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Author SHA1 Message Date
Ben Woodcroft
9602e3cce9
gnu: python2-dendropy: Fix tests. 
* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched
source.
[arguments]: Use nose to run tests.
[native-inputs]: Add python2-nose.
 2016-10-08 21:38:17 +10:00
Leo Famulari
f803f775d2
gnu: vigra: Workaround rounding error in test suite on 32-bit CPUs. 
* gnu/packages/image.scm (vigra)[arguments]: Pass '-ffloat-store' to
C_FLAGS and CXX_FLAGS.
 2016-10-07 22:44:30 -04:00
Ricardo Wurmus
382aacc5a3
gnu: drumstick: Update to 1.1.0. 
* gnu/packages/music.scm (drumstick): Update to 1.1.0.
 2016-10-08 00:15:53 +02:00
Ricardo Wurmus
c8ebb4c472
doc: Remove GHC from examples for propagation. 
* doc/guix.texi (package Reference): Remove GHC from the list of
languages for which library run-time dependencies must be propagated.
 2016-10-08 00:03:29 +02:00
Ricardo Wurmus
e35ce6893c
gnu: tbb: Update to 2017_20160916. 
* gnu/packages/tbb.scm (tbb): Update to 2017_20160916.
 2016-10-08 00:03:24 +02:00
Eric Bavier
b8b129ebd8
utils: Support defaults in substitute-keyword-arguments. 
* guix/utils.scm (collect-default-args, expand-default-args): New
syntax.
(substitute-keyword-arguments): Allow default value declarations.
* tests/utils.scm (substitute-keyword-arguments): New test.
 2016-10-07 07:42:05 -05:00
Eric Bavier
347df60158
utils: Fix default-keyword-arguments. 
* guix/utils.scm (default-keyword-arguments): Properly test for present
keywords.
* tests/utils.scm (default-keyword-arguments): New test.
 2016-10-07 07:41:57 -05:00
Efraim Flashner
fb29e737d4
gnu: ncdu: Update to 1.12. 
* gnu/packages/ncdu.scm (ncdu): Update to 1.12.
[source]: Use https.
[license]: Use https.
[home-page]: Use https.
 2016-10-07 14:26:12 +03:00
Ricardo Wurmus
b314360f30
gnu: abbaye: Update source URL. 
* gnu/packages/games.scm (abbaye)[source]: Update tarball URL.
 2016-10-07 09:22:44 +02:00
Leo Famulari
ae336f8b84
gnu: khal: Update to 0.8.4. 
* gnu/packages/calendar.scm (khal): Update to 0.8.4.
 2016-10-07 01:48:45 -04:00
Leo Famulari
7ca97fae36
gnu: lvm2: Make sure compiled objects are stripped. 
* gnu/packages/linux.scm (lvm2)[arguments]: Add 'make-objects-writeable' phase.
 2016-10-06 17:43:44 -04:00
Leo Famulari
123c0ffb87
gnu: lvm2: Update to 2.02.166. 
* gnu/packages/linux.scm (lvm2): Update to 2.02.166.
 2016-10-06 17:43:44 -04:00
Leo Famulari
3afbc6b3c3
gnu: lvm2: Use 'modify-phases'. 
* gnu/packages/linux.scm (lvm2)[arguments]: Use 'modify-phases'.
 2016-10-06 17:43:39 -04:00
Ludovic Courtès
af0ba93825
guix system: Return two values when failing to talk to shepherd. 
Before that, when 'guix system reconfigure' failed to talk to shepherd
and a 'system-error' was raised, we would get a "too few values returned
to continuation" error, which would prevent GRUB from being installed.

Reported by fps on #guix.

* guix/scripts/system.scm (warn-on-system-error): Remove.
(with-shepherd-error-handling): Inline former 'warn-on-system-error'.
Return two values when 'system-error' is raised.
 2016-10-06 22:59:47 +02:00
Efraim Flashner
59fed2b609
gnu: nginx: Update to 1.11.4. 
* gnu/packages/web.scm (nginx): Update to 1.11.4.
[source] Use https.
[home-page]: Use https.
 2016-10-06 22:01:00 +03:00
Thomas Danckaert
0f43f8354c
gnu: Add hdf-eos5. 
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-06 18:14:45 +02:00
Ludovic Courtès
b282c78192
nls: Update 'de' translation. 2016-10-06 18:14:45 +02:00
8p8c
b94ee996ce
gnu: font-hack: Remove empty doc directory. 
* gnu/packages/fonts.scm (font-hack)[arguments]: Remove superfluous code
in #:builder.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-06 20:59:05 +08:00
8p8c
3126fd8820
services: xorg: Add ATI video driver to the default modules. 
* gnu/services/xorg.scm (%default-xorg-modules): Add xf86-video-ati.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-06 20:46:50 +08:00
Andy Patterson
fb7dc6d647
gnu: ecl: Honour XDG_DATA_DIRS/ecl-bundle-systems. 
* gnu/packages/lisp.scm (ecl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-06 20:33:55 +08:00
Andy Patterson
8d0489aeb6
gnu: sbcl: Honour XDG_DATA_DIRS/sbcl-bundle-systems. 
* gnu/packages/lisp.scm (asdf-substitutions): New variable.
(sbcl)[source]: Add snippet.
[native-search-paths]: Add XDG_DATA_DIRS.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-10-06 20:33:55 +08:00
Ricardo Wurmus
eb0ff8a382
gnu: Add ghc-pandoc-citeproc. 
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): New variable.
 2016-10-06 14:18:25 +02:00
Ricardo Wurmus
bfdfb0f63f
gnu: Add ghc-xml-conduit. 
* gnu/packages/haskell.scm (ghc-xml-conduit): New variable.
 2016-10-06 14:18:25 +02:00
Ricardo Wurmus
e9ef2c51d5
gnu: Add ghc-xml-types. 
* gnu/packages/haskell.scm (ghc-xml-types): New variable.
 2016-10-06 14:18:25 +02:00
Ricardo Wurmus
1aa45bbf6f
gnu: Add ghc-conduit-extra. 
* gnu/packages/haskell.scm (ghc-conduit-extra): New variable.
 2016-10-06 14:18:25 +02:00
Ricardo Wurmus
9ce764b689
gnu: Add ghc-rfc5051. 
* gnu/packages/haskell.scm (ghc-rfc5051): New variable.
 2016-10-06 14:18:24 +02:00
Ricardo Wurmus
37e02bf65b
gnu: Add ghc-hs-bibutils. 
* gnu/packages/haskell.scm (ghc-hs-bibutils): New variable.
 2016-10-06 14:18:24 +02:00
Ricardo Wurmus
b376463552
gnu: ghc-streaming-commons: Remove standard packages from inputs. 
The "directory" and "transformers" modules are part of GHC and should
not be among the inputs to avoid conflicts.

* gnu/packages/haskell.scm (ghc-streaming-commons)[inputs]: Remove
"ghc-directory" and "ghc-transformers".
 2016-10-06 14:18:21 +02:00
Ricardo Wurmus
fc47c7d635
gnu: Add r-bsgenome-celegans-ucsc-ce10. 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New
variable.
 2016-10-06 10:33:43 +02:00
Leo Famulari
6a4cbc6f12
gnu: nss-certs and nss: Update to 3.27.1. 
* gnu/packages/certs.scm (nss-certs): Update to 3.27.1.
* gnu/packages/gnuzilla.scm (nss): Update to 3.27.1.
 2016-10-05 20:04:50 -04:00
Leo Famulari
1459476089
gnu: e2fsprogs: Fix typo in comment. 
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Fix typo in comment.
 2016-10-05 18:59:29 -04:00
Leo Famulari
7d45365684
gnu: e2fsprogs: Disable parallel build. 
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Add #:parallel-build? #f.
 2016-10-05 17:41:44 -04:00
Leo Famulari
87312f8aa1
gnu: json-c: Update to 0.12.1. 
* gnu/packages/web.scm (json-c): Update to 0.12.1.
 2016-10-05 17:38:48 -04:00
Leo Famulari
813062a5f7
gnu: libxvmc: Fix CVE-2016-7953. 
* gnu/packages/patches/libxvmc-CVE-2016-7953.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxvmc)[replacement]: New field.
(libxvmc/fixed): New variable.
 2016-10-05 17:37:23 -04:00
Leo Famulari
e73631a906
gnu: libxv: Fix CVE-2016-5407. 
* gnu/packages/patches/libxv-CVE-2016-5407.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxv)[replacement]: New field.
(libxv/fixed): New variable.
 2016-10-05 17:37:22 -04:00
Leo Famulari
1f90b80f8b
gnu: libxtst: Fix CVE-2016-{7951,7952}. 
* gnu/packages/patches/libxtst-CVE-2016-7951-CVE-2016-7952.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxtst)[replacement]: New field.
(libxtst/fixed): New variable.
 2016-10-05 17:37:22 -04:00
Leo Famulari
666d40193c
gnu: libxrender: Fix CVE-2016-{7949,7950}. 
* gnu/packages/patches/libxrender-CVE-2016-7949.patch,
gnu/packages/patches/libxrender-CVE-2016-7950.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libxrender)[replacement]: New field.
(libxrender/fixed): New variable.
 2016-10-05 17:37:22 -04:00
Leo Famulari
a300db1c7f
gnu: libxrandr: Fix CVE-2016-{7947,7948}. 
* gnu/packages/patches/libxrandr-CVE-2016-7947-CVE-2016-7948.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxrandr)[replacement]: New field.
(libxrandr/fixed): New variable.
 2016-10-05 17:37:21 -04:00
Leo Famulari
b78ba2274f
gnu: libxi: Fix CVE-2016-{7945,7946}. 
* gnu/packages/patches/libxi-CVE-2016-7945-CVE-2016-7946.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxi)[replacement]: New field.
(libxi/fixed): New variable.
 2016-10-05 17:37:21 -04:00
Leo Famulari
b50c6bf2a8
gnu: libxfixes: Fix CVE-2016-7944. 
* gnu/packages/patches/libxfixes-CVE-2016-7944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxfixes)[replacement]: New field.
(libxfixes/fixed): New variable.
 2016-10-05 17:37:21 -04:00
Leo Famulari
13c10b4ca4
gnu: libx11: Fix CVE-2016-{7942,7943}. 
* gnu/packages/patches/libx11-CVE-2016-7942.patch,
gnu/packages/patches/libx11-CVE-2016-7943.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (libx11)[replacement]: New field.
(libx11/fixed): New variable.
 2016-10-05 17:37:15 -04:00
ng0
4ae1f8cf39
Update e-mail address for ng0. 
* .mailmap: Add new entries for ng0.
 2016-10-05 16:41:27 -04:00
ng0
81d5a62fb1
gnu: Remove lispf4. 
The package in its current state is unusable and documentation with unclear
licenses is included.

Also, the file 'lispf42.c' (and possible others) is generated C code and
thus not "source code" as we define it.

* gnu/packages/lisp.scm (lispf4): Delete variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-05 16:23:56 -04:00
Tobias Geerinckx-Rice
151df6ab3d
gnu: btrfs-progs: Update to 4.8. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.
 2016-10-05 22:07:21 +02:00
Leo Famulari
bda45da336
gnu: libass: Update to 0.13.4 [fixes CVE-2016-{7969,7970,7972}. 
* gnu/packages/video.scm (libass): Update to 0.13.4.
 2016-10-05 16:04:26 -04:00
Efraim Flashner
a4796b29e1
gnu: gnucash: Update to 2.6.14. 
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.14.
 2016-10-05 20:42:49 +03:00
Danny Milosavljevic
b04ca7a12b
gnu: Add sunxi-tools. 
* gnu/packages/admin.scm (sunxi-tools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-05 18:50:52 +02:00
Leo Famulari
517318adf0
gnu: Add Vc. 
* gnu/packages/maths.scm (vc): New variable.
 2016-10-05 12:49:41 -04:00
Ludovic Courtès
9d50da7060
gnu: wordnet: Make sure the self-reference is visible to the GC. 
Before that, "guix gc --references $(guix build wordnet)" would not show
WordNet itself, erroneously so.

* gnu/packages/wordnet.scm (wordnet)[arguments]: Add -fno-builtin-strcpy
  to #:configure-flags.
 2016-10-05 18:35:55 +02:00
Ludovic Courtès
939f87438c
gnu: wordnet: Compile with optimizations. 
* gnu/packages/wordnet.scm (wordnet)[arguments]: Add -O2 to
  #:configure-flags.
 2016-10-05 18:35:55 +02:00