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Author SHA1 Message Date
Roel Janssen
4c24186ae0
gnu: Add python-bitarray. 
* gnu/packages/python-xyz.scm (python-bitarray): New variable.
 2020-04-27 13:09:02 +02:00
Roel Janssen
06fc1a5142
gnu: Add r-cummerbund. 
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
 2020-04-27 11:46:08 +02:00
Roel Janssen
91370829f4
gnu: Add r-inum. 
* gnu/packages/cran.scm (r-inum): New variable.
 2020-04-27 11:15:38 +02:00
Roel Janssen
415176e89d
gnu: Add r-ggpmisc. 
* gnu/packages/cran.scm (r-ggpmisc): New variable.
 2020-04-27 11:05:49 +02:00
Roel Janssen
0c0ef9c5a6
gnu: Add r-coverageview. 
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
 2020-04-27 10:57:22 +02:00
Ricardo Wurmus
d4f86c8b66
gnu: Add peek. 
* gnu/packages/video.scm (peek): New variable.
 2020-04-27 10:46:12 +02:00
Ricardo Wurmus
c170a15996
gnu: emacs-org-reveal: Fix syntax error in description. 
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[description]: Fix Texinfo
syntax error.
 2020-04-27 10:45:51 +02:00
Ricardo Wurmus
320dd1195e
gnu: Add texlive-inconsolata. 
* gnu/packages/tex.scm (texlive-inconsolata): New variable.
 2020-04-27 10:45:51 +02:00
Roel Janssen
8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
 2020-04-27 10:43:51 +02:00
Roel Janssen
cb1ab0352b
gnu: Add r-karyoploter. 
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
 2020-04-27 10:37:42 +02:00
Roel Janssen
e658838c62
gnu: Add r-bezier. 
* gnu/packages/cran.scm (r-bezier): New variable.
 2020-04-27 10:28:50 +02:00
Roel Janssen
e8d435f7a2
gnu: Add r-ideoviz. 
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
 2020-04-27 10:24:20 +02:00
Roel Janssen
df6c7f0487
gnu: Add r-ecp. 
* gnu/packages/cran.scm (r-ecp): New variable.
 2020-04-27 10:18:48 +02:00
Roel Janssen
8521d93854
gnu: Add r-reordercluster. 
* gnu/packages/cran.scm (r-reordercluster): New variable.
 2020-04-27 10:11:21 +02:00
Maxim Cournoyer
9c63165d9e
gnu: liblinphone: Move documentation and tester to separate outputs. 
* gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester"
outputs.
[phases]: Add a separate-outputs phase.  Move the
glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
 2020-04-27 00:54:44 -04:00
Maxim Cournoyer
1ae4325734
gnu: liblinphone: Fix the input type of some dependencies. 
Libraries being linked to such as libxml2, libiconv and zlib should appear as
'inputs' rather than 'native-inputs'.

* gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv,
libxml2 and zlib to...
[inputs]: ...here.  Move eudev, python-pystache and python-six to
native-inputs.
 2020-04-27 00:54:30 -04:00
Maxim Cournoyer
8472c26c25
gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs. 
Icon themes and theme engines are best left for the users to select and
install themselves.

* gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme.
[propagated-inputs]: Remove murrine.
 2020-04-27 00:54:30 -04:00
Brice Waegeneire
3b177a6c33
gnu: Add loadable module to wireguard-linux-compat. 
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace
'gnu-build-system' by 'linux-module-build-system'.
[outputs]: Add 'kernel-patch'.
[arguments]: Adjust the build system. Add phases 'change-directory' and
'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to
'install-patch'.
[description]: Mention the loadable module.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-26 18:24:28 -04:00
Ludovic Courtès
ccbc427f9a
channels: Use a declarative profile. 
* guix/channels.scm (package-cache-file): Use 'profile' instead of
'profile-derivation'.
 2020-04-26 22:49:49 +02:00
Ludovic Courtès
0e5c2d5e14
services: system: Initial entries are non-monadic. 
* gnu/system.scm (operating-system-directory-base-entries): Return a
regular, non-monadic value.
* gnu/services.scm (system-derivation): Adjust accordingly.
* gnu/system/linux-container.scm (container-essential-services): Likewise.
 2020-04-26 22:49:49 +02:00
Ludovic Courtès
45c84c8f6f
pack: Use a declarative profile. 
* guix/scripts/pack.scm (guix-pack): Use a declarative profile instead
of 'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès
45bd91334f
services: profile: Use a declarative profile. 
* gnu/services.scm (packages->profile-entry): Use 'profile' instead of
'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès
cda751105e
system: 'operating-system-directory-base-entries' uses 'profile'. 
* gnu/system.scm (operating-system-directory-base-entries): Use a
declarative profile instead of 'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès
ef674a24c5
profiles: Add lowerable <profile> record type. 
* guix/profiles.scm (<profile>): New record type.
* tests/profiles.scm ("<profile>"): New test.
 2020-04-26 22:49:48 +02:00
Roel Janssen
1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description. 
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
 2020-04-26 21:47:19 +02:00
Roel Janssen
63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
 2020-04-26 21:34:49 +02:00
Maxim Cournoyer
b58a22e5b7
gnu: Add hackneyed-x11-cursors. 
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
 2020-04-26 15:32:10 -04:00
Roel Janssen
886125d791
gnu: Add r-motifbreakr. 
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
 2020-04-26 21:24:03 +02:00
Roel Janssen
3699bcf54a
gnu: Add r-motifdb. 
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
 2020-04-26 21:07:45 +02:00
Roel Janssen
ec20858a6a
gnu: Add r-pasilla. 
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
 2020-04-26 21:02:00 +02:00
Christopher Baines
f476238431
gnu: guile3.0-chickadee: Rename to guile3.0-chickadee. 
This avoids having to packages, both called guile-chickadee.

* gnu/packages/game-development.scm (guile3.0-chickadee)[name]: Change from
guile-chickadee to guile3.0-chickadee.
 2020-04-26 19:44:33 +01:00
Christopher Baines
53aa66c3df
reconfigure: Don't call build-derivations for upgrade-services test 
This commit adjusts the upgrade-services system test to not build anything
when computing the derivation for the system test.  I came across this when
looking at issues computing the system test derivations to store in the Guix
Data Service.

* gnu/tests/reconfigure.scm (run-upgrade-services-test): Remove the use of,
and definition for ensure-service-file.
 2020-04-26 19:41:56 +01:00
Christopher Baines
928dc1bb1c
substitute: Close port at the end of http-multiple-get. 
* guix/scripts/substitute.scm (http-multiple-get): Add close-port call.
 2020-04-26 19:37:25 +01:00
Christopher Baines
d5abb3049e
substitute: Make http-multiple-get batch size configurable. 
* guix/scripts/substitute.scm (http-multiple-get): Add batch-size parameter.
 2020-04-26 19:37:24 +01:00
Christopher Baines
121191f23a
substitute: Use the same port for multiple request batches. 
In http-multiple-get.

* guix/scripts/substitute.scm (http-multiple-get): Switch port to p in one
occurrence.
 2020-04-26 19:37:22 +01:00
Lars-Dominik Braun
910bf1f7a1
gnu: Add tarsplitter. 
* gnu/packages/compression.scm (tarsplitter): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 21:07:43 +03:00
Leo Famulari
ca4b55882a
gnu: Add rav1e. 
* gnu/packages/video.scm (rav1e): New variable.
* gnu/packages/rust-apps.scm (rust-cbindgen-0.12, rust-cargo-c): New
variables.
* gnu/packages/crates-io.scm: Various new packages and upgrades.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 19:57:46 +03:00
Efraim Flashner
ee8de73814
gnu: python-scanpy: Update to 1.4.6. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
 2020-04-26 15:03:50 +03:00
Marius Bakke
2b829898c7
gnu: python-publicsuffix2: Adjust for Guile 3.0. 
* gnu/packages/python-web.scm (python-publicsuffix2): Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
52bdd30407
gnu: nim: Adjust for Guile 3.0. 
* gnu/packages/nim.scm (nim)[arguments]: Provide explicit destination in calls
to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
05e3ed302f
gnu: tpacpi-bat: Adjust for Guile 3.0. 
* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Provide explicit destination
in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
30d0f7fa8f
gnu: nmoldyn: Adjust for Guile 3.0. 
* gnu/packages/chemistry.scm (nmoldyn)[arguments]: Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
02de4b1da1
gnu: calcurse: Adjust for Guile 3.0. 
* gnu/packages/calcurse.scm (calcurse)[arguments]: Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:15 +02:00
Marius Bakke
f989dffd2c
gnu: thinkfan: Adjust for Guile 3.0. 
* gnu/packages/linux.scm (thinkfan)[arguments]: Provide explicit destination
in calls to FORMAT (destination is no longer optional with Guile 3).
 2020-04-26 13:31:15 +02:00
Eric Brown
660611e5f6
gnu: Add sylpheed. 
* gnu/packages/mail.scm (sylpheed): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:47:19 +02:00
Raghav Gururajan
0745e28d66
gnu: Add xarchiver. 
* gnu/packages/compression (xarchiver): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:25:59 +02:00
Giacomo Leidi
0bf66cbb72
gnu: Add python-osc. 
* gnu/packages/python-xyz.scm (python-osc): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:15:09 +02:00
Evan Straw
bb85018ceb
gnu: hugin: Update to 2019.2.0. 
* gnu/packages/photo.scm (hugin): Update to 2019.2.0.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:14:49 +02:00
Arun Isaac
018114baa7
gnu: maradns: Fix cross compilation. 
* gnu/packages/dns.scm (maradns)[arguments]: Build make_32bit_tables for the
host.
 2020-04-26 15:14:46 +05:30
Marius Bakke
796b387bc2
vm: Remove unused import. 
* gnu/system/vm.scm: Do not import (gnu packages make-bootstrap).
 2020-04-26 11:27:06 +02:00