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Author SHA1 Message Date
Ricardo Wurmus
a98c6eccf8 gnu: orfm: Update to 0.4.1. 
* gnu/packages/bioinformatics.scm (orfm): Update to 0.4.1.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
2f6b3d2e7e gnu: python-scikit-learn: Use OpenBLAS instead of ATLAS. 
* gnu/packages/python.scm (python-scikit-learn)[inputs]: Replace "atlas" with
  "openblas".
* gnu/packages/python.scm (python-scikit-learn)[arguments]: Remove build phase
  'set-environment-variables, which is only needed when ATLAS is used.
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
719b01c157 gnu: python-scipy: Build with OpenBLAS and lapack. 
* gnu/packages/python.scm (python-scipy)[inputs]: Remove "atlas", add "lapack"
  and "openblas".
* gnu/packages/python.scm (python-scipy)[arguments]: Replace phase
  "set-environment-variables" with "configure-openblas".
 2015-06-15 10:36:42 +02:00
Ricardo Wurmus
cba256f8fa gnu: python-numpy-bootstrap: Add lapack to inputs. 
* gnu/packages/python.scm (python-numpy-bootstrap)[inputs]: Add lapack to
  inputs, because OpenBLAS does not include lapack functions.
 2015-06-15 10:36:41 +02:00
Ricardo Wurmus
2e189eb89f gnu: lv2: Update to 1.12.0. 
* gnu/packages/audio.scm (lv2): Update to 1.12.0.
 2015-06-15 08:07:37 +02:00
Ludovic Courtès
86d7043cad gnu: make-bootstrap: Update patching of gawk's configure. 
* gnu/packages/make-bootstrap.scm (%static-inputs)[gawk]: Change
  "-export-dynamic" to "-Wl,-export-dynamic" to account for current
  'configure' file.
 2015-06-15 00:09:25 +02:00
Ludovic Courtès
8dca238b15 gnu: make-bootstrap: Switch to GCC 4.9. 
* gnu/packages/make-bootstrap.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
  (%gcc-static): Add --disable-libcilkrts, --disable-libvtv,
  --disable-libbacktrace.
 2015-06-15 00:09:24 +02:00
Mark H Weaver
a0d385b052 gnu: screen: Update to 4.3.0. 
* gnu/packages/screen.scm (screen): Update to 4.3.0.
 2015-06-14 12:19:32 -04:00
Mark H Weaver
1a802c7ec2 gnu: openssl: Update to 1.0.2c. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2c.
 2015-06-14 08:49:50 -04:00
Mark H Weaver
bcf2971f6e Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/commencement.scm
	gnu/packages/xml.scm
 2015-06-14 08:49:42 -04:00
Ludovic Courtès
ec29907160 gnu: gcc: Build libsanitizer's bundled libbacktrace without -Werror. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: Also patch
  libsanitizer/libbacktrace/Makefile.in.
 2015-06-14 14:41:01 +02:00
Mark H Weaver
7871724df7 gnu: openssl: Update to 1.0.2b. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
 2015-06-13 23:01:07 -04:00
Mark H Weaver
0ad8f76f7f gnu: perl-net-ssleay: Disable test that fails with openssl-1.0.2b. 
* gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/openssl.scm (perl-net-ssleay): Add patch.
 2015-06-13 23:01:07 -04:00
Mark H Weaver
4c50e5ab3a gnu: python: Disable ssl test that fails with openssl-1.0.2b. 
* gnu/packages/patches/python-disable-ssl-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python): Add patch.
 2015-06-13 23:01:07 -04:00
Ludovic Courtès
b5616bc33d ld-wrapper: Ignore .so files specified after "-plugin" for RUNPATH purposes. 
Reported by Mark H Weaver
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20102#58>.

* gnu/packages/ld-wrapper.in (library-files-linked): Handle "-plugin"
  similarly to "-dynamic-linker".
 2015-06-14 01:00:27 +02:00
Ludovic Courtès
932e7204af gnu: guix: Wrap 'guix' so GUILE_LOAD_PATH includes the dependencies. 
* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Add
  'wrap-program' phase.
 2015-06-13 22:33:37 +02:00
Ludovic Courtès
02c2cf43ce gnu: guix: Use 'modify-phases'. 
* gnu/packages/package-management.scm (guix-0.8.2)[arguments]: Use
  'modify-phases' instead of 'alist-cons-before'.
 2015-06-13 22:33:37 +02:00
Eric Bavier
0061079a19 gnu: Add hydra. 
* gnu/packages/ci.scm: New file.
* gnu/packages/patches/hydra-automake-1.15.patch,
  gnu/packages/patches/hydra-disable-darcs-test.patch: New files.
* gnu-system.am (GNU_SYSTEM_MODULES): Add file.
  (dist_patch_DATA): Add patches.
 2015-06-13 08:05:01 -05:00
Eric Bavier
6e545bbf55 gnu: Add Catalyst-Authentication-Store-DBIx-Class. 
* gnu/packages/web.scm (perl-catalyst-authentication-store-dbix-class):
  New variable.
 2015-06-13 08:05:00 -05:00
Eric Bavier
514214cbe5 gnu: Add Catalyst-Plugin-Authorization-Roles. 
* gnu/packages/web.scm (perl-catalyst-plugin-authorization-roles): New
  variable.
 2015-06-13 08:05:00 -05:00
Eric Bavier
1937e38d06 gnu: Add Set-Object. 
* gnu/packages/perl.scm (perl-set-object): New variable.
 2015-06-13 08:05:00 -05:00
Ricardo Wurmus
8b9ec354ed gnu: Add powertabeditor. 
* gnu/packages/music.scm (powertabeditor): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
14a17ef6f4 gnu: catch-framework: Update to 1.1.3. 
* gnu/packages/check.scm (catch-framework): Update to 1.1.3.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
cc45cff83a gnu: Add rtmidi. 
* gnu/packages/audio.scm (rtmidi): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
6ce212b868 gnu: Add pugixml. 
* gnu/packages/xml.scm (pugixml): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
ccb8da2654 gnu: Add RapidJSON. 
* gnu/packages/web.scm (rapidjson): New variable.
 2015-06-12 23:01:33 +02:00
Ricardo Wurmus
76e146384c gnu: Add withershins. 
* gnu/packages/code.scm (withershins): New variable.
 2015-06-12 23:01:33 +02:00
Manolis Ragkousis
16cae799db gnu: patch: Set PATH_MAX for Hurd systems. 
* gnu/packages/patches/patch-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-12 15:46:25 +03:00
Ben Woodcroft
1e44cf8b0f gnu: Add OrfM. 
* gnu/packages/bioinformatics.scm (orfm): New variable.

Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
47da6268c4 gnu: icedtea7: Bootstrap with GCJ. 
* gnu/packages/java.scm (icedtea7): Bootstrap with GCJ rather than compile
  with IcedTea6.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
36742f4389 gnu: Add Couger. 
* gnu/packages/bioinformatics.scm (couger): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
0931c6091c gnu: Add randomjungle. 
* gnu/packages/machine-learning.scm (randomjungle): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
71f80f5487 gnu: Add python-libsvm. 
* gnu/packages/machine-learning.scm (python-libsvm): New variable.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
741115b649 gnu: Add libsvm. 
* gnu/packages/machine-learning.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-06-12 12:57:30 +02:00
Ricardo Wurmus
e0a02cb21f gnu: ngs-sdk: Update to version 1.1.1. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to version 1.1.1.
 2015-06-12 12:57:29 +02:00
Eric Bavier
48d21d6cd6 gnu: ghc: Patch runtime references to /bin/sh. 
* gnu/packages/haskell.scm (ghc)[arguments]: Rename
  'unpack-and-fix-testsuite' phase to 'unpack-testsuite-and-fix-bins'.
  Patch source files that reference /bin/sh.
 2015-06-11 18:55:49 -05:00
Mark H Weaver
dc7b1817f6 Revert "gnu: openssl: Update to 1.0.2b." 
This reverts commit 4f467e33de.
 2015-06-12 01:46:03 -04:00
Mark H Weaver
4f467e33de gnu: openssl: Update to 1.0.2b. 
* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
 2015-06-12 01:25:23 -04:00
Ludovic Courtès
e21adc768e gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to a43b55f.
  [source]: Add 'file-name' field.
  [native-inputs]: Add HELP2MAN.
 2015-06-11 23:33:32 +02:00
Ludovic Courtès
0004c5904c packages: Make 'location' field innate. 
* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
  'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
  Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
 2015-06-11 23:33:32 +02:00
Mark H Weaver
b45ce07a8a gnu: gnupg: Update to 2.1.5. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.5.
 2015-06-11 14:39:22 -04:00
宋文武
4510b2da3e gnu: Add librest. 
* gnu/packages/gnome.scm (librest): New variable.
 2015-06-11 23:30:54 +08:00
Mark H Weaver
8b1c8e4e27 gnu: inetutils: Update to 1.9.4. 
* gnu/packages/admin.scm (inetutils): Update to 1.9.4.
 2015-06-11 10:08:01 -04:00
Mark H Weaver
1492801655 Merge branch 'master' into core-updates 2015-06-10 17:50:27 -04:00
Mark H Weaver
1511e02355 gnu: nettle: Update to 3.1.1. 
* gnu/packages/nettle.scm (nettle): Update to 3.1.1.
 2015-06-10 17:49:11 -04:00
Mark H Weaver
70ca2e94d1 gnu: which: Update to 2.21. 
* gnu/packages/base.scm (which): Update to 2.21.
 2015-06-10 17:39:08 -04:00
Ludovic Courtès
2a1552c608 gnu: cross-base: Do not strip cross-gcc. 
Fixes a regression introduced in 9063ef0 whereby #:strip-binaries? would be
left to #t, leading to an invalid cross-built libgcc.a (see
<http://hydra.gnu.org/build/492479/nixlog/1/tail-reload>.)

* gnu/packages/cross-base.scm (cross-gcc-arguments): Add #:strip-binaries? #f
  unconditionally.  Replace 'install' phase to use "make install-strip".
 2015-06-10 23:19:30 +02:00
Mark H Weaver
3dbb0e5f8b gnu: qemu: Add fix for CVE-2015-3209. 
* gnu/packages/patches/qemu-CVE-2015-3209.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu): Add patch.
 2015-06-10 15:42:16 -04:00
Mark H Weaver
e51943f886 gnu: cups: Update to 2.0.3. 
* gnu/packages/cups.scm (cups): Update to 2.0.3.
 2015-06-10 14:50:28 -04:00
Mark H Weaver
63398a25ba gnu: linux-libre: Update to 4.0.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.0.5.
 2015-06-10 11:37:37 -04:00
Ludovic Courtès
ab999c2516 gnu: commencement: Remove "debug" output of GCC-FINAL. 
Fixes a regression introduced in 9063ef0.

* gnu/packages/commencement.scm (gcc-final)[outputs]: New field.
 2015-06-10 09:37:36 +02:00
Ludovic Courtès
d0b62698c9 gnu: gcc: Build libbacktrace without -Werror. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments] <pre-configure>: Remove -Werror
  from libbacktrace/configure.
 2015-06-09 22:32:15 +02:00
Ludovic Courtès
9063ef0f79 gnu: gcc: Add "debug" output, debugging symbols of libraries. 
* gnu/packages/gcc.scm (gcc-4.7)[install-target]: Remove.
  [outputs]: Add "debug".
  [arguments]: Remove #:strip-binaries?.  Remove 'install' phase.
 2015-06-09 22:32:15 +02:00
Ludovic Courtès
811974925d gnu: gcc: Do not add -rpath=LIBDIR/lib64 to the "lib" spec. 
* gnu/packages/gcc.scm (gcc-4.7): Remove unneeded LIBDIR/lib64 from
  GNU_USER_TARGET_LIB_SPEC.
 2015-06-09 22:32:15 +02:00
Ludovic Courtès
e58652502b gnu: make-bootstrap: Adjust gawk patch to 4.1.3. 
* gnu/packages/patches/gawk-shell.patch: Update for gawk 4.1.3.
 2015-06-09 22:32:15 +02:00
Manolis Ragkousis
30347caae7 gnu: guile-static: Use Linux syscalls only on Linux-based systems. 
* gnu/packages/patches/guile-linux-syscalls.patch: Use Linux
  syscalls only on Linux-based systems.
 2015-06-09 22:48:10 +03:00
宋文武
329d13b8ea gnu: mysql: Update to 5.6.25. 
* gnu/packages/databases.scm (mysql): Update to 5.6.25.
  [source]: Use 'version-major+minor'.
  [build-system]: Change to cmake-build-system.  Adjust arguments
  accordingly.
  [inputs]: Add libaio.  Remove procps.  Move perl to 'native-inputs'.
 2015-06-09 18:16:14 +08:00
Mark H Weaver
0705f79c6f gnu: Add proof-general. 
* gnu/packages/ocaml.scm (proof-general): New variable.
 2015-06-08 20:08:50 -04:00
Mark H Weaver
f8badf151b gnu: commencement: Use our Binutils as soon as possible. 
* gnu/packages/commencement.scm (binutils-boot0)[arguments]: Add
  'add-symlinks' phase.
 2015-06-08 16:14:03 -04:00
Manolis Ragkousis
56eba3d152 gnu: sed: Set PATH_MAX for Hurd systems. 
* gnu/packages/patches/sed-hurd-path-max.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-08 22:26:28 +03:00
Mark H Weaver
ae9b96c784 gnu: youtube-dl: Update to 2015.06.04.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.04.1.
 2015-06-08 15:07:30 -04:00
宋文武
c769cf9f2a gnu: evince: Update to 3.16.1, add more inputs. 
* gnu/packages/gnome.scm (evince): Update to 3.16.1.
  [inputs]: Add djvulibre, libtiff, gnome-desktop and libsecret.

Co-authored-by: David Hashe <david.hashe@dhashe.com>
 2015-06-08 20:42:31 +08:00
宋文武
faf713b9d0 gnu: geoclue: Update to 2.2.0. 
* gnu/packages/gnome.scm (geoclue): Update to 2.2.0.
 2015-06-08 18:02:28 +08:00
Ricardo Wurmus
dbdfe51598 gnu: python-numpy: Build against OpenBLAS. 
* gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of
  "atlas".
* gnu/packages/python.scm (python-numpy)[arguments]: Configure build against
  OpenBLAS.

Modified-By: Mark H Weaver <mhw@netris.org>
 2015-06-07 17:30:40 -04:00
Mark H Weaver
716e20a2bc gnu: icecat: Update to 31.7.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-0797.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2716.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.7.0-gnu1.  Remove patches.
 2015-06-06 08:02:45 -04:00
Mark H Weaver
8850303e76 gnu: tor: Update to 0.2.6.8. 
* gnu/packages/tor.scm (tor): Update to 0.2.6.8.
  [native-inputs]: Add python-2.
 2015-06-06 00:51:10 -04:00
Ludovic Courtès
97cc51f876 gnu: Add magit-svn. 
* gnu/packages/emacs.scm (magit-svn): New variable.
 2015-06-05 12:13:38 +02:00
Mark H Weaver
1973183b63 gnu: Add coq. 
* gnu/packages/ocaml.scm (coq): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver
d6b7b5edec gnu: Add hevea. 
* gnu/packages/ocaml.scm (hevea): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver
83f4dc36e2 gnu: Add camlp5. 
* gnu/packages/ocaml.scm (camlp5): New variable.
 2015-06-05 00:58:53 -04:00
Mark H Weaver
69b8f08cbd gnu: ocaml: Update to 4.02.1. 
* gnu/packages/ocaml.scm (ocaml)[version]: Update to 4.02.1.
  [source]: Use 'version-major+minor'.  Use .xz tarball.
  [home-page]: Update URI.
  [license]: gpl2 -> lgpl2.0.
  [inputs]: Add libx11, gcc:lib, and zlib.  Remove perl.
  [native-inputs]: New field, with perl and pkg-config.
  [arguments]: In #:modules, remove (srfi srfi-1), add (web server).  Use
  'modify-phases'.  Enable parallel build.  Add 'patch-/bin/sh-references' and
  'prepare-socket-test' phases.  Rename 'check-after-install' phase to
  'check'.  Use 'with-directory-excursion' in 'check' phase.  Remove unused
  keyword arguments from custom phases.
 2015-06-05 00:58:53 -04:00
宋文武
4a79e256f0 gnu: Add devhelp. 
* gnu/packages/gnome.scm (devhelp): New variable.
 2015-06-05 12:46:20 +08:00
宋文武
4becc79273 gnu: guile-opengl: Patch dynamic-link call for 'libGLU' to glu. 
* gnu/packages/gl.scm (guile-opengl)[inputs]: Add glu.
  [arguments]: Patch dynamic-link call for 'libGLU' to glu instead of
  mesa in the 'patch-dynamic-link' phase.
 2015-06-05 12:17:18 +08:00
Andreas Enge
16c62e1fc4 gnu: Add LibreOffice. 
* gnu/packages/libreoffice.scm (xmlsec-src-libreoffice, libreoffice):
  New variables.

Co-authored-by: John Darrington <jmd@gnu.org>
 2015-06-04 22:59:18 +02:00
Ludovic Courtès
8d866b96f7 gnu: Switch to GCC 4.9 as the default cross-compiler. 
* gnu/packages/cross-base.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
 2015-06-04 18:07:26 +02:00
Ludovic Courtès
de4ac32527 gnu: Switch to GCC 4.9 as the default compiler. 
* gnu/packages/commencement.scm: Replace all occurrences of "gcc-4.8" with
  "gcc-4.9".
  (gcc-boot0)[arguments]: Add --disable-libcilkrts --disable-libvtv.
 2015-06-04 18:05:52 +02:00
Ludovic Courtès
b15389e159 gnu: linux-libre-headers: Do not retain reference to the bootstrap tools. 
* gnu/packages/linux.scm (linux-libre-headers)[install-phase]: Remove
  ".install" files from the output.
  [arguments]: Add #:allowed-references.
 2015-06-04 14:37:53 +02:00
Ludovic Courtès
67dfa1986d gnu: findutils: Use /var as the localstatedir, for 'updatedb'. 
* gnu/packages/patches/findutils-localstatedir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (findutils)[source]: Use it.
  [arguments]: Pass --localstatedir=/var.
 2015-06-04 12:49:43 +02:00
Ludovic Courtès
696062b1f0 gnu: perl: Strip the DSOs. 
* gnu/packages/perl.scm (perl)[arguments]: Add 'make-shared-objects-writable'
  phase.
 2015-06-04 11:24:07 +02:00
Ludovic Courtès
f683d67d66 gnu: perl: Use 'modify-phases'. 
* gnu/packages/perl.scm (perl)[arguments]: Use 'modify-phases' instead of
  'alist-replace'.
 2015-06-04 11:18:59 +02:00
Ludovic Courtès
2068559ba0 gnu: gcc: Move patch upstream status in the patch itself. 
* gnu/packages/patches/gcc-arm-link-spec-fix.patch: Add bug and patch URLs.
* gnu/packages/gcc.scm (gcc-4.8): Remove them.
 2015-06-04 09:30:20 +02:00
Ludovic Courtès
946007f9ce gnu: gawk: Update to 4.1.3. 
* gnu/packages/gawk.scm (gawk): Update to 4.1.3.
 2015-06-04 08:58:23 +02:00
Ludovic Courtès
ad29c6f2e5 gnu: guile-reader: Update to 0.6.1. 
* gnu/packages/guile.scm (guile-reader)[source, version]: Update to 0.6.1.
  [arguments]: Remove #:locale argument.
 2015-06-03 11:47:36 +02:00
Ricardo Wurmus
c0b1909106 gnu: Add Data::Stag. 
* gnu/packages/perl.scm (perl-data-stag): New variable.
 2015-06-03 10:41:21 +02:00
Ricardo Wurmus
458ee7dcf0 gnu: Add IO::String. 
* gnu/packages/perl.scm (perl-io-string): New variable.
 2015-06-03 10:41:13 +02:00
Mark H Weaver
de8a1818fd gnu: gnupg-2.0: Update to 2.0.28. 
* gnu/packages/gnupg.scm (gnupg-2.0): Update to 2.0.28.
 2015-06-02 19:18:29 -04:00
Mark H Weaver
ed8a724b33 gnu: gnu-pw-mgr: Update to 1.4. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.4.  Use .xz tarball.
  Move 'which' to native-inputs.  Add 'autogen' to native-inputs.
 2015-06-02 15:43:34 -04:00
Mark H Weaver
9a59ce2455 gnu: sharutils: Update to 4.15.2. 
* gnu/packages/compression.scm (sharutils): Update to 4.15.2.
 2015-06-02 15:43:34 -04:00
Ricardo Wurmus
e7c097306d gnu: Add HTSlib. 
* gnu/packages/bioinformatics.scm (htslib): New variable.
 2015-06-02 14:30:14 +02:00
Ricardo Wurmus
132b4c8c23 gnu: ncbi-vdb: Use "i386" instead of "i686" in directory name. 
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Copy libraries from
  "linux/gcc/i386" directory instead of "linux/gcc/i686" when building on
  i686.
 2015-06-02 14:26:14 +02:00
Mark H Weaver
20a946664d gnu: flex: Fix native-inputs field. 
This is a followup to ba42199eb3 and dedaf76f66.

* gnu/packages/flex.scm (flex)[native-inputs]: Add another layer of
  parentheses.
 2015-05-31 21:18:54 -04:00
宋文武
7ce3224247 gnu: libxml2: Build python bindings separately. 
* gnu/packages/xml.scm (libxml2)[native-inputs]: Remove python.
  [arguments]: Remove.
  (python-libxml2, python2-libxml2): New variables.
 2015-06-01 08:59:22 +08:00
宋文武
10ac0f9f24 gnu: libxml2: Update to 2.9.2. 
* gnu/packages/xml.scm (libxml2): Update to 2.9.2.
 2015-06-01 08:59:15 +08:00
Christopher Allan Webber
93e7199b35 gnu: Add guile-gdbm-ffi. 
* gnu/packages/guile.scm (guile-gdbm-ffi): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2015-05-31 23:44:09 +02:00
Andreas Enge
c687f73110 gnu: avidemux: Add output lib dir to rpath. 
* gnu/packages/video.scm (avidemux): Set -DCMAKE_SHARED_LINKER_FLAGS
    in the call to cmake.
 2015-05-31 23:31:50 +02:00
Ludovic Courtès
97c15a297d gnu: tcsh: Add alternate URL for old tarballs. 
Reported by Alexander Vorobiev <alexander.vorobiev@gmail.com>.

* gnu/packages/tcsh.scm (tcsh)[source]: Add alternate URL.
 2015-05-31 22:39:48 +02:00
David Thompson
98b87b82be gnu: Add ruby-useragent. 
* gnu/packages/ruby.scm (ruby-useragent): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson
2cbc105bb3 gnu: Add bundler. 
* gnu/packages/ruby.scm (bundler): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson
d4fde1f239 gnu: Add ruby-rspec. 
* gnu/packages/ruby.scm (ruby-rspec): New variable.
 2015-05-29 20:05:57 -04:00
David Thompson
4f2a0cac7f gnu: Add ruby-rspec-mocks. 
* gnu/packages/ruby.scm (ruby-rspec-mocks): New variable.
 2015-05-29 20:05:57 -04:00