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Author SHA1 Message Date
Ben J Woodcroft
a522517cdb
gnu: diamond: Update to 0.9.9. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.9.
 2017-07-04 19:59:01 +10:00
Ben Woodcroft
18dea67dc3
gnu: blast+: Update to 2.6.0. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
[origin]: Remove bundled pcre.
[arguments]: Replace paths in run_with_lock.c.  Configure with pcre.
[inputs]: Add pcre, perl, python.
 2017-07-04 19:58:42 +10:00
Mark H Weaver
c24ea83cd7
gnu: linux-libre: Update to 4.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.11-i686.conf,
gnu/packages/aux-files/linux-libre/4.11-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.12-i686.conf,
gnu/packages/aux-files/linux-libre/4.12-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Update accordingly.
 2017-07-04 04:24:58 -04:00
Efraim Flashner
fdaf6cd345
gnu: qt: Update to 5.9.1. 
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras)
(qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors)
(qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel)
(qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2)
(qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d)
(qtcharts, qtdatavis3d, qtwebkit): Update to 5.9.1.
(qtwebkit)[source]: Change to official qt location.
 2017-07-04 08:55:00 +03:00
Marius Bakke
a8a964db83
gnu: python-pylint: Update to 1.7.2. 
* gnu/packages/python.scm (python-pylint): Update to 1.7.2.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
 2017-07-04 02:52:26 +02:00
Marius Bakke
de2f56cf96
gnu: python-astroid: Update to 1.5.3. 
* gnu/packages/python.scm (python-astroid): Update to 1.5.3.
[properties]: Declare python2 variant.
(python2-astroid)[propagated-inputs]: Add PYTHON2-BACKPORTS-FUNCTOOLS-LRU-CACHE,
PYTHON2-ENUM34 and PYTHON2-SINGLEDISPATCH.
 2017-07-04 02:52:26 +02:00
Marius Bakke
96bbc41f8b
gnu: python-pyopenssl: Update to 17.1.0. 
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.1.0.
[source]: Remove patch.
[native-inputs]: Add PYTHON-PRETEND.
[arguments]<#:phases>: Disable the network test here instead of via a patch.
Also disable one new test.
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-04 02:52:26 +02:00
Marius Bakke
89fc5b82d4
gnu: python-cryptography: Update to 1.9. 
* gnu/packages/python.scm (python-cryptography-vectors): Update to 1.9.
(python-cryptography): Update to 1.9.
[propagated-inputs]: Remove PYTHON-PACKAGING.
 2017-07-04 02:52:25 +02:00
Marius Bakke
029933cf79
gnu: python-cffi: Update to 1.10.0. 
* gnu/packages/python.scm (python-cffi): Update to 1.10.0.
[arguments]<#:phases>: Patch distutils.ccompiler call to use "gcc". Patch
another hard-coded cc invocation. Adjust `py.test` invocation per README.
 2017-07-04 02:52:25 +02:00
Marius Bakke
295f32f34b
gnu: python-cffi: Really enable tests. 
* gnu/packages/python.scm (python-cffi, python2-cffi)[arguments]: Replace
'check' phase with custom expression. Change to 'modify-phases' syntax.
 2017-07-04 02:52:25 +02:00
Marius Bakke
92d7e87c59
gnu: re2: Update to 2017-07-01. 
* gnu/packages/regex.scm (re2): Update to 2017-07-01.
 2017-07-04 02:52:25 +02:00
Tobias Geerinckx-Rice
f88eaccf19
gnu: ibus: Update to 1.5.16. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.16.
 2017-07-04 00:51:52 +02:00
Tobias Geerinckx-Rice
e97b75d997
gnu: cdogs-sdl: Update to 0.6.5. 
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.5.
[inputs]: Add mesa.
[home-page]: Use HTTPS.
 2017-07-04 00:51:52 +02:00
Tobias Geerinckx-Rice
e9e3a69d36
gnu: nnn: Update to 1.2. 
* gnu/packages/admin.scm (nnn): Update to 1.2.
 2017-07-04 00:51:52 +02:00
Kei Kebreau
910f1709a8
gnu: gcr: Correct patch. 
* gnu/packages/patches/gcr-disable-failing-tests.patch: Correct
erroneously committed file.

This is a follow-up to commit 85c774808f.
 2017-07-03 18:42:50 -04:00
Ludovic Courtès
d5ec5ed719
packages: Mark 'replacement' as an "innate" field. 
Suggested by Mark H Weaver
at <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00355.html>.

* guix/packages.scm (<package>)[replacement]: Mark as "innate".
* gnu/packages/base.scm (glibc-2.25-patched, glibc-2.24)
(glibc-2.23, glibc-2.22, glibc-2.21, glibc-locales): Remove
'replacement' field, which was set to #f.
* gnu/packages/commencement.scm (perl-boot0): Likewise.
* gnu/packages/fontutils.scm (graphite2/fixed): Likewise.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Likewise.
* gnu/packages/gnupg.scm (libgcrypt-1.7.8): Likewise.
* gnu/packages/guile.scm (guile-2.0/fixed, guile-2.2): Likewise.
* gnu/packages/icu4c.scm (icu4c/fixed): Likewise.
* gnu/packages/image.scm (libpng-apng): Likewise.
* gnu/packages/make-bootstrap.scm (%guile-static): Likewise.
* gnu/packages/pcre.scm (pcre/fixed): Likewise.
* gnu/packages/perl.scm (perl/fixed): Likewise.
* gnu/packages/ruby.scm (ruby-2.3, ruby-2.2, ruby-2.1)
(ruby-1.8): Likewise.
* gnu/packages/tls.scm (gnutls-3.5.13, gnutls/guile-2.2): Likewise.
* gnu/packages/xml.scm (expat-2.2.1): Likewise.
 2017-07-03 23:51:22 +02:00
Nicolas Goaziou
f6444059dd
gnu: wine: Add stable release. 
* gnu/packages/wine.scm (wine): Refer to stable release instead of development
  one.
(wine-next): New variable.
 2017-07-03 18:10:11 +02:00
Oleg Pykhalov
aadd75acd6
gnu: Add emacs-emamux. 
* gnu/packages/emacs.scm (emacs-emamux): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-07-03 22:34:40 +08:00
Kei Kebreau
85c774808f
gnu: gcr: Enable working tests. 
* gnu/packages/patches/gcr-disable-failing-tests.patch,
gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add patches.
* gnu/packages/gnome.scm (gcr)[source]: Use patches.
[arguments]: Enable tests.
 2017-07-03 09:52:59 -04:00
宋文武
1ec0c1f30e
gnu: xfce: Propagate search paths of 'xfce4-panel'. 
* gnu/packages/xfce.scm (xfce)[native-search-paths]: New field.
 2017-07-03 19:27:56 +08:00
Roel Janssen
fd2d17cdae
gnu: Add emacs-sparql-mode. 
* gnu/packages/emacs.scm (emacs-sparql-mode): New variable.
 2017-07-03 13:02:07 +02:00
Ludovic Courtès
1b0f266e40
gnu: Switch guile-cairo and dependents to Guile 2.2 again. 
Fixes <https://bugs.gnu.org/27551>.
Reported by Leo Famulari <leo@famulari.name>.

This reinstates the following commits:

  e3ddb1e83 * gnu: guile-cairo: Switch to Guile 2.2.
  ae5c6ef39 * gnu: guile-gnome: Update to 2.16.5.
  0fd8013fc * gnu: guile-rsvg: Update to commit 05c6a2fd.
  66b9183c4 * gnu: guile-lib: Switch to Guile 2.2.

and adds the following changes:

* gnu/bootloader/grub.scm (svg->png): Add 'package->derivation' call for
GUILE-2.2.  Pass #:guile-for-build to 'gexp->derivation'.
* gnu/build/svg.scm (svg->png): Add 'em' and 'ex' to the 'let-values'
form to account for all the values returned by
'rsvg-handle-get-dimensions', which Guile 2.2 does not truncate.
 2017-07-02 22:52:30 +02:00
Theodoros Foradis
61f81618a8
gnu: Add toxic. 
* gnu/packages/messaging.scm (toxic): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-02 22:52:27 +02:00
Alex Kost
3fb8e281b7
gnu: emacs-guix: Update to 0.3.2. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.3.2.
[arguments]: Add '--with-guix-site-ccache-dir' configure flag, as Guix
installs its .go files separately nowadays.
 2017-07-02 20:45:18 +03:00
Leo Famulari
f277dea2e2
gnu: beets: Update to 1.4.5. 
* gnu/packages/music.scm (beets): Update to 1.4.5.
 2017-07-02 11:35:04 -04:00
Leo Famulari
e00a59097e
gnu: python-vobject: Update to 0.9.5. 
* gnu/packages/python.scm (python-vobject, python2-vobject): Update to 0.9.5.
 2017-07-02 09:17:20 -04:00
Leo Famulari
477aa33400
gnu: vdirsyncer: Update to 0.16.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.0.
[license]: Change to bsd-3.
 2017-07-02 09:17:16 -04:00
Efraim Flashner
bfba12695a
gnu: ovmf: Fix build on x86_64. 
This is a follow-up to 2eb95ade8f.

* gnu/packages/firmware.scm (ovmf)[arguments]: Fix the syntax used when
following the x86_64 fork of the arguments.
 2017-07-02 13:13:35 +03:00
Efraim Flashner
dd78efe39a
gnu: font-google-noto: Update to 20170403. 
* gnu/packages/fonts.scm (font-google-noto): Update to 20170403.
[source]: Update source uri.
 2017-07-01 23:45:20 +03:00
Efraim Flashner
fc19cee18c
gnu: font-gnu-unifont: Update to 10.0.03. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.03.
[properties]: Add 'upstream-name' to ease updates.
 2017-07-01 23:45:19 +03:00
Leo Famulari
5ace0919c2
Revert "gnu: guile-lib: Switch to Guile 2.2." 
This reverts commit 66b9183c4f.
 2017-07-01 16:08:47 -04:00
Leo Famulari
6b820ef15d
Revert "gnu: guile-rsvg: Update to commit 05c6a2fd." 
This reverts commit 0fd8013fca.
 2017-07-01 16:08:47 -04:00
Leo Famulari
5e1f9b3042
Revert "gnu: guile-gnome: Update to 2.16.5." 
This reverts commit ae5c6ef393.
 2017-07-01 16:08:47 -04:00
Leo Famulari
f3bb868a71
Revert "gnu: guile-cairo: Switch to Guile 2.2." 
This commit caused the build of grub-image.png to fail, prevent the
build of grub.cfg and reconfiguring of GuixSD:

<https://bugs.gnu.org/27551>

This reverts commit e3ddb1e832.
 2017-07-01 16:08:47 -04:00
Leo Famulari
dc03f32dea
gnu: guile-git: Update source URL. 
* gnu/packages/guile.scm (guile-git)[source]: Update URL.
 2017-07-01 15:25:21 -04:00
Ben Woodcroft
ba773f65f0
gnu: cd-hit: Update to 4.6.8. 
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.8.
 2017-07-01 10:49:37 +10:00
Ben Woodcroft
fd99d95b3f
gnu: bwa: Update to 0.7.15. 
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.15.
 2017-07-01 09:48:20 +10:00
Tobias Geerinckx-Rice
97d451540c
gnu: btrfs-progs: Update to 4.11.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.11.1.
 2017-07-01 01:23:41 +02:00
Tobias Geerinckx-Rice
0c7ce625b7
gnu: tor: Update to 0.3.0.9 [fixes CVE-2017-0377]. 
* gnu/packages/tor.scm (tor): Update to 0.3.0.9.
 2017-07-01 00:20:53 +02:00
Feng Shu
f4ade9b6c8
gnu: Add emacs-exwm-x. 
* gnu/packages/emacs.scm (emacs-exwm-x): New variable.
 2017-06-30 23:30:31 +02:00
Feng Shu
58addd2b20
gnu: Add emacs-switch-window. 
* gnu/packages/emacs.scm (emacs-switch-window): New variable.
 2017-06-30 23:30:31 +02:00
Ludovic Courtès
e3ddb1e832
gnu: guile-cairo: Switch to Guile 2.2. 
This patch adjusts dependent packages accordingly.

* gnu/packages/gtk.scm (guile-cairo)[inputs]: Switch to GUILE-2.2 and
GUILE-LIB.
(guile-rsvg)[inputs]: Likewise.
(guile-present)[inputs]: Likewise.
(guile-gnome)[inputs]: Likewise.
* gnu/packages/plotutils.scm (guile-charting)[inputs]: Switch go
GUILE-2.2.
 2017-06-30 23:20:34 +02:00
Ludovic Courtès
ae5c6ef393
gnu: guile-gnome: Update to 2.16.5. 
* gnu/packages/gtk.scm (guile-gnome): Update to 2.16.5.
[arguments] <pre-configure>: Use @GUILE_EFFECTIVE_VERSION@ instead of
"2.0".
[properties]: New field.
 2017-06-30 23:20:34 +02:00
Ludovic Courtès
0fd8013fca
gnu: guile-rsvg: Update to commit 05c6a2fd. 
* gnu/packages/gtk.scm (guile-rsvg): Update to commit 05c6a2fd.
[source](url): Change to gitlab.com.
(snippet): Use @GUILE_EFFECTIVE_VERSION@ instead of "2.0".
* gnu/packages/patches/guile-rsvg-pkgconfig.patch: Use
"$GUILE_EFFECTIVE_VERSION" instead of "2.0".
 2017-06-30 23:20:34 +02:00
Ludovic Courtès
66b9183c4f
gnu: guile-lib: Switch to Guile 2.2. 
* gnu/packages/guile.scm (guile-lib)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
(guile2.0-lib): New variable.
(guile2.2-lib): Mark as deprecated.
* gnu/packages/guile.scm (guile-ics): Use GUILE2.0-LIB.
* gnu/packages/gtk.scm (guile-cairo, guile-rsvg)
(guile-present, guile-gnome): Likewise.
* gnu/packages/skribilo.scm (skribilo): Likewise.
 2017-06-30 23:20:33 +02:00
Ludovic Courtès
30f17d73d6
gnu: guile-lib: Update to 0.2.5.1. 
* gnu/packages/guile.scm (guile-lib): Update to 0.2.5.1.
 2017-06-30 23:20:33 +02:00
Leo Famulari
f48a9d4a46
gnu: npth: Update to 1.5. 
* gnu/packages/gnupg.scm (npth): Update to 1.5.
 2017-06-30 16:54:05 -04:00
Leo Famulari
9570b01631
gnu: libreoffice: Update to 5.3.2.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.2.2.
 2017-06-30 16:11:45 -04:00
Ludovic Courtès
798b7678a0
gnu: hwloc: Add "lib" and "debug" outputs. 
* gnu/packages/mpi.scm (hwloc)[outputs]: New field.
[arguments]: Add 'avoid-circular-references' phase.
(openmpi)[inputs]: Use the "lib" output of HWLOC.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
 2017-06-30 18:44:41 +02:00
Ludovic Courtès
7eb9f31cd9
gnu: hwloc: Use /var as the localstatedir. 
* gnu/packages/mpi.scm (hwloc)[arguments]: Add #:configure-flags.
 2017-06-30 18:44:41 +02:00