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Author SHA1 Message Date
Tobias Geerinckx-Rice
20b5b97381
gnu: python-rpy2: Update to 2.9.4. 
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
 2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice
db09a450d2
gnu: python-rpy2: Update home page. 
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice
93f9e0d9e9
gnu: r-iterators: Update to 1.0.10. 
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.10.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice
4370881631
gnu: r-foreign: Update to 0.8-71. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
 2018-08-21 07:17:05 +02:00
Chris Marusich
6fb6ac6857
gnu: services: Fix pcscd activation bug. 
Fixes: <https://bugs.gnu.org/32478>.

* gnu/services/security-token.scm (pcscd-activation): Idempotently create the
/var/lib/pcsc symlink so that it does not fail when it already exists.
 2018-08-20 21:43:56 -07:00
Tobias Geerinckx-Rice
6d863cdedd
gnu: r-openssl: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.2.
 2018-08-21 03:25:42 +02:00
Tobias Geerinckx-Rice
4481004fa4
gnu: r-modeltools: Update to 0.2-22. 
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-22.
 2018-08-21 03:25:41 +02:00
Tobias Geerinckx-Rice
8ecf3f7ea5
gnu: mysql: Update to 5.7.23. 
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
 2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice
7cbf06d8c2
gnu: mysql: Fix build. 
MySQL demands boost@1.59.0, and lying about it no longer works:

sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’:
sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token
   catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &)
                                                                                 ^
[...]

* gnu/packages/databases.scm (boost-for-mysql): New variable.
(mysql)[inputs]: Use that instead of the regular boost.
[arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
 2018-08-20 20:17:20 +02:00
Tobias Geerinckx-Rice
725449bd7a
gnu: python-pyodbc: Update to 4.0.24. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice
28635e5266
gnu: python-mysqlclient: Update to 1.3.13. 
* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice
db4e76416c
gnu: perl-dbd-sqlite: Update to 1.58. 
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice
9c112bee91
gnu: r-energy: Update to 1.7-5. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-5.
 2018-08-20 20:17:19 +02:00
Tobias Geerinckx-Rice
8b0701d97a
gnu: r-tinytex: Update to 0.6. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.6.
[propagated-inputs]: Add r-xfun.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice
2045af8035
gnu: r-xfun: Update to 0.3. 
* gnu/packages/cran.scm (r-xfun): Update to 0.3.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice
9b77f724c0
gnu: r-jomo: Update to 2.6-3. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-3.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice
cd4abb6d4a
gnu: r-trend: Update to 1.1.1. 
* gnu/packages/cran.scm (r-trend): Update to 1.1.1.
 2018-08-20 20:17:18 +02:00
Tobias Geerinckx-Rice
dc98bbcad4
gnu: r-lava: Update to 1.6.3. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.3.
 2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice
632cefdac9
gnu: r-mitml: Update to 0.3-6. 
* gnu/packages/cran.scm (r-mitml): Update to 0.3-6.
 2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice
658e37b6e8
gnu: r-vgam: Update to 1.0-6. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-6.
 2018-08-20 20:17:17 +02:00
Tobias Geerinckx-Rice
52773e5cf4
gnu: python-py: Use HTTPS home page. 
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
 2018-08-20 16:36:20 +02:00
Tobias Geerinckx-Rice
c85626bb0f
gnu: xpad: Update to 5.1.0. 
* gnu/packages/gnome.scm (xpad): Update to 5.1.0.
[arguments]: Remove obsolete ‘run-autogen’ phase.
 2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice
bc2f9dc3ce
gnu: emacs-f: Update to 0.20.0. 
* gnu/packages/emacs.scm (emacs-f): Update to 0.20.0.
 2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice
bd0570f21d
gnu: emacs-f: Don't use unstable tarball. 
* gnu/packages/emacs.scm (emacs-f)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-08-20 16:35:55 +02:00
Tobias Geerinckx-Rice
cb4baa4da6
gnu: gimp: Report bugs to Guix. 
Upstream prints this when running ./configure. Take the hint.

  NOTE: if you plan on packaging GIMP for distribution, it is
        recommended to override the bug report URL with option:
          --with-bug-report-url=https://example.com/
        so that you can filter packaging bugs from core bugs before
        reporting upstream.

* gnu/packages/gimp.scm (gimp)[arguments]: Customise bug report URI.
 2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice
0f83d6029e
gnu: gimp: Update to 2.10.6. 
* gnu/packages/gimp.scm (gimp): Update to 2.10.6.
 2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice
901888a854
gnu: gegl: Update to 0.4.8. 
* gnu/packages/gimp.scm (gegl): Update to 0.4.8.
 2018-08-20 16:35:54 +02:00
Tobias Geerinckx-Rice
3cae7f582e
gnu: babl: Update to 0.1.56. 
* gnu/packages/gimp.scm (babl): Update to 0.1.56.
 2018-08-20 16:35:54 +02:00
Ludovic Courtès
64bcc76c00
gnu: guile-ssh: Update to 0.11.3. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.3.
 2018-08-20 16:32:18 +02:00
Ludovic Courtès
0ec3800274
gnu: guile-json: Update to 1.1.1. 
* gnu/packages/guile.scm (guile-json): Update to 1.1.1.
[source]: Remove snippet.
[native-inputs]: Add PKG-CONFIG.
 2018-08-20 16:32:18 +02:00
Ludovic Courtès
a50eed201b
gnu: guile-redis: Update to 1.0.0. 
* gnu/packages/guile.scm (guile-redis): Update to 1.0.0.
[source]: Fetch from github.com.  Remove snippet.
[native-inputs]: Add AUTOCONF, AUTOMAKE, and PKG-CONFIG.
 2018-08-20 16:32:17 +02:00
Roel Janssen
e63da346cf
gnu: Update virtuoso-ose to 7.2.5. 
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.5.
 2018-08-20 16:13:45 +02:00
Rutger Helling
f307a9eca5
gnu: xpra: Update to 2.3.3. 
* gnu/packages/xorg.scm (xpra): Update to 2.3.3.
 2018-08-20 08:48:53 +02:00
Rutger Helling
346c146f7f
gnu: wine-staging: Update to 3.14. 
* gnu/packages/wine.scm (wine-staging): Update to 3.14.
 2018-08-20 08:17:49 +02:00
Rutger Helling
56d4b2163a
gnu: wine-staging-patchset-data: Update to 3.14. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.14.
 2018-08-20 08:17:49 +02:00
Leo Famulari
1feaca62d3
gnu: syncthing: Invoke build steps with INVOKE. 
* gnu/packages/syncthing.scm (syncthing)[arguments]: Use INVOKE.
 2018-08-19 17:50:48 -04:00
Marius Bakke
146c3b2160
gnu: libconfuse: Update to 3.2.2 [fixes CVE-2018-14447]. 
* gnu/packages/wm.scm (libconfuse): Update to 3.2.2.
 2018-08-19 18:40:30 +02:00
Ludovic Courtès
0b93d04ac5
gnu: gcc@4.8: Fix libsanitizer build issue. 
Fixes <https://bugs.gnu.org/32397>.
Reported by fis trivial <ybbs.daans@hotmail.com>.

* gnu/packages/patches/gcc-4.8-libsanitizer-fix.patch: New file.
* gnu/packages/gcc.scm (gcc-4.8)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-08-19 18:21:24 +02:00
Ludovic Courtès
6d1a7ce8ea
gnu: libchop: Fix build and test errors. 
* gnu/packages/backup.scm (libchop)[arguments]: New field.
 2018-08-19 18:21:24 +02:00
Ludovic Courtès
c9f898cd31
gnu: libchop: Require gperf 3.0. 
Fixes <https://bugs.gnu.org/32382>.
Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.

* gnu/packages/backup.scm (libchop)[native-inputs]: Use GPERF-3.0
instead of GPERF.
 2018-08-19 18:21:24 +02:00
Marius Bakke
a7bc1588e6
Merge branch 'staging' 2018-08-19 15:24:59 +02:00
Jan Nieuwenhuizen
8a502c3b60
gnu: mescc-tools: Update to 0.5.2. 
* gnu/packages/mes.scm (mescc-tools): Update to 0.5.2.
 2018-08-19 13:30:57 +02:00
Mark H Weaver
860c37b9f2
gnu: linux-libre: Update to 4.18.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.3.
(%linux-libre-hash): Update hash.
(%linux-libre-patches): Rename to ...
(%linux-libre-4.18-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Apply %linux-libre-4.18-patches.
 2018-08-19 02:19:20 -04:00
Mark H Weaver
08e43eba4e
gnu: linux-libre@4.14: Update to 4.14.65. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.65.
(%linux-libre-4.14-hash): Update hash.
 2018-08-19 02:16:53 -04:00
Mark H Weaver
ad6baf9dc1
gnu: linux-libre@4.9: Update to 4.9.122. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.122.
 2018-08-19 02:16:08 -04:00
Mark H Weaver
1ae8efa57d
gnu: linux-libre@4.4: Update to 4.4.150. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.150.
 2018-08-19 02:15:30 -04:00
Mark H Weaver
4ecd049074
Revert "gnu: linux-libre: Add fix from 4.4.150, 4.9.122, 4.14.65, 4.18.3." 
This reverts commit 50dbd26ce0.
 2018-08-19 02:13:49 -04:00
Kei Kebreau
b13ba3f1ba
gnu: gnuplot: Update to 5.2.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.4.
 2018-08-18 21:21:52 -04:00
Kei Kebreau
e1ecaa836f
gnu: xtensor: Update to 0.17.1. 
* gnu/packages/algebra.scm (xtensor): Update to 0.17.1.
[source]: Use git-fetch.
 2018-08-18 19:48:24 -04:00
Kei Kebreau
0bb41aec99
gnu: xtl: Update to 0.4.14. 
* gnu/packages/cpp.scm (xtl): Update to 0.4.14.
[source]: Use git-fetch.
 2018-08-18 19:48:18 -04:00