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127179 commits

Author SHA1 Message Date
Ricardo Wurmus
77491d9dc4
gnu: r-biocfilecache: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.10.1.

Change-Id: I5e71ba6fe180d64679b163b2863bd96fc1ca77ae
2023-11-03 22:49:23 +01:00
Ricardo Wurmus
6b18a2b370
gnu: r-arrmnormalization: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.42.0.

Change-Id: I54b1101547a4e360dd9e5a24425b42bad3cc77dd
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
f059ade231
gnu: r-progeny: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.24.0.

Change-Id: Ib4f1cfd6c92defe302bf07fe4b3ca4ac4df37fab
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
12a25de450
gnu: r-rbowtie2: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.8.0.

Change-Id: If97d5baf3dea63021e5f44c4bced43cd10070eda
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
cd3f0aa976
gnu: r-zfpkm: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.24.0.

Change-Id: I5decb580a3fcfe73ecedcfe0acb4f8a5410f9ac3
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
9cd71a55e8
gnu: r-zinbwave: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.24.0.

Change-Id: Ibf32bcbf8919363ff413f4abf96473179a4e9d55
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
3393f89fdc
gnu: r-webbioc: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.74.0.

Change-Id: I7fdd670151d5aa49b1a99bd5d6dd2c107db79c1f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
0c0d4e9d74
gnu: r-widgettools: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.80.0.

Change-Id: Iaa880fa331e4ddeec45ef36f68ab3e7e4003a046
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
e83637da77
gnu: r-wiggleplotr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.26.0.

Change-Id: I971b261e23b896e51618fa4a064152891ba8d03f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
bf2e150d5c
gnu: r-wrench: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.20.0.

Change-Id: Ia2597dfb17c6a04ac19253663fa50d0155a3c8e0
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
4464ee09a8
gnu: r-wppi: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.10.0.

Change-Id: Idbb7791b3fc6bd0beaaf2544ee1765ae4980f005
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
6ea628ec1c
gnu: r-xcms: Update to 4.0.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.0.
[propagated-inputs]: Add r-msexperiment, r-progress, and r-spectra.

Change-Id: Id2f96ef91565b64456d41fc49cd157a0bcb79967
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
c76e35ac50
gnu: r-massspecwavelet: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.68.0.

Change-Id: Ie5da6f03da44a85d16ecd610f7d935b460fc05ce
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
8bb88c275f
gnu: r-roar: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.38.0.

Change-Id: Ia5adaa7e12a1dfba8840aa95ebbabf2edbcd1525
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
385193c92b
gnu: r-yarn: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.28.0.

Change-Id: I2af46c89a04e0d5fa6e82ae8c366e731b4b0aa2f
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
92853c5e1a
gnu: r-quantro: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.36.0.

Change-Id: If092862e4c9b370b294809762523c93f87782758
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
a05f9cbab2
gnu: r-gcrma: Update to 2.74.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.74.0.

Change-Id: If9e27c7f36d132e71c24900cfaf052817510faea
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
8d91d64009
gnu: r-yapsa: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.28.0.

Change-Id: I5e3e4f3136a4a490cedb45b88d4879cfd210e249
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
d3550856ab
gnu: r-somaticsignatures: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.38.0.

Change-Id: If54820695dbbe0b8940f4f9b9e8e0bdd5268e0ed
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
5072f0664c
gnu: r-gtrellis: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.34.0.

Change-Id: Iab26e32c78943d713f889ccec1d1af863b9daa7e
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
0ba77ac5ae
gnu: r-yamss: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.28.0.

Change-Id: I7045aee52aeabb0605249f6da52dc362c4399d04
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
ec2cd3861c
gnu: r-ebimage: Update to 4.44.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.44.0.

Change-Id: If431ef62ecf9f710394d285fb15ebb52e4cab80c
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
23c25f0423
gnu: r-aucell: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.24.0.

Change-Id: Ic0f65a553dc0ea84db788621367815882b592b27
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
0eb64979aa
gnu: r-allelicimbalance: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.40.0.

Change-Id: I89a4410e142a0f00942765d98fa1a8ba27706c75
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
b107aaf47a
gnu: r-annotationtools: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.76.0.

Change-Id: I19bd7902041d29c1cd94e31a178259f51e6d4a25
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
29a09dbdef
gnu: r-gofuncr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.22.0.

Change-Id: Ic00366af82dd07fafe0483e37a9522f7a472ff6a
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
e632f73afc
gnu: r-atacseqqc: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.26.0.

Change-Id: I1023d6731c837dd64a232c73520e81a4389ee1a0
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
7fe9a89707
gnu: r-genomicscores: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.1.

Change-Id: I39d27518b7ccbc5511d3aeb12bc16436889ffb36
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
dea0576013
gnu: r-motifbreakr: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.16.0.

Change-Id: I89e726ac4e415a80afca1e415c355a94752b8a47
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
01612dd2a6
gnu: r-motifdb: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.44.0.

Change-Id: Iff85aa4dd21c45eac09920cb77400b934caa0988
2023-11-03 22:49:22 +01:00
Ricardo Wurmus
e4772226b3
gnu: r-rgadem: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.50.0.

Change-Id: Ie41481841a070484dec3beaa146deab99508c348
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
d9ba7e918e
gnu: r-bacon: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.30.0.

Change-Id: I31555dc9dc0502224543902c7b6eb364b9ce7b90
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
0282bb3aa6
gnu: r-abseqr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.20.0.

Change-Id: Id4fea6a81954388c46417e1de5ea5c3b54b60025
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
d478ba2bfb
gnu: r-a4: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.50.0.

Change-Id: I23de20743d631b3ef3b18707d1c3c1cae67108be
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
d69276f7e2
gnu: r-a4base: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.50.0.

Change-Id: I5c2ecfe6e888af18fced6571461b4278a1e188fe
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c6ad1d6186
gnu: r-a4reporting: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.50.0.

Change-Id: Ifb88020fcd8812937e1d4cf2d63f7e2141285c5a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c5a7e436a4
gnu: r-a4preproc: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.50.0.

Change-Id: I2b73b3e793131c8d07258bb5f3c0e1304f8b788f
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
b89491fcfb
gnu: r-a4classif: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.50.0.

Change-Id: Ib9624648a85cd945eeb4de4f78b1d3c214b3efc4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
17290efded
gnu: r-a4core: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.50.0.

Change-Id: I94addc286eca817db8220eaa83b69742c89f0b25
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
7e82848893
gnu: r-annaffy: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.74.0.

Change-Id: Ib9e106212783df75fbc03eea51d1c768720f0340
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
97a6b7b971
gnu: r-mlinterfaces: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.82.0.

Change-Id: I1c2812f02206e6026ca4b133f46bb45e45c5d827
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c7d59ff365
gnu: r-clusterexperiment: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.22.0.

Change-Id: I79d2df6fb405ec2870363fd9f63d6d72a3c17b5d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c112d7bdf0
gnu: r-clusterprofiler: Update to 4.10.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.0.
[propagated-inputs]: Add r-httr and r-igraph.

Change-Id: I87ea2a45b028483551ba936030f002d4bf1d97f0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
5342489b80
gnu: r-enrichplot: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.22.0.

Change-Id: I68187ecaeb0530cd5a6e8f80663a3428dd019f0a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
109a63f7b8
gnu: r-enrichedheatmap: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.32.0.

Change-Id: I9fb9f51ff7c386d0beaec6c1e5384b48c7a9a4ad
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
9dcb82f7e7
gnu: r-dose: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.28.0.
[propagated-inputs]: Add r-hpo-db and r-mpo-db.

Change-Id: I6c64242cf13cd30274024727571dc0ae7cbc0c94
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
77f4a907b3
gnu: r-fgsea: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.28.0.

Change-Id: I32e23fb87f56f9013fe0505c0068a70ce2afa371
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
7cca324d3b
gnu: r-fcscan: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.16.0.

Change-Id: I2ea797017fdca22b7aa08b26f5e8f7d9d75de5d5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
27dd42cc07
gnu: r-anota2seq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.24.0.

Change-Id: I2b0d13fee4644e88828d47562bd2bae5d290fbb3
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
520fc2a345
gnu: r-anota: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.50.0.

Change-Id: Ie9b856c11a181edbf6b7d349a7cdc67eb201dbd0
2023-11-03 22:49:21 +01:00