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Author SHA1 Message Date
Ricardo Wurmus
7d6efd2b6c
gnu: r-openssl: Update to 1.4. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.
 2019-06-01 23:04:26 +02:00
Ricardo Wurmus
f53b4a6b77
gnu: r-biocviews: Update to 1.52.2. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.2.
[propagated-inputs]: Add r-biocmanager.
 2019-06-01 23:04:26 +02:00
Timothy Sample
2ccc9d692a
gnu: Add gash. 
* gnu/packages/shells.scm (gash): New variable.
 2019-06-01 14:47:56 -04:00
Guillaume LE VAILLANT
a0c3a2e3a1
gnu: Add txr. 
* gnu/packages/lisp.scm (txr): New variable.
* gnu/packages/patches/txr-shell.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-01 15:26:30 +02:00
Robert Vollmert
0be465924c
tests: Indent hackage tests 
* tests/hackage.scm: Reindent using etc/indent-code.el.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-01 15:26:30 +02:00
Robert Vollmert
4110cde005
tests: hackage: Don't mock hackage-fetch. 
* tests/hackage.scm: Pass a string input port to tests instead of
mocking hackage download.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-01 15:26:30 +02:00
Robert Vollmert
55c98f3261
tests: hackage: Factor out package pattern. 
* tests/hackage.scm: Import result pattern matching via helper.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-01 15:26:30 +02:00
Ludovic Courtès
87399dfc20
lzlib: 'make-lzip-input-port' better handles end of decompression. 
Suggested by Pierre Neidhardt <mail@ambrevar.xyz>.

* guix/lzlib.scm (lzread!): Call 'lz-decompress-finish' when
'feed-decoder!' returns EOF.  Call 'lz-decompress-finished?' to
determine end of compression.
 2019-06-01 15:26:30 +02:00
Mark H Weaver
b6cf7e54ea
gnu: linux-libre: Update to 5.1.6. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.6.
(%linux-libre-hash): Update hash.
 2019-06-01 01:43:11 -04:00
Mark H Weaver
bc5d9ae7c9
gnu: linux-libre@4.19: Update to 4.19.47. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.47.
(%linux-libre-4.19-hash): Update hash.
 2019-06-01 01:40:52 -04:00
Mark H Weaver
83c0672877
gnu: linux-libre@4.14: Update to 4.14.123. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.123.
(%linux-libre-4.14-hash): Update hash.
 2019-06-01 01:39:06 -04:00
Mark H Weaver
9d96994c62
gnu: linux-libre@4.9: Update to 4.9.180. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.180.
 2019-06-01 01:37:28 -04:00
Robert Vollmert
1cc12357a6
import: hackage: Update list of ghc-included packages. 
Update the list of excepted dependencies for current ghc-8.4, based on the
release notes at
https://downloads.haskell.org/~ghc/8.4.3/docs/html/users_guide/8.4.3-notes.html

Particularly, this adds `text` to the list, which is a dependency of `parsec`
which was already on the list before, causing build failures with updated
versions of the `text` package.

* guix/import/hackage.scm (ghc-standard-libraries): Update list.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-06-01 06:22:57 +02:00
Vasile Dumitrascu
86d73d59c9
gnu: gnucash-docs: Update to 3.5. 
* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.5.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2019-05-31 23:06:10 -04:00
Vasile Dumitrascu
d4cb92e707
gnu: gnucash: Update to 3.5. 
* gnu/packages/gnucash.scm (gnucash): Update to 3.5.
[source]: Remove unneeded patch.
* gnu/packages/patches/gnucash-fix-test-transaction-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2019-05-31 23:06:10 -04:00
Eric Bavier
4d44bcad56
gnu: dealii-openmpi: Add hdf5-parallel-openmpi input. 
* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Add hdf5-parallel-openmpi.
 2019-05-31 19:41:41 -05:00
Eric Bavier
a13e0f3db4
gnu: slepc: Update to 3.11.1. 
* gnu/packages/maths.scm (slepc): Update to 3.11.1.
[native-inputs]: Add petsc:examples.
[arguments]: Add PETSCCONFIGDIR to #:make-flags.
 2019-05-31 19:41:41 -05:00
Eric Bavier
4f7a4a06c2
gnu: petsc: Update to 3.11.2. 
* gnu/packages/maths.scm (petsc): Update to 3.11.2.
 2019-05-31 19:41:41 -05:00
Eric Bavier
e586c6faf3
gnu: petsc-complex-mpi: Setup MPI for tests. 
* gnu/packages/maths.scm (petsc-complex-mpi)[arguments]: Add 'mpi-setup
phase.
 2019-05-31 19:41:41 -05:00
Kei Kebreau
5c48519204
gnu: Add mousepad. 
* gnu/packages/xfce.scm (mousepad): New variable.
 2019-05-31 18:54:20 -04:00
Guillaume LE VAILLANT
7293e3dba1
gnu: Add zbar. 
* gnu/packages/aidc.scm (zbar): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 23:21:02 +02:00
Christopher Baines
2177d9222f
services: Add patchwork. 
* gnu/service/web.scm (<patchwork-database-configuration>
<patchwork-settings-module>, <patchwork-configuration>): New record types.
(patchwork-virtualhost): New procedure.
(patchwork-service-type): New variable.
* gnu/tests/web.scm (%test-patchwork): New variable.
* doc/guix.text (Web Services): Document it.
 2019-05-31 20:22:23 +01:00
Christopher Baines
4764c6cc46
gnu: Add patchwork. 
* gnu/packages/patchutils.scm (patchwork): New variable.
 2019-05-31 20:22:23 +01:00
Christopher Baines
f6b0e1f8ff
services: Add getmail. 
Getmail is a mail retriever written in Python, this commit adds a service-type
to run getmail. I'm looking at this, as it's a convinient way of getting
mailing list messages in to Patchwork.

I initially tried putting this in the (gnu services mail) module, but due to
also trying to use the define-configuration pattern, it conflicted with the
dovecot service.

* gnu/services/getmail.scm: New file.
* gnu/local.mk: Add it.
* gnu/tests/mail.scm (%getmail-os, %test-getmail): New variables.
(run-getmail-test): New procedure.
 2019-05-31 20:22:20 +01:00
Leo Famulari
9bc1de3134
gnu: Go 1.4: Fix typo. 
* gnu/packages/golang.scm (go-1.4): Fix typo in comment.
 2019-05-31 10:30:21 -04:00
Julien Lepiller
db6dd04c3d
gnu: gtksourceview-2: Fix finding default data. 
* gnu/packages/patches/gtksourceview-2-add-default-directory.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtksourceview-2)[source]: Use it.
 2019-05-31 14:41:38 +02:00
Julien Lepiller
27489e7f73
gnu: php: Update to 7.3.6. 
* gnu/packages/php.scm (php): Update to 7.3.6.
 2019-05-31 14:41:32 +02:00
Ricardo Wurmus
1a24f855c8
gnu: Add r-birta. 
* gnu/packages/bioconductor.scm (r-birta): New variable.
 2019-05-31 14:40:29 +02:00
Ricardo Wurmus
81e3de01ae
gnu: Add r-birewire. 
* gnu/packages/bioconductor.scm (r-birewire): New variable.
 2019-05-31 14:40:20 +02:00
Ricardo Wurmus
95bf71c307
gnu: r-seriation: Update to 1.2-5. 
* gnu/packages/cran.scm (r-seriation): Update to 1.2-5.
 2019-05-31 14:29:32 +02:00
Brian Leung
2e62ba46e2
gnu: emacs-diff-hl: Update to 1.8.6. 
* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.6.
[source]: Fetch from git.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:21:06 +02:00
Brian Leung
66712cc0ed
gnu: emacs-helm: Update to 3.2. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.2.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:20:20 +02:00
Brian Leung
f42399b5e5
gnu: emacs-counsel-tramp: Update to 0.6.3. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-tramp): Update to 0.6.3.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:19:53 +02:00
Brian Leung
ea82e3b266
gnu: emacs-editorconfig: Update to 0.8.0. 
* gnu/packages/emacs-xyz.scm (emacs-editorconfig): Update to 0.8.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:19:18 +02:00
Brian Leung
265ee14650
gnu: emacs-exec-path-from-shell: Update to 1.12. 
* gnu/packages/emacs-xyz.scm (emacs-exec-path-from-shell): Update to 1.12.
[source]: Use git-fetch.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:18:29 +02:00
LaFreniere, Joseph
8ae48674ce
gnu: Add emacs-reformatter. 
* gnu/packages/emacs-xyz.scm (emacs-reformatter): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:15:52 +02:00
Joseph LaFreniere
b0eaead510
gnu: Add emacs-ivy-pass. 
* gnu/packages/emacs-xyz.scm (emacs-ivy-pass): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 09:56:17 +02:00
Rutger Helling
e637744547
gnu: kitty: Update to 0.14.1. 
* gnu/packages/terminals.scm (kitty): Update to 0.14.1.
 2019-05-31 08:33:19 +02:00
Vagrant Cascadian
ff793da669
gnu: diffoscope: Update to version 115-1.7f3416f. 
* gnu/packages/package-management (diffoscope):
  [package] Update to version 115-1.7f3416f.
  [source] Switch to using git-fetch.
  [inputs] Move python-pytest and python-chardet ...
  [native-inputs] ... to here.
  [arguments] Move comment to fit line length.
 2019-05-30 16:04:30 -07:00
Marius Bakke
f87a7cc60e
gnu: libev: Update to 4.25. 
* gnu/packages/libevent.scm (libev): Update to 4.25.
 2019-05-30 14:07:56 +02:00
Ricardo Wurmus
add5ecfd68
gnu: r-biocviews: Update to 1.52.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.1.
 2019-05-30 13:41:10 +02:00
Ricardo Wurmus
782a7f4655
gnu: r-tibble: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.2.
 2019-05-30 13:41:04 +02:00
Ricardo Wurmus
d1ee1540d4
gnu: r-dose: Update to 3.10.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
 2019-05-30 13:40:48 +02:00
Andy Tai
169d63f533
gnu: Add gthumb. 
* gnu/packages/gnome.scm (gthumb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-30 11:50:05 +02:00
Reza Alizadeh Majd
dc37301330
gnu: sddm: Add QtQuick-related dependencies to sddm. 
* gnu/packages/display-managers.scm (sddm): add QtQuick related
dependencies to sddm package in order to `sddm-greeter` application
to load user defined themes which are based on QtQuick.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-29 23:16:49 +02:00
Ludovic Courtès
73bddab545
publish: Factorize 'compress-nar'. 
* guix/scripts/publish.scm (compress-nar): New procedure.
(bake-narinfo+nar): Use it.
 2019-05-29 23:16:49 +02:00
Ludovic Courtès
e84e036943
publish: Remove outdated comment. 
* guix/scripts/publish.scm (make-request-handler): Remove outdated TODO.
 2019-05-29 23:16:49 +02:00
Ricardo Wurmus
4c8603e808
gnu: r-statmod: Update to 1.4.32. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
 2019-05-29 22:38:05 +02:00
Ricardo Wurmus
765d327c85
gnu: r-fields: Update to 9.8-3. 
* gnu/packages/cran.scm (r-fields): Update to 9.8-3.
 2019-05-29 22:38:05 +02:00
Ricardo Wurmus
a1ac29f80d
gnu: r-bayestestr: Update to 0.2.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
 2019-05-29 22:38:05 +02:00