table: Update to 1.13.6. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.13.6.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
3204b481f7
gnu: r-dplyr: Update to 1.0.3. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.3.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
d266d87f6a
gnu: r-tibble: Update to 3.0.5. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.5.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
521b7db252
gnu: r-rlang: Update to 0.4.10. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.10.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
cee5a27529
gnu: r-testthat: Update to 3.0.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.0.1.
 2021-01-20 17:19:08 +01:00
Ricardo Wurmus
a76d4f182a
gnu: r-bh: Update to 1.75.0-0. 
* gnu/packages/statistics.scm (r-bh): Update to 1.75.0-0.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
132c91c433
gnu: r-dbi: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.1.
[native-inputs]: Add r-knitr.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
aed08f62d9
gnu: r-gdtools: Update to 0.2.3. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.3.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
a7c27124eb
gnu: r-ggplot2: Update to 3.3.3. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.3.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
1e1edda31c
gnu: r-nlme: Update to 3.1-151. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-151.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
33184efac8
gnu: r-matrix: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.3-2.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
5f40f3edc8
gnu: r-mlr3misc: Update to 0.7.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.7.0.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
8eee252011
gnu: r-mlr3measures: Update to 0.3.1. 
* gnu/packages/cran.scm (r-mlr3measures): Update to 0.3.1.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
cf40cb0cc4
gnu: r-lgr: Update to 0.4.2. 
* gnu/packages/cran.scm (r-lgr): Update to 0.4.2.
[native-inputs]: Add r-knitr.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
958b735189
gnu: r-calculus: Update to 0.3.0. 
* gnu/packages/cran.scm (r-calculus): Update to 0.3.0.
[native-inputs]: Add r-knitr.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
6dacb2eee2
gnu: r-seurat: Update to 3.2.3. 
* gnu/packages/cran.scm (r-seurat): Update to 3.2.3.
[propagated-inputs]: Add r-scattermore.
 2021-01-20 17:19:07 +01:00
Ricardo Wurmus
a0f9ce93b9
gnu: r-qtl2: Update to 0.24. 
* gnu/packages/cran.scm (r-qtl2): Update to 0.24.
 2021-01-20 17:19:07 +01:00