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Author SHA1 Message Date
Ricardo Wurmus
eaef954d65
gnu: r-imager: Update to 0.45.8. 
* gnu/packages/cran.scm (r-imager): Update to 0.45.8.

Change-Id: I5c3e2852d8136e77eec9810414623558cd01b7d8
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus
3bbc870b61
gnu: r-ggforce: Update to 0.4.2. 
* gnu/packages/cran.scm (r-ggforce): Update to 0.4.2.

Change-Id: I619d7f55d43b8b4320f5162602e1a00fd5df8d5e
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus
cca2bc4441
gnu: r-usethis: Update to 2.2.3. 
* gnu/packages/cran.scm (r-usethis): Update to 2.2.3.

Change-Id: I69d069d6f068ac8a747d9d623b1c3e425046e730
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus
81043e9f5a
gnu: r-acdm: Update to 1.0.4.3. 
* gnu/packages/cran.scm (r-acdm): Update to 1.0.4.3.

Change-Id: I6d22b039eea1f7947189fb141660901a75aa06b3
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus
04208d8bfb
gnu: r-circlize: Update to 0.4.16. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.16.

Change-Id: Ic5f5f14c0b7abf8c20e06c127797c2cf02893bc8
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus
a66b3db343
gnu: r-callr: Update to 3.7.5. 
* gnu/packages/cran.scm (r-callr): Update to 3.7.5.

Change-Id: I0af56ae805e8a2fe7c0bd975bd25c65b136df249
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus
3b5eb77819
gnu: r-ggvenndiagram: Update to 1.5.2. 
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.5.2.

Change-Id: Id534fc82a43c3d88eaba708977626151d26385b4
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus
601c25be01
gnu: r-boot: Update to 1.3-29. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-29.

Change-Id: Ia0e1c2da6c4cbae22466b4778309afaddf5a257b
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus
c3a8d20567
gnu: r-estimability: Update to 1.5. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.5.
[native-inputs]: Add r-knitr.
[description]: Use complete sentence.

Change-Id: I9ed956ca7527a2316667813465bdb2bb47ebd516
 2024-02-20 20:20:55 +01:00
Ricardo Wurmus
c35e55a7ee
gnu: r-dt: Update to 0.32. 
* gnu/packages/statistics.scm (r-dt): Update to 0.32.

Change-Id: I231ecc8a9606a8404f1bb5fccbcd5153d9cc7f7d
 2024-02-20 20:20:55 +01:00
Wilko Meyer
877abbdae7
gnu: linux-libre 6.7: Modify .conf files. 
* gnu/packages/aux-files/linux-libre/6.7-arm.conf,
  gnu/packages/aux-files/linux-libre/6.7-arm64.conf: Add platform support.

Change-Id: I90dee088ab11a31cb526b396d675e7bc22d67297
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-02-20 11:57:09 -05:00
Wilko Meyer
d51ac34105
gnu: linux-libre 6.1: Update to 6.1.78. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.78.
  (linux-libre-6.1-pristine-source): Update hash.

Change-Id: I1293b6494fa26f2c786d8cbabe6c855610eca499
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-02-20 11:57:09 -05:00
Wilko Meyer
a673109d08
gnu: linux-libre 6.6: Update to 6.6.17. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.17.
  (linux-libre-6.6-pristine-source): Update hashes.

Change-Id: I911c604ff188f80068ec49edaa8df5aab00439a7
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-02-20 11:57:08 -05:00
Wilko Meyer
dc9ec00923
gnu: linux-libre 6.7: Update to 6.7.5. 
* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.5.
  (linux-libre-6.7-pristine-source): Update hashes.

Change-Id: I29490cd45a43a960b380a23cfb810494ea238691
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-02-20 11:57:05 -05:00
Mark H Weaver
3d061d9677
gnu: icecat: Update to 115.8.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2024-1546, CVE-2024-1547, CVE-2024-1548,
CVE-2024-1549, CVE-2024-1550, CVE-2024-1551, CVE-2024-1552, and
CVE-2024-1553.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2024-02-20 09:42:41 -05:00
Tomás Ortín
ffcce77ec4
gnu: Add rdfind. 
* gnu/packages/admin.scm (rdfind): New variable.

Change-Id: Ie25bb6b8f5f9a3942eec8d9346da99d73e3bf1dd
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-20 10:57:17 +01:00
Nicolas Graves
a2eaa97637
gnu: Add font-libre-franklin. 
* gnu/packages/fonts.scm (font-libre-franklin): New variable.

Change-Id: I4732b76b74be861d5c7b071a4f562373664e8282
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-20 10:57:17 +01:00
Ludovic Courtès
34c79c6ae8
syscalls: ‘processes’ really omits kernel threads. 
Fixes a bug whereby ‘processes’ would include kernel threads, thereby
leading the ‘stop’ method of ‘user-processes’ to wait indefinitely for a
kernel thread.  Code taken from the Shepherd.

Fixes <https://issues.guix.gnu.org/68800>.

* guix/build/syscalls.scm (kernel?): Remove.
(linux-process-flags, linux-kernel-thread?, pseudo-process?): New
procedures.
(PF_KTHREAD): New variable.
(processes): Use ‘pseudo-process?’ instead of ‘kernel?’.

Reported-by: Tomas Volf <~@wolfsden.cz>
Change-Id: I8c439cdaf868a8f899de7fe500ce8bf10e5fc290
 2024-02-20 10:57:16 +01:00
Robby Zambito
5d81aa8613
gnu: alsa-scarlett-gui: Wrap with GSETTINGS_SCHEMA_DIR. 
* gnu/packages/music.scm (alsa-scarlett-gui)[arguments]: Wrap with
GSETTINGS_SCHEMA_DIR.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-20 10:57:16 +01:00
Ludovic Courtès
96ae7b2e33
doc: Augment ‘whoogle-service-type’ intro. 
* doc/guix.texi (Whoogle Search): Enrich a bit.

Change-Id: Ib7e1da1c0709167d02c43ab991f3ae34fbc09c84
 2024-02-20 10:57:16 +01:00
Miguel Ángel Moreno
0a7bf792c8
services: Add whoogle-service-type. 
* gnu/services/web.scm (whoogle-service-type): New variable.
* doc/guix.texi (Web Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-02-20 10:57:16 +01:00
Ricardo Wurmus
0497b1696f
gnu: Add r-cetcolor. 
* gnu/packages/cran.scm (r-cetcolor): New variable.

Change-Id: I8af11a4449229d736fba05c5d6af5c096aa7a11a
 2024-02-20 10:55:32 +01:00
Ricardo Wurmus
7a01cc001d
import/cran: Use downstream name when using specifications. 
Reported by Alexander Blume at
<https://github.com/BIMSBbioinfo/guix.install/issues/4>.

* guix/import/cran.scm (format-inputs): Use UPSTREAM-INPUT-DOWNSTREAM-NAME
when %INPUT-STYLE is set to 'SPECIFICATION.

Change-Id: I2f0963af197896aafd613b253d8712e41a716e52
 2024-02-20 10:32:24 +01:00
Ricardo Wurmus
2e656d674c
gnu: python-pyega3: Define as deprecated alias for python-ega-download-client. 
* gnu/packages/bioinformatics.scm (python-pyega3): Define as deprecated alias
for python-ega-download-client.
(python-ega-download-client)[description]: Merge with contents from
python-pyega3.

Change-Id: Ic7f4d0cf49cedaca78035dca95b48d317307084d
 2024-02-20 09:41:01 +01:00
nafkhamdc
312a479f8f
gnu: python-ega-download-client: Disable some tests. 
* gnu/packages/bioinformatics.scm (python-ega-download-client)[arguments]:
Disable tests that fail on big machines; use "--ignore" where appropriate.

Change-Id: I010c3a0e7cb69184b72e8b13bad04ff2fd364f5a
 2024-02-20 08:45:39 +01:00
Ricardo Wurmus
f0c839eb8a
gnu: Add sugar-physics-activity. 
* gnu/packages/sugar.scm (sugar-physics-activity): New variable.

Change-Id: Ic6b3da1a5ffe0ae177fa6b502d4ab34e84bbf082
 2024-02-20 08:45:39 +01:00
Ricardo Wurmus
23f89717e4
gnu: python-pygame: Update to 2.5.2. 
* gnu/packages/game-development.scm (python-pygame): Update to 2.5.2.

Change-Id: I8fc18627b16ff7e7aeeb84fdb2fdb82593e6ddb7
 2024-02-20 08:45:39 +01:00
Ahmad Draidi
2a90ce896f
gnu: labwc: Update to 0.7.0. 
* gnu/packages/wm.scm (labwc): Update to 0.7.0.

Change-Id: I35f7faf2ba3975481780b49d0dcdef6f39af46bc
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
 2024-02-19 22:21:32 -05:00
Ahmad Draidi
b4148713d1
gnu: Update wlroots to 0.17.1. 
Keep the older version as wlroots-0.16 since a few packages break without it.

* gnu/packages/wm.scm (wlroots): Update to 0.17.1.
[source]: Add patch.
[propagated-inputs]: Add libdisplay-info.
* gnu/packages/patches/wlroots-hwdata-fallback.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/wm.scm (wlroots-0.16): New variable.
* gnu/packages/wm.scm (cage)[inputs]: Replace wlroots with wlroots-0.16.
* gnu/packages/wm.scm (fnott)[inputs]: Likewise.
* gnu/packages/wm.scm (dwl)[inputs]: Likewise.
* gnu/packages/wm.scm (sway)[inputs]: Likewise.
* gnu/packages/wm.scm (cagebreak)[inputs]: Likewise.
* gnu/packages/wm.scm (hikari)[inputs]: Likewise.
* gnu/packages/wm.scm (river)[native-inputs]: Likewise.

Change-Id: Ib3d3938d6486fb1674380811a6dc0a512c991ac7
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
 2024-02-19 22:19:44 -05:00
Sharlatan Hellseher
193a01d73f
gnu: chezmoi: Update to 1.8.10. 
* gnu/packages/configuration-management.scm (chezmoi): Update to 1.8.10.
[arguments] <#:phases>: Add 'remove-failing-test-scripts phase, deleting
testdata scripts requiring additional programs.
[native-inputs]: Remove go-github-com-bmatcuk-doublestar and
go-github-com-google-go-github; add
go-github-com-bmatcuk-doublestar-v2,
go-github-com-google-go-github-v33, and go-golang-org-x-term.

Change-Id: Ia0b9b7e4dd00e99bc8150816c46b456cc272b25c
 2024-02-19 23:32:34 +00:00
Sharlatan Hellseher
ac79a4a8e6
gnu: chezmoi: Sort inputs alphabetically. 
* gnu/packages/configuration-management.scm (chezmoi) [native-inputs]:
Sort alphabetically to ease maintenance.

Change-Id: I22b82ce7163db696c4d9e8484fbe72da086a4139
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
963e2e9bb6
gnu: Add go-github-com-google-go-github-v33. 
* gnu/packages/golang-web.scm (go-github-com-google-go-github-v33): New variable.

Change-Id: Ifafa71ea78b2b430f5f907912038bb03333126cf
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
eee292979a
gnu: Add go-github-com-bmatcuk-doublestar-v2. 
* gnu/packages/golang.scm (go-github-com-bmatcuk-doublestar-v2): New variable.

Change-Id: I56d5588a1741a8e6c86320ec07bc86805f34fc91
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
de55f21460
gnu: go-github-go-git: Adjust imports. 
* gnu/packages/version-control.scm (go-github-go-git) [native-inputs]:
Move go-github-com-alcortesm-tgz, go-github-com-emirpasic-gods,
go-github-com-go-git-gcfg, go-github-com-go-git-go-billy,
go-github-com-go-git-go-git-fixtures, go-github-com-imdario-mergo,
go-github-com-jbenet-go-context, go-github-com-kevinburke-ssh-config,
go-github-com-mitchellh-go-homedir, go-github-com-sergi-go-diff,
go-github-com-xanzy-ssh-agent, go-golang-org-x-crypto,
go-golang-org-x-net, go-golang-org-x-text, go-gopkg-in-check-v1 and
go-gopkg-in-warnings from here ...
[propagated-inputs]: ... to here.

Change-Id: I9c16fe28dcbbaf7c53e201625f56a04bceb21fcb
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
d3d87b93d2
gnu: go-github-go-git: Remove labels. 
* gnu/packages/version-control.scm (go-github-go-git) [native-inputs]:
Remove labels.

Change-Id: Icf5eb3902a520e8f1306d72c7cbc533ff45d8cf4
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
bd511903de
gnu: ghq: Fix build. 
Fix build as seen in <https://ci.guix.gnu.org/build/3490264/details>.

* gnu/packages/version-control.scm (ghq): Use G-expressions.
[arguments] <#:go>: Use go-1.21.
<#:phases>: Remove trailing #t from lambda.

Change-Id: Ifb1e133a2570dcd04212ef43b46c8b41c3507c88
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
f5050fb019
gnu: ghq: Remove package labels. 
* gnu/packages/version-control.scm (ghq): Remove labels.

Change-Id: Icc4b951bac4a1187c5d83a8309753d1dd842273a
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
92b5c13c6a
gnu: go-github-com-songmu-gitconfig: Fix build. 
As seen in <https://ci.guix.gnu.org/build/3490304/log/raw>.

* gnu/packages/golang-xyz.scm go-github-com-songmu-gitconfig: Update
style.
[arguments] <#:go>: Use go-1.21.

Change-Id: Iea7a32b51d4bd74e99c52938307c11177ae79199
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
efa4809384
gnu: go-github-com-songmu-gitconfig: Move to golang-xyz. 
* gnu/packages/golang.scm (go-github-com-songmu-gitconfig): Move from
here ...
* gnu/packages/golang-xyz.scm: ... to here.

* gnu/packages/version-control.scm: Add (gnu packages golang-xyx)
module.

Change-Id: Ibab2595d981d46096501bb8ab495e899d2aacf7d
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
dca16f4e1f
gnu: go-github-com-alecthomas-assert-v2: Update to 2.5.0. 
* gnu/packages/golang-check.scm (go-github-com-alecthomas-assert-v2): Update to 2.5.0.

Change-Id: Ie0a1ad0488b499092437ce56f9df83d90d1be1e9
 2024-02-19 23:32:33 +00:00
Sharlatan Hellseher
ce3394edde
gnu: go-github-com-alecthomas-assert: Depricate package. 
The package go-github-com-alecthomas-assert is succeeded by
go-github-com-alecthomas-assert-v2 not in use by any others and
failed to build, see <https://ci.guix.gnu.org/build/3490314/log/raw>.

* gnu/packages/golang-check.scm (go-github-com-alecthomas-assert):
Remove variable.

Change-Id: Ia3f7b039c4de9b1b2956f0bfc2629d791aa9cf5a
 2024-02-19 23:32:32 +00:00
Sharlatan Hellseher
5890d3b70f
gnu: Add go-github-com-alecthomas-chroma-v2. 
* gnu/packages/golang-xyz.scm (go-github-com-alecthomas-chroma-v2): New variable.

Change-Id: I883a1ca1a84fd35cf0d7fe946fd1caedafae3842
 2024-02-19 23:32:32 +00:00
Sharlatan Hellseher
18f44da03b
gnu: go-github-com-alecthomas-chroma: Remove bundled files. 
* gnu/packages/golang-xyz.scm (go-github-com-alecthomas-chroma)
[source]: Remove git submodules and generated files.

Change-Id: Idafee9723b837495084aa0cd2fb454a953ff6233
 2024-02-19 23:32:32 +00:00
Sharlatan Hellseher
73eb26cbd7
gnu: go-github-com-alecthomas-chroma: Update to 0.10.0. 
* gnu/packages/golang-xyz.scm (go-github-com-alecthomas-chroma): Update to 0.10.0.
[native-inputs]: Remove go-github-com-alecthomas-assert,
go-github-com-alecthomas-colour, go-github-com-alecthomas-repr,
go-github-com-mattn-go-isatty, and go-github-com-sergi-go-diff; add
go-github-com-stretchr-testify.

Change-Id: I9d72bbdeb97a3c94545ff08d356c5e568fe173c6
 2024-02-19 23:32:32 +00:00
Sharlatan Hellseher
ee79286031
gnu: go-github-com-alecthomas-chroma: Move to golang-xyz. 
* gnu/packages/golang.scm (go-github-com-alecthomas-chroma): Move from
here ...
* gnu/packages/golang-xyz.scm: ... to here.

* gnu/packages/configuration-management.scm: Add (gnu packages
golang-xyz) module.

Change-Id: I0f5f7068f530b282f3636678e9edc4fad6c8c94a
 2024-02-19 23:32:32 +00:00
Artyom V. Poptsov
930692feb0
gnu: Add go-github-com-dustin-gojson. 
* gnu/packages/golang.scm (go-github-com-dustin-gojson): New variable.

Change-Id: Ifc3df4e7a2cdf21bf0725a848123930d61d048e3
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-19 23:32:32 +00:00
Artyom V. Poptsov
084ce22aa3
gnu: Add go-github-com-benbjohnson-clock. 
* gnu/packages/golang-xyz.scm (go-github-com-benbjohnson-clock): New variable.

Change-Id: Ifcb3254e07388a6c7b4a7f9ee5dff4f3b4d25ee8
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-19 23:32:32 +00:00
Sharlatan Hellseher
773d469a0e
gnu: Add go-github-com-golang-jwt-jwt-v5. 
* gnu/packages/golang-crypto.scm (go-github-com-golang-jwt-jwt-v5): New variable.

Change-Id: Ic4dae5e59495c5316586034c5ddbd5bcb70cdf95
 2024-02-19 23:32:32 +00:00
Troy Figiel
971b7b01c1
gnu: Add go-github-com-golang-jwt-jwt-v4. 
* gnu/packages/golang-crypto.scm (go-github-com-golang-jwt-jwt-v4): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: If96f032f404c4aaf80c7bd8a3e231336a8c6dbfb
 2024-02-19 23:32:32 +00:00
Troy Figiel
f5de1f96ed
gnu: Add go-github-com-coocood-freecache. 
* gnu/packages/golang-xyz.scm (go-github-com-coocood-freecache): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-19 23:32:32 +00:00