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Author SHA1 Message Date
Efraim Flashner
8e344e3677
gnu: singularity: Update command substitutions. 
Reported by Hao Chen <hchen@uthsc.edu>.

* gnu/packages/linux.scm (singularity)[arguments]: Update
'patch-references phase to actually patch mksquashfs calls and to patch
sed calls.
 2020-12-10 14:22:57 +02:00
Christopher Baines
3fdb01f1f5
gnu: guile-prometheus: Update to 0-4.f661edf. 
* gnu/packages/guile-xyz.scm (guile-prometheus): Update to 0-4.f661edf.
 2020-12-10 09:28:25 +00:00
Mathieu Othacehe
0faef87178
avahi: Ignore local services. 
* guix/avahi.scm (avahi-browse-service-thread): Add "ignore-local?" argument
and honor it.
 2020-12-10 09:48:03 +01:00
Michael Rohleder
71dd1be597
gnu: emacs-lsp-ivy: Update to 0.4. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-ivy): Update to 0.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-12-10 08:31:00 +01:00
Michael Rohleder
38b05e7d30
gnu: emacs-company-emoji: Update to 2.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-company-emoji): Update to 2.6.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-12-10 08:29:37 +01:00
Morgan Smith
ef24052f88
gnu: Add emacs-org-pretty-table. 
* gnu/packages/emacs-xyz.scm (emacs-org-pretty-table): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-12-10 08:28:16 +01:00
Michael Rohleder
1781d35364
gnu: emacs-dash-docs: Update to 1.4.0-2.dafc8fc. 
* gnu/packages/emacs-xyz.scm (emacs-dash-docs): Update to 1.4.0-2.dafc8fc.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-12-10 08:25:27 +01:00
Nicolas Goaziou
11456ba8d7
gnu: emacs-chess: Update to 2.0.5. 
* gnu/packages/emacs-xyz.scm (emacs-chess): Update to 2.0.5.
 2020-12-10 08:23:33 +01:00
Leo Famulari
ec2eccbf3d
gnu: Remove python-llfuse-0.41. 
* gnu/packages/python-xyz.scm (python-llfuse-0.41): Remove variable.
 2020-12-09 18:18:26 -05:00
Leo Famulari
15c4e135a7
gnu: Remove Attic. 
This package was superseded by Borg in 2016, and hasn't built
successfully for a while.

* gnu/packages/backup.scm (attic): Remove variable.
 2020-12-09 18:18:22 -05:00
Ricardo Wurmus
48f77ecbb1
gnu: r-keggrest: Update to 1.30.1. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.30.1.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus
4745f0dfca
gnu: r-genomeinfodb: Update to 1.26.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.2.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus
baeaa02e75
gnu: r-biocstyle: Update to 2.18.1. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.1.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus
3872153a2f
gnu: r-scuttle: Update to 1.0.3. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.3.
[propagated-inputs]: Add r-genomicranges.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus
eed728951c
gnu: r-beachmat: Update to 2.6.2. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.2.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus
589ac42212
gnu: r-cicero: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.1.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus
7cda2d415f
gnu: r-biosigner: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.2.
 2020-12-09 23:30:12 +01:00
Ricardo Wurmus
4714787793
gnu: r-biocneighbors: Update to 1.8.2. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.2.
[propagated-inputs]: Remove r-rcppannoy.
 2020-12-09 23:30:12 +01:00
Giacomo Leidi
371ba7b4be
guix: Add globstar support. 
* guix/glob.scm (string->sglob)
(glob-match?): Add globstar support.
* tests/glob.scm: Update accordingly.

Signed-off-by: Jelle Licht <jlicht@fsfe.org>
 2020-12-09 22:25:17 +01:00
Ricardo Wurmus
52e14cb798
gnu: r-lubridate: Update to 1.7.9.2. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.9.2.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
d0c7b9f718
gnu: r-lme4: Update to 1.1-26. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-26.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
d6d2984869
gnu: r-fpc: Update to 2.2-9. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-9.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
61d24175b6
gnu: r-mclust: Update to 5.4.7. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.7.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
31a6a60576
gnu: r-gplots: Update to 3.1.1. 
* gnu/packages/statistics.scm (r-gplots): Update to 3.1.1.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
3ffc5515db
gnu: r-hmisc: Update to 4.4-2. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-2.
 2020-12-09 22:03:39 +01:00
Ricardo Wurmus
5d0ccf888f
gnu: r-rprojroot: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 2.0.2.
[propagated-inputs]: Remove r-backports.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
da290237fb
gnu: r-rcpparmadillo: Update to 0.10.1.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.1.2.0.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
48af6aa1cb
gnu: r-rstudioapi: Update to 0.13. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.13.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
e4ce58424e
gnu: r-backports: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-backports): Update to 1.2.0.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
aed99e0c7d
gnu: r-data-table: Update to 1.13.4. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.13.4.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
348c21eafc
gnu: r-dbplyr: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.0.0.
[propagated-inputs]: Add r-withr.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
0bc87a5282
gnu: r-rlang: Update to 0.4.9. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.9.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
ff34dbb542
gnu: r-testthat: Update to 3.0.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.0.0.
[propagated-inputs]: Add r-brio, r-callr, r-desc, r-jsonlite, r-lifecycle,
r-processx, r-ps, and r-waldo.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
59771643de
gnu: r-codetools: Update to 0.2-18. 
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-18.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
1f2ceaccf1
gnu: r-diversitree: Update to 0.9-15. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-15.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
48504a231a
gnu: r-tidymodels: Update to 0.1.2. 
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.2.
[propagated-inputs]: Remove r-crayon.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
29ebaf068e
gnu: r-tune: Update to 0.1.2. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.2.
[propagated-inputs]: Remove r-crayon and r-lifecycle; add r-generics.
 2020-12-09 22:03:38 +01:00
Ricardo Wurmus
94ebe64f19
gnu: r-cpp11: Update to 0.2.4. 
* gnu/packages/cran.scm (r-cpp11): Update to 0.2.4.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
80a279b118
gnu: r-spatstat-data: Update to 1.5-2. 
* gnu/packages/cran.scm (r-spatstat-data): Update to 1.5-2.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
aa486bbc2f
gnu: r-hardhat: Update to 0.1.5. 
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.5.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
f694850d38
gnu: r-brms: Update to 2.14.4. 
* gnu/packages/cran.scm (r-brms): Update to 2.14.4.
[propagated-inputs]: Add r-projpred.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
2847297e88
gnu: r-isoband: Update to 0.2.3. 
* gnu/packages/cran.scm (r-isoband): Update to 0.2.3.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
b19230386d
gnu: r-loo: Update to 2.4.0. 
* gnu/packages/cran.scm (r-loo): Update to 2.4.0.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
fccc5ac29a
gnu: r-stopwords: Update to 2.1. 
* gnu/packages/cran.scm (r-stopwords): Update to 2.1.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
cdbe38c682
gnu: r-isocodes: Update to 2020.12.04. 
* gnu/packages/cran.scm (r-isocodes): Update to 2020.12.04.
 2020-12-09 22:03:37 +01:00
Ricardo Wurmus
5a4b3d642c
gnu: r-fda: Update to 5.1.7. 
* gnu/packages/cran.scm (r-fda): Update to 5.1.7.
[propagated-inputs]: Add r-fds.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
b937197a14
gnu: r-r-filesets: Update to 2.14.0. 
* gnu/packages/cran.scm (r-r-filesets): Update to 2.14.0.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
3e44c41bcb
gnu: r-abtest: Update to 0.2.2. 
* gnu/packages/cran.scm (r-abtest): Update to 0.2.2.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
6ad24c2b09
gnu: r-showtext: Update to 0.9-1. 
* gnu/packages/cran.scm (r-showtext): Update to 0.9-1.
 2020-12-09 22:03:36 +01:00
Ricardo Wurmus
98d69d6f58
gnu: r-sysfonts: Update to 0.8.2. 
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.2.
 2020-12-09 22:03:36 +01:00