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Author SHA1 Message Date
Ricardo Wurmus
2320e76b82
gnu: sra-tools: Fix build on i686. 
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.
 2016-09-28 22:30:41 +02:00
Efraim Flashner
37042a0fb4
gnu: tilda: Update to 1.3.3. 
* gnu/packages/terminals.scm (tilda): Update to 1.3.3.
 2016-09-28 21:38:38 +03:00
Stefan Reichoer
1d51585573
gnu: Add xonsh. 
* gnu/packages/shells.scm (xonsh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-28 13:42:06 -04:00
Leo Famulari
b2fe918302
gnu: attic: Superseded by borg. 
* gnu/packages/backup.scm (attic)[properties]: New field.
 2016-09-28 13:07:06 -04:00
Taylan Ulrich Bayırlı/Kammer
415ee287fa
gnu: nestopia-ue: Update to version 1.47. 2016-09-28 17:00:35 +02:00
Taylan Ulrich Bayırlı/Kammer
dac65f90b6
gnu: higan: Update to version 101. 
* gnu/packages/games.scm (higan): Update to version 101.
 2016-09-28 17:00:12 +02:00
Thomas Danckaert
b411517a19
gnu: git: Add input perl-term-readkey for 'git-svn'. 
* gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys.
[arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-09-28 21:23:47 +08:00
David Craven
7a0630035c
gnu: linux-libre-beagle-bone-black: Remove kernel variant. 
linux-libre-beagle-bone-black is misslabeled. This kernel variant is
for the original beagle board.

* gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove.
 2016-09-28 12:40:12 +02:00
David Craven
e4e9c0a083
gnu: make-linux-libre: Install device tree files. 
* gnu/packages/linux.scm (make-linux-libre): Install device tree files.
 2016-09-28 12:40:12 +02:00
David Craven
50dbc03647
gnu: %default-extra-linux-options: Remove redundant options. 
* gnu/packages/linux.scm (%default-extra-linux-options): Remove
  redundant options.
 2016-09-28 12:40:12 +02:00
David Craven
33619c3ae0
gnu: Add sdcc. 
* gnu/packages/sdcc.scm (sdcc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-09-28 12:40:12 +02:00
David Craven
a3af70aca8
gnu: Add picocom. 
* gnu/packages/terminals.scm (picocom): New variable.
 2016-09-28 12:40:12 +02:00
Lukas Gradl
615c999055
gnu: opendht: Propagate msgpack. 
* gnu/packages/crypto.scm (opendht)[inputs]: Remove msgpack.
[propagated-inputs]: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-28 11:45:02 +02:00
Lukas Gradl
974aaf71e5
gnu: telephony: Add 'license:' prefix. 
* gnu/packages/telephony.scm (commoncpp) [license]: Add prefix.
(ucommon) [license]: Add prefix.
(ccrtp) [license]: Add prefix.
(osip) [license]: Add prefix.
(exosip) [license]: Add prefix.
(sipwitch) [license]: Add prefix.
(libsrtp) [license]: Add prefix.
(libiax2) [license]: Add prefix.
(seren) [license]: Add prefix.
(pjproject-sfl) [license]: Add prefix.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-28 11:25:34 +02:00
Lukas Gradl
9a4c032cc4
gnu: Add gsm. 
* gnu/packages/audio.scm (gsm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-28 11:14:42 +02:00
Lukas Gradl
89eb7581a4
gnu: Add dbus-c++. 
* gnu/packages/glib.scm (dbus-c++): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-09-28 11:08:33 +02:00
Leo Famulari
a7c9b062ad
gnu: libressl: Update to 2.5.0. 
* gnu/packages/tls.scm (libressl): Update to 2.5.0.
 2016-09-27 20:40:39 -04:00
Tobias Geerinckx-Rice
ffabdc185c
gnu: encfs: Update to 1.9.1. 
* gnu/packages/crypto.scm (encfs): Update to 1.9.1.
 2016-09-28 00:20:30 +02:00
Tobias Geerinckx-Rice
9da3c49837
gnu: btrfs-progs: Update to 4.7.3. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.7.3.
 2016-09-28 00:20:30 +02:00
Tobias Geerinckx-Rice
8c120e4f3b
gnu: zip: Use 'modify-phases'. 
* gnu/packages/zip.scm (zip)[arguments]: Use 'modify-phases'.
 2016-09-28 00:20:30 +02:00
Leo Famulari
8be2428e85
gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776]. 
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to 9.9.9-P3.
 2016-09-27 15:19:14 -04:00
Leo Famulari
cc132e0f38
gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776]. 
* gnu/packages/dns.scm (bind): Update to 9.10.4-P3.
 2016-09-27 15:19:14 -04:00
Stefan Reichoer
e8c9b01090
gnu: Add python-q. 
* gnu/packages/python.scm (python-q, python2-q): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 14:54:58 -04:00
Leo Famulari
b9bc6e8420
gnu: expat: Fix regression caused by fix for CVE-2016-0718. 
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 13:49:49 -04:00
Thomas Danckaert
32f70e1f86
gnu: Add gctp. 
* gnu/packages/maths.scm (gctp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 13:37:46 -04:00
ng0
3973e137f0
gnu: Add gloox. 
* gnu/packages/messaging.scm (gloox): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 13:31:18 -04:00
ng0
419fb3f1ac
gnu: femtolisp: Don't build on mips64el or armhf. 
* gnu/packages/lisp.scm (femtolisp)[supported-systems]: New field,
remove support for mips64el and armhf.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 12:29:35 -04:00
Andy Wingo
e9070933bf
gnu: Add gobby. 
* gnu/packages/gobby.scm (gobby): New variable.
 2016-09-27 14:46:10 +02:00
Andy Wingo
22a3cff3c8
gnu: Add obby. 
* gnu/packages/gobby.scm (obby): New variable.
 2016-09-27 14:46:10 +02:00
Andy Wingo
c8105e811b
gnu: Add libnet6. 
* gnu/packages/gobby.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
 2016-09-27 14:46:10 +02:00
Andy Wingo
b61d962723
gnu: Add libxml++-2. 
* gnu/packages/gnome.scm (libxml++-2): New variable.
 2016-09-27 14:46:10 +02:00
Andy Wingo
66329c23a1
gnu: New default Dovecot service postmaster_address 
* gnu/services/mail.scm (dovecot-configuration): Change default for
  postmaster-address, as dovecot is now requiring a non-empty value and
  will fail to start up otherwise.
* doc/guix.texi (Mail Services): Update.
 2016-09-27 14:45:07 +02:00
Efraim Flashner
a777535cd7
gnu: aria2: Update to 1.27.1. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
 2016-09-27 14:52:48 +03:00
Ben J Woodcroft
99caa6f75f
gnu: python-plastid: Update to 1.4.6. 
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
 2016-09-27 20:07:12 +10:00
Ben J Woodcroft
67f66812f5
gnu: Add python-termcolor. 
* gnu/packages/python.scm (python-termcolor, python2-termcolor): New
variables.
 2016-09-27 20:07:02 +10:00
Marius Bakke
f536dce522
gnu: python-pysam: Enable tests. 
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from
PyPi to source archive due to missing test data.
[arguments]: Add check phase after install.
[native-inputs]: Add python-nose, samtools and bcftools.
 2016-09-27 20:06:00 +10:00
Marius Bakke
dff26b2363
gnu: python-pysam: Delete bundled htslib. 
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet
to delete htslib.
[arguments]: Add htslib flags in 'set-flags phase.
[propagated-inputs]: New field. Add htslib.
 2016-09-27 20:06:00 +10:00
Marius Bakke
397d463a12
gnu: python-pysam: Use 'modify-phases'. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use
'modify-phases'.
 2016-09-27 20:06:00 +10:00
Marius Bakke
bdc7be59eb
gnu: Add bcftools. 
* gnu/packages/bioinformatics.scm (bcftools): New variable.
 2016-09-27 20:06:00 +10:00
Marius Bakke
e301bfc886
gnu: python2-pbcore: Update to 1.2.10. 
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
 2016-09-27 20:06:00 +10:00
Marius Bakke
c2efe1aea8
gnu: Add python-pyxb. 
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
 2016-09-27 20:06:00 +10:00
Marius Bakke
fd49eb213f
gnu: python-pysam: Update to 0.9.1.4. 
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
 2016-09-27 20:05:57 +10:00
Ludovic Courtès
3c185b24f5
Add missing exports. 
Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>.

* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
 2016-09-27 11:22:56 +02:00
Leo Famulari
9ad0965228
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309]. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
 2016-09-26 17:09:08 -04:00
Leo Famulari
8be42e5daf
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052]. 
* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
 2016-09-26 17:09:05 -04:00
Danny Milosavljevic
58478cc1cb
gnu: libftdi: Propagate the libusb input. 
* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-26 14:30:37 -04:00
Ricardo Wurmus
675d7ae26f
gnu: ncbi-vdb: Only build on i686 and x86_64. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
 2016-09-26 14:30:59 +02:00
Ricardo Wurmus
bc600b80a2
gnu: ghc-pandoc: Update to 1.17.2. 
* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
 2016-09-26 14:30:59 +02:00
Ricardo Wurmus
5a502d9abd
gnu: ghc-texmath: Update to 0.8.6.5. 
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
 2016-09-26 14:30:58 +02:00
Ricardo Wurmus
2e9b1276b7
gnu: ghc-cmark: Update to 0.5.3.1. 
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
 2016-09-26 14:30:58 +02:00