Commit graph

9541 commits

Author SHA1 Message Date
David Thompson
a907d9973a gnu: services: Fix typo in gpm-dmd-service.
* gnu/services/base.scm (gpm-dmd-service): s/dmd/gpm/
2015-11-20 09:56:41 -05:00
David Thompson
3307c7877e gnu: Add emulation-station.
* gnu/packages/games.scm (emulation-station): New variable.
2015-11-20 09:27:15 -05:00
Ricardo Wurmus
b49c5a58dc gnu: preseq: Update to 2.0.
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
  file.
* gnu-system.am (dist_patch_DATA): Remove them.
2015-11-20 15:22:06 +01:00
Ricardo Wurmus
c6a24d6e92 gnu: Add smithlab-cpp.
* gnu/packages/bioinformatics.scm (smithlab-cpp): New variable.
2015-11-20 15:22:06 +01:00
Ricardo Wurmus
3d51ec919e gnu: edirect: Update home page.
* gnu/packages/bioinformatics.scm (edirect)[home-page]: Append trailing
  slash to home page.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
c52a382c4a gnu: sra-tools: Update to 2.5.4.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.4.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
9e5ef614aa gnu: ncbi-vdb: Update to 2.5.4.
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
614a8977cb gnu: ngs-java: Update to 1.2.2.
* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2.
[arguments]: Remove build phase "fix-java-symlink-installation".
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
d6a1cd7cae gnu: ngs-sdk: Update to 1.2.2.
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.2.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
2c84ba7e11 gnu: Add ruby-net-ssh.
* gnu/packages/ruby.scm (ruby-net-ssh): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
4f2a52aeb5 gnu: Add ruby-mocha.
* gnu/packages/ruby.scm (ruby-mocha): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
d93062fd5c gnu: Add ruby-redcarpet.
* gnu/packages/ruby.scm (ruby-redcarpet): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
97aee8d3eb gnu: Add ruby-introspection.
* gnu/packages/ruby.scm (ruby-introspection): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
4016ba3fd0 gnu: Add ruby-instantiator.
* gnu/packages/ruby.scm (ruby-instantiator): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
21f7b7bd80 gnu: Add ruby-blankslate.
* gnu/packages/ruby.scm (ruby-blankslate): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
25d6d49b3e gnu: Add ruby-metaclass.
* gnu/packages/ruby.scm (ruby-metaclass): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
3383f5bdab gnu: Add ruby-test-unit.
* gnu/packages/ruby.scm (ruby-test-unit): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
cc5aeb8c7d gnu: Add ruby-packnga.
* gnu/packages/ruby.scm (ruby-packnga): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
c1f52261e2 gnu: Add ruby-gettext.
* gnu/packages/ruby.scm (ruby-gettext): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
e2333ea391 gnu: Add ruby-text.
* gnu/packages/ruby.scm (ruby-text): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
347eb21e1d gnu: Add ruby-locale.
* gnu/packages/ruby.scm (ruby-locale): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
f88bacaf6f gnu: Add ruby-power-assert.
* gnu/packages/ruby.scm (ruby-power-assert): New variable.
2015-11-20 15:21:24 +01:00
Ricardo Wurmus
9641a89957 gnu: bless: Build only for x86_64.
* gnu/packages/bioinformatics.scm (bless): Add supported-systems field.
2015-11-20 11:32:32 +01:00
Ricardo Wurmus
0536727efe gnu: htseq: Propagate numpy.
* gnu/packages/bioinformatics.scm (htseq)[inputs]: Move python2-numpy
  from here ...
[propagated-inputs]: ... to here.
2015-11-20 11:32:32 +01:00
Ricardo Wurmus
dffdef0f0f gnu: ant: Update to 1.9.6.
* gnu/packages/java.scm (ant): Update to 1.9.6.
2015-11-20 11:32:32 +01:00
Ludovic Courtès
b2a72238b9 gnu: guix: Update development snapshot to 5c36edc.
* gnu/packages/package-management.scm (guix-devel): Update to 5c36edc.
2015-11-19 22:33:01 +01:00
Ludovic Courtès
5c36edc818 doc: Mention fonts for Asian languages.
Suggested by Alex Vong <alexvong1995@gmail.com>.

* doc/guix.texi (Application Setup): Explain how to install X11 fonts
  for Asian languages.
2015-11-19 17:39:48 +01:00
Ludovic Courtès
28d939af0e doc: Update documentation of the 'services' field.
* doc/guix.texi (operating-system Reference): The 'services' field now
  contains a list of service objects.
2015-11-19 17:39:48 +01:00
Ricardo Wurmus
bc8bf605fc gnu: jack-2: Fix jack_control script.
* gnu/packages/audio.scm (jack-2)[inputs]: Add python2-dbus.
[arguments]: Use python-2 and add build phase to wrap jack_control
Python script.
2015-11-19 16:10:52 +01:00
Ricardo Wurmus
80e6f37e30 services: Add udev-rule procedure.
* gnu/services/base.scm (udev-rule): New procedure.
(kvm-udev-rule): Rewrite as variable in terms of udev-rule.
2015-11-19 16:10:52 +01:00
Eric Bavier
c3c61a781c gnu: ghc-unordered-containers: Enable tests.
* gnu/packages/haskell.scm (ghc-unordered-containers)
  [arguments]: Remove.
  [inputs]: Add ghc-chasingbottoms, ghc-test-framework,
  ghc-test-framework-hunit, and ghc-test-framework-quickcheck2.
2015-11-19 03:13:20 -06:00
Eric Bavier
4eca62be49 gnu: Add ghc-chasingbottoms.
* gnu/packages/haskell.scm (ghc-chasingbottoms): New variable.
2015-11-19 03:13:20 -06:00
Eric Bavier
19206f5eb8 gnu: ghc-attoparsec: Enable tests.
* gnu/packages/haskell.scm (ghc-attoparsec)[arguments]: Remove.
  [inputs]: Add ghc-quickcheck, ghc-quickcheck-unicode,
  ghc-test-framework, and ghc-test-framework-quickcheck2.
2015-11-19 03:13:19 -06:00
Eric Bavier
ab715ec9ae gnu: Add ghc-test-framework-quickcheck2.
* gnu/packages/haskell.scm (ghc-test-framework-quickcheck2): New
  variable.
2015-11-19 03:13:19 -06:00
Eric Bavier
e1c1b71c38 gnu: ghc-async: Enable tests.
* gnu/packages/haskell.scm (ghc-async)[arguments]: Remove.
  [inputs]: Add ghc-hunit, ghc-test-framework, and
  ghc-test-framework-hunit.
2015-11-19 03:13:19 -06:00
Eric Bavier
0eeaa169a0 gnu: ghc-regex-posix: Propagate inputs.
* gnu/packages/haskell.scm (ghc-regex-posix): Propagate ghc-regex-base
  input.
2015-11-19 03:13:19 -06:00
Eric Bavier
1fe25c573a gnu: Add ghc-test-framework-hunit.
* gnu/packages/haskell.scm (ghc-test-framework-hunit): New variable.
2015-11-19 03:13:19 -06:00
Eric Bavier
09655c676b gnu: Add ghc-test-framework.
* gnu/packages/haskell.scm (ghc-test-framework): New variable.
2015-11-19 03:13:19 -06:00
Eric Bavier
1472ba2546 gnu: Add ghc-libxml.
* gnu/packages/haskell.scm (ghc-libxml): New variable.
2015-11-19 03:13:19 -06:00
Eric Bavier
ccd7b30872 gnu: Add ghc-hostname.
* gnu/packages/haskell.scm (ghc-hostname): New variable.
2015-11-19 03:13:19 -06:00
Efraim Flashner
d2a5210844 gnu: tilda: Update to 1.3.0.
* gnu/packages/terminals.scm (tilda): Update to 1.3.0.
[inputs]: Switch vte from 0.36 to 0.40, remove zip.
2015-11-19 14:45:45 +02:00
Efraim Flashner
e30be98653 gnu: youtube-dl: Update to 2015.11.18.
* gnu/packages/video.scm (youtube-dl): Update to 2015.11.18.
2015-11-19 09:48:41 +02:00
Mark H Weaver
3470fe002c gnu: libsndfile: Add fixes for CVE-2014-9496 and CVE-2015-7805.
* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/pulseaudio.scm (libsndfile)[source]: Add patches.
2015-11-18 17:47:40 -05:00
Mark H Weaver
b4a88dc25f gnu: libxslt: Add fix for CVE-2015-7995.
* gnu/packages/patches/libxslt-CVE-2015-7995.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[source]: Add patch.
2015-11-18 17:47:40 -05:00
Mark H Weaver
ee6bb0cc76 gnu: libxml2: Add fixes for CVE-2015-{1819,7941,7942,8035} and other bugs.
* gnu/packages/patches/libxml2-CVE-2015-1819.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
  gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
  gnu/packages/patches/libxml2-CVE-2015-8035.patch,
  gnu/packages/patches/libxml2-bug-737840.patch,
  gnu/packages/patches/libxml2-bug-738805.patch,
  gnu/packages/patches/libxml2-bug-746048.patch,
  gnu/packages/patches/libxml2-bug-747437.patch,
  gnu/packages/patches/libxml2-bug-751603.patch,
  gnu/packages/patches/libxml2-bug-751631.patch,
  gnu/packages/patches/libxml2-bug-754946.patch,
  gnu/packages/patches/libxml2-bug-754947.patch,
  gnu/packages/patches/libxml2-bug-755857.patch,
  gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
  gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
  gnu/packages/patches/libxml2-node-sort-order-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[source]: Add patches.
2015-11-18 17:47:40 -05:00
Mark H Weaver
328a14e869 gnu: libpng: Update to 1.5.24 [fixes CVE-2015-8126].
* gnu/packages/image.scm (libpng): Update to 1.5.24.
2015-11-18 17:47:40 -05:00
Mark H Weaver
21ef9843e4 Revert "gnu: libpng: Use 1.5.24 as a replacement [fixes CVE-2015-8126]."
This reverts commit 1b076e630f.
2015-11-18 17:47:17 -05:00
Ricardo Wurmus
c797fabe79 services: Export udev-configuration procedures.
* gnu/services/base.scm (udev-configuration, udev-configuration?,
  udev-configuration-rules): Export.
2015-11-18 22:04:48 +01:00
Ludovic Courtès
7be4a4b0ae gnu: weechat: Fix patching of assignments to 'python2_bin'.
Fixes a regression introduced in a9346fa.

* gnu/packages/weechat.scm (weechat)[arguments]: Make sure PYTHON2_BIN
  can be freed with 'free'.
2015-11-18 18:01:50 +01:00
Ludovic Courtès
b567abcf1a gnu: weechat: Encode as UTF-8.
* gnu/packages/weechat.scm: Reencode as UTF-8.
2015-11-18 18:01:30 +01:00