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Author SHA1 Message Date
Marius Bakke
ae0badf5bb
Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/admin.scm
	gnu/packages/commencement.scm
	gnu/packages/guile.scm
	gnu/packages/linux.scm
	gnu/packages/package-management.scm
	gnu/packages/pulseaudio.scm
	gnu/packages/web.scm
 2020-03-30 12:17:33 +02:00
Tobias Geerinckx-Rice
8c9dcdea0a
gnu: igraph: Update to 0.8.1. 
* gnu/packages/graph.scm (igraph): Update to 0.8.1.
 2020-03-29 01:24:10 +01:00
Marius Bakke
cfa6666921
gnu: mscgen: Fix build with gd >= 2.3.0. 
'gd' no longer provides 'libgd-config', so use 'pkg-config' instead.

* gnu/packages/graph.scm (mscgen)[native-inputs]: Add PKG-CONFIG.
 2020-03-27 15:16:22 +01:00
Ricardo Wurmus
d8dc2a7c1e
gnu: r-igraph: Update to 1.2.5. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
 2020-03-24 11:06:00 +01:00
Tobias Geerinckx-Rice
e85af13724
gnu: Update pypi.python.org home pages & use HTTPS. 
* gnu/packages/check.scm (python-unittest2, python-pytest-localserver)
(python-discover)[home-page]: Follow (HTTPS) redirections.
* gnu/packages/fontutils.scm (python2-defcon)[home-page]: Likewise.
* gnu/packages/glib.scm (python2-pygobject-2)[home-page]: Likewise.
* gnu/packages/graph.scm (python-igraph)[home-page]: Likewise.
* gnu/packages/graphviz.scm (xdot)[home-page]: Likewise.
* gnu/packages/pdf.scm (python-poppler-qt5)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-zope-event, python-zope-testing)
(python-zope-testrunner, python-zope-i18nmessageid, python-zope-schema)
(python-zope-configuration, python-zope-proxy, python-zope-location)
(python-zope-security))[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-setuptools,python-six)
(python2-dogtail, python2-enum, python-enum34, python-unidecode)
(python-numpydoc, python-decorator, python-drmaa, python-pathlib2)
(python-ly, python-msgpack, python-termcolor, python-colorama)
(python-pluggy, python2-pathlib2, python-rfc3987)[home-page]: Likewise.
 2020-03-04 21:30:57 +01:00
Ricardo Wurmus
7daae3c9d0
gnu: python-igraph: Update to 0.8.0. 
* gnu/packages/graph.scm (python-igraph): Update to 0.8.0.
[arguments]: Replace build phase; move check phase after install phase; pass
"--use-pkg-config" to avoid rebuilding igraph.
[propagated-inputs]: Add python-texttable.
[native-inputs]: Add python-pytest.
 2020-02-24 19:29:43 +01:00
Ricardo Wurmus
06b13f51f8
gnu: igraph: Update to 0.8.0. 
* gnu/packages/graph.scm (igraph): Update to 0.8.0.
 2020-02-24 19:29:43 +01:00
Alexander Krotov
56973172c9
gnu: Add mscgen. 
* gnu/packages/graph.scm (mscgen): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-02-11 12:19:27 -05:00
Tobias Geerinckx-Rice
99db6db7be
gnu: Use HTTPS for bioconductor.org. 
* gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked,
r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno,
r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise.
* gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
 2020-01-21 00:43:39 +01:00
Ricardo Wurmus
dbfce8ff5b
gnu: r-rgraphviz: Update to 2.30.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.30.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
312ec128af
gnu: python-pandas: Move to (gnu packages python-science). 
* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from
here...
* gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here.
* gnu/packages/benchmark.scm, gnu/packages/databases.scm,
gnu/packages/graph.scm, gnu/packages/parallel.scm,
gnu/packages/serialization.scm: Import (gnu packages python-science).
 2019-12-04 08:56:36 +01:00
Ricardo Wurmus
6fdf3d5d99
gnu: r-igraph: Update to 1.2.4.2. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.2.
 2019-11-28 10:03:20 +01:00
Marius Bakke
0fe041bd9f
gnu: Remove more GCC < 7 workarounds. 
* gnu/packages/abiword.scm (abiword)[arguments]: Do not pass "-std=c++11" to
the GCC command line.
* gnu/packages/aidc.scm (zbar)[arguments]: Likewise.
* gnu/packages/android.scm (android-libbase, android-libcutils,
android-libziparchive, fastboot)[arguments]: Likewise.
* gnu/packages/audio.scm (azr3, guitarix, suil)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[arguments]: Likewise.
* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Likewise.
* gnu/packages/code.scm (rtags)[arguments]: Likewise.
* gnu/packages/coq.scm (coq-gappa)[arguments]: Likewise.
* gnu/packages/emulators.scm (dolphin-emu)[arguments]: Likewise.
* gnu/packages/engineering.scm (xyce-serial, xyce-parallel)[arguments]: Likewise.
* gnu/packages/gnupg.scm (pinentry-qt)[arguments]: Likewise.
* gnu/packages/gobby.scm (libnet6, obby)[arguments]: Likewise.
* gnu/packages/graph.scm (python-faiss)[arguments]: Likewise.
* gnu/packages/graphics.scm (povray)[arguments]: Likewise.
* gnu/packages/image-processing.scm (opencv, itk-snap)[arguments]: Likewise.
* gnu/packages/image.scm (freeimage)[arguments]: Likewise.
* gnu/packages/kodi.scm (crossguid)[arguments]: Likewise.
* gnu/packages/music.scm (amsynth, qmidiarp, qmidiroute, seq24)[arguments]: Likewise.
* gnu/packages/pdf.scm (python-poppler-qt5)[arguments]: Likewise.
* gnu/packages/sagemath.scm (lcalc)[arguments]: Likewise.
* gnu/packages/video.scm (vlc, mlt, v4l-utils)[arguments]: Likewise.
 2019-10-20 14:00:12 +02:00
Ricardo Wurmus
17f3960f28
gnu: r-diffusionmap: Update to 1.2.0. 
* gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0.
 2019-09-14 00:37:46 +02:00
Andreas Enge
bf473f0ca0
gnu: Add rw. 
* gnu/packages/graph.scm (rw): New variable.
 2019-06-17 19:47:15 +02:00
Andreas Enge
f455d99dfa
gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module. 
* gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here...
* gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
 2019-06-17 19:47:15 +02:00
Ricardo Wurmus
e865e0b959
gnu: Add python-leidenalg. 
* gnu/packages/graph.scm (python-leidenalg): New variable.
 2019-05-16 16:07:06 +02:00
Ricardo Wurmus
52b4703c08
gnu: r-rgraphviz: Update to 2.28.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0.
 2019-05-06 00:14:29 +02:00
Ricardo Wurmus
a300ab685a
gnu: r-igraph: Update to 1.2.4.1. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.1.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus
6ee48091a4
gnu: Add python-louvain. 
* gnu/packages/graph.scm (python-louvain): New variable.
 2019-04-02 15:11:45 +02:00
Efraim Flashner
8339ccac5f
gnu: python-faiss: Fix building on non-Intel architectures. 
* gnu/packages/graph.scm (python-faiss)[arguments]: Adjust custom
'build-swig phase to change build flags for different archictures.
 2019-03-29 17:08:05 +03:00
Efraim Flashner
3776dc094c
gnu: faiss: Fix building on non-Intel architectures. 
* gnu/packages/graph.scm (faiss)[source]: Add snippet to wrap Intel
specific headers.
[arguments]: Adjust custom 'prepare-build phase to adjust compile flags
for different architectures.
 2019-03-29 17:08:02 +03:00
Ricardo Wurmus
51a9971ccb
gnu: Add python-faiss. 
* gnu/packages/graph.scm (python-faiss): New variable.
 2019-03-29 03:55:45 +01:00
Ricardo Wurmus
3e40318772
gnu: Add faiss. 
* gnu/packages/graph.scm (faiss): New variable.
 2019-03-29 03:55:45 +01:00
Ricardo Wurmus
f59cdeaf25
gnu: r-igraph: Update to 1.2.4. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus
44d10b1f72
gnu: Separate Python core packages from the rest. 
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
 2019-01-15 14:46:44 +01:00
Ricardo Wurmus
269182b0f1
gnu: r-rgraphviz: Update to 2.26.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
 2018-11-07 12:26:33 +01:00
Ricardo Wurmus
1a28b9ab55
gnu: python-plotly: Add python-pandas to inputs. 
* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
d53aeeafcc
Add missing use-modules clause. 
This is a follow-up to commit 5dfe491290.
Sorry!

* gnu/packages/bioinformatics.scm, gnu/packages/graph.scm: Use (gnu packages
bioconductor).
 2018-09-06 04:53:32 +02:00
Ricardo Wurmus
eb251fe524
gnu: r-igraph: Update to 1.2.2. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.2.
 2018-09-05 20:03:04 +02:00
Ricardo Wurmus
c273bcdfce
gnu: r-diffusionmap: Update to 1.1-0.1. 
* gnu/packages/graph.scm (r-diffusionmap): Update to 1.1-0.1.
 2018-09-05 20:03:04 +02:00
Ricardo Wurmus
7799a01ef1
gnu: r-rgraphviz: Update to 2.24.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
 2018-06-02 13:39:13 +02:00
Ricardo Wurmus
8cf7b28ffe
gnu: r-igraph: Update to 1.2.1. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.1.
[inputs]: Add glpk and zlib.
[propagated-inputs]: Remove r-irlba.
 2018-04-21 23:07:52 +02:00
Tobias Geerinckx-Rice
ef803aa52c
gnu: python-plotly: Update to 2.4.1. 
* gnu/packages/graph.scm (python-plotly): Update to 2.4.1.
 2018-03-27 03:26:46 +02:00
Tobias Geerinckx-Rice
d062957a87
gnu: Use HTTPS for r-project.org home pages. 
* gnu/packages/cran.scm (r-performanceanalytics, r-qap, r-gclus, r-leaps)
(r-splus2r, r-ifultools, r-sapa, r-quantmod, r-tseries, r-wmtsa, r-fractal)
(r-urca, r-trend, r-expm, r-complexplus, r-powerplus, r-signal, r-abind)
(r-prroc)[home-page]: Use HTTPS.
* gnu/packages/emacs.scm (emacs-ess)[home-page]: Likewise.
* gnu/packages/graph.scm (r-diffusionmap)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-minimal, r-quantreg)[home-page]: Likewise.
 2018-03-17 16:37:20 +01:00
Leo Famulari
5f3616d612
gnu: Add python-plotly. 
* gnu/packages/graph.scm (python-plotly, python2-plotly): New variables.
 2018-03-15 10:57:50 -04:00
Ricardo Wurmus
4e35c4290e
gnu: Add r-rbiofabric. 
* gnu/packages/graph.scm (r-rbiofabric): New variable.
 2018-03-02 22:23:18 +01:00
Ricardo Wurmus
fff9b88439
gnu: Add r-diffusionmap. 
* gnu/packages/graph.scm (r-diffusionmap): New variable.
 2017-12-18 12:01:35 +01:00
Ricardo Wurmus
8ca2b2b06e
gnu: r-rgraphviz: Update to 2.22.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.22.0.
 2017-11-07 08:15:27 +01:00
Ricardo Wurmus
e206de67b6
gnu: Add r-rgraphviz. 
* gnu/packages/graph.scm (r-rgraphviz): New variable.
 2017-10-22 12:12:42 +02:00
Ricardo Wurmus
1738138cb3
gnu: r-igraph: Move to (gnu packages graph). 
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
 2017-08-09 14:47:47 +02:00
Ricardo Wurmus
31476df32e
gnu: Add python-igraph. 
* gnu/packages/graph.scm (python-igraph): New variable.
 2017-08-09 14:47:47 +02:00
Ricardo Wurmus
e57fffad90
gnu: Add igraph. 
* gnu/packages/graph.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2017-08-09 14:47:47 +02:00