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Author SHA1 Message Date
Ricardo Wurmus
491ce4f083
gnu: r-heatmaply: Add r-knitr. 
* gnu/packages/cran.scm (r-heatmaply)[native-inputs]: Add r-knitr.
 2020-03-07 20:02:14 +01:00
Ricardo Wurmus
d56553edc3
gnu: r-methylkit: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-methylkit)[native-inputs]: Add r-knitr.
 2020-03-07 19:42:34 +01:00
Ricardo Wurmus
06fc1882f2
gnu: r-ggrepel: Add r-knitr. 
* gnu/packages/cran.scm (r-ggrepel)[native-inputs]: Add r-knitr.
 2020-03-07 19:38:31 +01:00
Ricardo Wurmus
c363722e81
import/cran: Add vignette builder to native inputs. 
* guix/import/cran.scm (needs-knitr?): New procedure.
(description->package): Use it.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
bf3722f9db
gnu: r-depecher: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
a2512e436b
gnu: r-xcms: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
f0aaa4482a
gnu: r-yamss: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus
56bf00b94e
gnu: r-viridis: Add r-knitr. 
* gnu/packages/statistics.scm (r-viridis)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Ricardo Wurmus
3b7c644569
gnu: r-vsn: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-vsn)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Michael Rohleder
9eed0a74f9
fd: Install bash completion properly. 
* gnu/packages/rust-apps.scm (fd)[arguments]: Replace
  the dash in "bash-completion.d" with an underscore.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 18:32:27 +01:00
Robert Smith
880a316591
gnu: anki: Fix mpv audio playback 
* gnu/packages/patches/anki-mpv-args.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/education.scm (anki): Adjust accordingly, wrap anki's
  PATH to include mpv executable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 17:29:34 +01:00
Pierre Neidhardt
262d6ed465
gnu: next: Fix build with SBCL 2.0.2. 
* gnu/packages/web-browsers.scm (next)[arguments]: Fix lambda-list type error
  on SBCL 2.0.2.
 2020-03-07 17:12:35 +01:00
Tobias Geerinckx-Rice
322ea25c56
gnu: s6-rc: Update to 0.5.1.2. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
072102f651
gnu: s6-portable-utils: Update to 2.2.2.2. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.2.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
82853fbf8c
gnu: s6-networking: Update to 2.3.1.2. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
5cecf3f4e2
gnu: s6-linux-utils: Update to 2.5.1.2. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
1d57075049
gnu: scm: Update to 5f3. 
* gnu/packages/scheme.scm (scm): Update to 5f3.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
db34ab7350
gnu: ntp: Update to 4.2.8p14 [fixes Sec 3610, Sec 3596, Sec 3592]. 
https://support.ntp.org/bin/view/Main/SecurityNotice#Recent_Vulnerabilities

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p14.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice
e4a9f135f7
gnu: ntp: Use HTTPS in metadata URIs 
* gnu/packages/ntp.scm (ntp)[home-page, license]: Use HTTPS.
 2020-03-07 16:04:20 +01:00
Vincent Legoll
e7ba60ddce
gnu: unbound: Update to 1.10.0. 
* gnu/packages/dns.scm (unbound): Update to 1.10.0.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 14:51:37 +01:00
Vincent Legoll
4c8b874f95
gnu: ppp: Update to 2.4.8-1.8d45443 [fixes CVE-2020-8597]. 
* gnu/packages/samba.scm (ppp): Update to 2.4.8-1.8d45443.
Use GIT-FETCH and GIT-FILE-NAME.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-03-07 14:27:06 +01:00
Tobias Geerinckx-Rice
4f236f84a9
gnu: Use HTTPS for commons.apache.org home pages. 
* gnu/packages/java.scm (java-commons-io, java-commons-logging-minimal)
(java-commons-math3, java-commons-jxpath, java-commons-daemon)
(java-commons-net, java-commons-vfs, java-commons-beanutils)
(java-commons-lang, java-commons-lang3)[home-page]:Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
c82ddf3360
gnu: java-joda-convert: Use HTTPS home page. 
* gnu/packages/java.scm (java-joda-convert)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
4d1ddb5156
gnu: java-log4j-1.2-api: Use HTTPS home page. 
* gnu/packages/java.scm (java-log4j-1.2-api)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
c901060547
gnu: java-testng: Use HTTPS home page. 
* gnu/packages/java.scm (java-testng)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
b93a0c1e6d
gnu: java-junit: Use HTTPS home page. 
* gnu/packages/java.scm (java-junit)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
a809d63252
gnu: java-openchart2: Use HTTPS home page. 
* gnu/packages/java.scm (java-openchart2)[home-page]: Use HTTPS.
 2020-03-07 12:48:19 +01:00
Tobias Geerinckx-Rice
a15b45290d
gnu: raincat: Update home page. 
* gnu/packages/haskell-apps.scm (raincat)[home-page]: Update.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
f23365fa2c
gnu: instantmusic: Update home page. 
* gnu/packages/music.scm (instantmusic)[home-page]: Update.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
5969598149
gnu: openblas: Use HTTPS home page. 
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
14a5146f3a
gnu: python-execnet: Use HTTPS home page. 
* gnu/packages/python-xyz.scm (python-execnet)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
cc31d17263
gnu: emacs-ffap-rfc-space: Use HTTPS home page. 
* gnu/packages/emacs-xyz.scm (emacs-ffap-rfc-space)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
6a0d1bd390
gnu: librecad: Use HTTPS home page. 
* gnu/packages/engineering.scm (librecad)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
c0dc417909
gnu: spice: Update to 0.14.3. 
* gnu/packages/spice.scm (spice): Update to 0.14.3.
[source]: Remove obsolete patch.
* gnu/packages/patches/spice-fix-test-armhf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
beecf815db
gnu: xfce4-weather-plugin: Update to 0.10.1. 
* gnu/packages/xfce.scm (xfce4-weather-plugin): Update to 0.10.1.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
3a5557a4d2
gnu: xfce4-clipman-plugin: Update to 1.4.4. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin): Update to 1.4.4.
 2020-03-07 12:48:18 +01:00
Tobias Geerinckx-Rice
0bbf14ce93
gnu: xfce4-clipman-plugin: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin)[source]: Hard-code NAME.
 2020-03-07 12:48:17 +01:00
Pierre Neidhardt
ece22a25b6
gnu: fmt: Switch back to url-fetch. 
* gnu/packages/pretty-print.scm (fmt)[source]: Use url-fetch instead of
  git-fetch since upstream uploads releases.  Both approaches produce the
  same package, but git-fetch requires more bandwidth.
 2020-03-07 12:37:14 +01:00
Pierre Neidhardt
0bc557fd70
gnu: cl-dbus: Remove unneeded inputs. 
* gnu/packages/lisp-xyz.scm (cl-dbus)[propagated-inputs]: Remove iolib
  subpackages now that iolib properly references them.
 2020-03-07 11:30:11 +01:00
Pierre Neidhardt
af5c4efff6
gnu: sbcl-iolib: Fix build to refer to its subpackages properly. 
* gnu/packages/lisp-xyz.scm (sbcl-iolib): Inherit from its subpackages instead
  of the other way around, so that they are automatically referenced in the
  generated .asd.
 2020-03-07 11:28:32 +01:00
Vagrant Cascadian
5fb3c00256
gnu: go-golang.org-x-sync-errgroup: Fix spelling of "cancellation". 
* gnu/packages/golang (go-golang.org-x-sync-errgroup)[synopsis]: Fix typo.
 2020-03-06 20:13:30 -08:00
Vagrant Cascadian
52c733124a
gnu: rust-named-pipe-0.4: Fix spelling of "asynchronous" 
* gnu/packages/crates-io (rust-named-pipe-0.4)[synopsis]: Fix typo.
  [description]: Fix typo.
 2020-03-06 20:13:28 -08:00
Vagrant Cascadian
92f4583208
gnu: r-d3network: Fix typo "This package". 
* gnu/packages/cran (r-d3network)[description]: Fix typo.
 2020-03-06 20:13:25 -08:00
Vagrant Cascadian
5b309c6242
gnu: ksystemlog: Fix spelling of "occurring". 
* gnu/packages/kde-sytemtools (ksystemlog)[description]: Fix typo.
 2020-03-06 20:13:23 -08:00
Vagrant Cascadian
adca9882be
gnu: unicode-cldr-common: Fix spelling of "information". 
* gnu/packages/unicode (unicode-cldr-common)[description]: Fix typo.
 2020-03-06 20:13:19 -08:00
Vagrant Cascadian
374540ff65
gnu: sdl-pango: Rename patch to fix guix lint warning about patch filename size. 
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapToSurface.patch:
  Rename to ...
* gnu/packages/patches/sdl-pango-fix-explicit-SDLPango_CopyFTBitmapTo.patch:
  ... this.
* gnu/local.mk: Update accordingly.
* gnu/packages/sdl.scm: Update accordingly.
 2020-03-06 17:34:00 -08:00
Vagrant Cascadian
789c02478a
gnu: akonadi: Rename patch to fix guix lint warning about patch filename size. 
* gnu/packages/patches/akonadi-Revert-Make-installation-properly-relocatabl.patch:
  Rename to ...
* gnu/packages/patches/akonadi-Revert-Make-installation-properly-relo.patch:
  ... this.
* gnu/packages/kde-pim (akonadi) Update accordingly.
* gnu/local.mk: Update accordingly.
 2020-03-06 17:33:56 -08:00
Tobias Geerinckx-Rice
b2ce10e3a9
gnu: yasm: Use HTTPS home page. 
* gnu/packages/assembly.scm (yasm)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00
Tobias Geerinckx-Rice
a4fdde47cc
gnu: jq: Use HTTPS home page. 
* gnu/packages/web.scm (jq)[home-page]: Use HTTPS.
 2020-03-07 01:42:51 +01:00