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Author SHA1 Message Date
Ricardo Wurmus
25847e60fe
gnu: r-dearseq: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.1.
[propagated-inputs]: Add r-compquadform, r-dplyr, r-magrittr, r-reshape2, r-rlang,
r-tibble, and r-viridislite.
[native-inputs]: Add r-knitr.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
b0bd7ec471
gnu: r-cummerbund: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.38.0.
 2022-05-28 23:19:07 +02:00
Ricardo Wurmus
6f0430cdc2
gnu: r-coverageview: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.34.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
00d51727e5
gnu: r-biocgenerics: Update to 0.42.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.42.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
b19400063e
gnu: r-biocversion: Update to 3.15.2. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.15.2.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
75628fc7ce
gnu: r-aneufinder: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.24.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
5f9a73d665
gnu: r-adductomicsr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.12.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
a5e1a37cdf
gnu: r-agilp: Update to 3.28.0. 
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.28.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
e704ed78b5
gnu: r-aggregatebiovar: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.6.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
6e1d256151
gnu: r-agdex: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.44.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
052d0d283a
gnu: r-affyrnadegradation: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.42.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
f4a85d5555
gnu: r-affixcan: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.14.0.
 2022-05-28 23:19:06 +02:00
Ricardo Wurmus
3e524e46a0
gnu: r-adsplit: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.66.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
3a29b78fa9
gnu: r-adimpute: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.6.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
1d3b5f80e7
gnu: r-adamgui: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.12.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
69dc67d9aa
gnu: r-adam: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.12.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
5911a8992b
gnu: r-absseq: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.50.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
67d858b97c
gnu: r-abarray: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.64.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
90d165ea86
gnu: r-biostrings: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.0.
[arguments]: Remove build phase 'patch-for-R-4.2.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
413133e430
gnu: Add r-decoupler. 
* gnu/packages/bioconductor.scm (r-decoupler): New variable.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
556ca8ba21
guix: Upgrade to Bioconductor 3.15. 
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.15.
* guix/import/cran.scm (%bioconductor-version): Same.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
641f5c599e
gnu: apache-arrow: Update to 8.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 8.0.0.
 2022-05-28 23:19:05 +02:00
Ricardo Wurmus
1445f2c508
gnu: Add r-rcppml. 
* gnu/packages/cran.scm (r-rcppml): New variable.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
39dab63790
gnu: Add r-dixontest. 
* gnu/packages/cran.scm (r-dixontest): New variable.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
d723619fc3
gnu: r-biostrings: Patch for R 4.2.0. 
* gnu/packages/bioconductor.scm (r-biostrings)[arguments]: Add build phase
'patch-for-R-4.2.0.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
02c8c3ffbd
gnu: r-rcurl: Update to 1.98-1.6. 
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.6.
[source]: Take from CRAN.
[arguments]: Remove trailing #T from build phase.
[native-inputs]: Add libxml2.
[inputs]: Use new input list style.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
2e2fed31a3
gnu: nlopt: Update to 2.7.1. 
* gnu/packages/maths.scm (nlopt): Update to 2.7.1.
[source]: Fetch from git.
[build-system]: Use cmake-build-system.
[arguments]: Adjuts 'set-libnlopt-file-name phase.
[inputs]: Replace guile-2.0 with guile-3.0; add octave and python.
[native-inputs]: Add swig.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
48328055d8
gnu: r-binom: Update to 1.1-1.1. 
* gnu/packages/statistics.scm (r-binom): Update to 1.1-1.1.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
7fadf9bad7
gnu: r-desctools: Update to 0.99.45. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.45.
[propagated-inputs]: Add r-httr and r-readxl.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
55a04c5245
gnu: r-datasaurus: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-datasaurus): Update to 0.1.6.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
7d9ed0b53d
gnu: r-logspline: Update to 2.1.17. 
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.17.
 2022-05-28 23:19:04 +02:00
Ricardo Wurmus
217d08960a
gnu: r-clubsandwich: Update to 0.5.6. 
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.6.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
a415f00c5d
gnu: r-tclust: Update to 1.5-1. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.5-1.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
58c5fe1918
gnu: r-car: Update to 3.0-13. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-13.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
40daf6db0a
gnu: r-nloptr: Update to 2.0.3. 
* gnu/packages/statistics.scm (r-nloptr): Update to 2.0.3.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
8685079a32
gnu: r-quantreg: Update to 5.93. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.93.
[propagated-inputs]: Add r-mass and r-survival.
[native-inputs]: Add r-r-rsp.
[arguments]: Add phase 'set-HOME.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
f4721c4a41
gnu: r-rrcov: Update to 1.7-0. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-0.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
f327949d97
gnu: r-pcapp: Update to 2.0-1. 
* gnu/packages/statistics.scm (r-pcapp): Update to 2.0-1.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
347104de8a
gnu: r-mclust: Update to 5.4.10. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.10.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
917c943fbc
gnu: r-randomforest: Update to 4.7-1.1. 
* gnu/packages/statistics.scm (r-randomforest): Update to 4.7-1.1.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
d1856b061c
gnu: r-lars: Update to 1.3. 
* gnu/packages/statistics.scm (r-lars): Update to 1.3.
 2022-05-28 23:19:03 +02:00
Ricardo Wurmus
98e40f2d46
gnu: r-gplots: Update to 3.1.3. 
* gnu/packages/statistics.scm (r-gplots): Update to 3.1.3.
 2022-05-28 23:19:02 +02:00
Ricardo Wurmus
9879075a14
gnu: r-gdata: Update to 2.18.0.1. 
* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.1.
 2022-05-28 23:19:02 +02:00
Ricardo Wurmus
a853e9c7c4
gnu: r-gtools: Update to 3.9.2.1. 
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.1.
 2022-05-28 23:19:02 +02:00
Ricardo Wurmus
417517cd3f
gnu: r-hmisc: Update to 4.7-0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.7-0.
 2022-05-28 23:19:02 +02:00
Ricardo Wurmus
e6b17481d9
gnu: r-matrixstats: Update to 0.62.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.62.0.
 2022-05-28 23:19:02 +02:00
Ricardo Wurmus
334a26cb37
gnu: r-bigmemory: Update to 4.6.1. 
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.6.1.
[propagated-inputs]: Add r-uuid.
[inputs]: Add util-linux:lib.
 2022-05-28 23:19:02 +02:00
Ricardo Wurmus
2af5707049
gnu: r-rtsne: Update to 0.16. 
* gnu/packages/statistics.scm (r-rtsne): Update to 0.16.
 2022-05-28 23:19:02 +02:00
Ricardo Wurmus
c7563bf578
gnu: r-glmnet: Update to 4.1-4. 
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-4.
 2022-05-28 23:19:02 +02:00
Ricardo Wurmus
33c177ee36
gnu: r-dt: Update to 0.23. 
* gnu/packages/statistics.scm (r-dt): Update to 0.23.
 2022-05-28 23:19:02 +02:00