Arun Isaac
563e4bd884
gnu: cwltool: Update to 3.0.20210319143721.
...
* gnu/packages/bioinformatics.scm (cwltool): Update to 3.0.20210319143721.
[arguments]: In the loosen-version-restrictions phase, relax pytest version
restriction. In the modify-tests phase, delete file tests/test_content_type.py
since it contains tests that require network access.
2021-04-14 22:39:54 +05:30
Arun Isaac
12e210d907
gnu: python-schema-salad: Update to 7.1.20210316164414.
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* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
7.1.20210316164414.
[arguments]: Add skip-failing-tests phase.
2021-04-14 22:39:54 +05:30
Mathieu Othacehe
3a2747ab74
gnu: cuirass: Update to 1.0.0-11.922cc66.
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* gnu/packages/ci.scm (cuirass): Update to 1.0.0-11.922cc66.
2021-04-14 18:05:16 +02:00
Ricardo Wurmus
863bd265e4
gnu: python-stevedore: Propagate pbr.
...
* gnu/packages/openstack.scm (python-stevedore)[native-inputs]: Move
python-pbr from here...
[propagated-inputs]: ...to here.
[arguments]: Add phase to patch requirements.
2021-04-14 17:15:23 +02:00
Ricardo Wurmus
9fd8f44bd7
gnu: Add python-ld.
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* gnu/packages/python-xyz.scm (python-ld): New variable.
2021-04-14 17:15:23 +02:00
Mathieu Othacehe
3f3d66377c
services: cuirass: Use "/tmp" database host.
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This is a follow-up of c311147bd1
2021-04-14 16:09:35 +02:00
Mathieu Othacehe
5bc5371b34
gnu: cuirass: Update to 1.0.0-10.17e8759.
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* gnu/packages/ci.scm (cuirass): Update to 1.0.0-10.17e8759.
2021-04-14 15:07:44 +02:00
Paul Garlick
9153e12d73
gnu: Add texlive-ly1.
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* gnu/packages/tex.scm: New package.
2021-04-14 12:04:14 +01:00
Nicolas Goaziou
f181ee1f42
gnu: emacs-vertico: Update to 0.4.
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* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.4.
2021-04-14 10:25:54 +02:00
Ricardo Wurmus
2aa03a99e7
gnu: Add srecord.
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* gnu/packages/flashing-tools.scm (srecord): New variable.
2021-04-14 10:20:29 +02:00
Trevor Hass
c5e149a9d9
gnu: minetest: Fix absolute path to 'rm' command.
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* gnu/packages/games.scm (minetest)[patch-sources]: Substitute '/bin/rm' path.
[inputs]: Add coreutils.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-04-14 09:41:57 +02:00
Leo Famulari
a758a8a3c2
gnu: Guix: Update to 1.2.0-21.4dff6ec.
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Fixes <https://bugs.gnu.org/46829 >.
* gnu/packages/package-management.scm (guix): Update to 1.2.0-21.4dff6ec.
2021-04-13 19:24:31 -04:00
Leo Prikler
4dff6ecde8
Revert "services: mysql: Add extra-environment as configuration option."
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This reverts commit f3626119d7
2021-04-14 00:59:52 +02:00
Ludovic Courtès
c2e83b7105
gnu: guile-git: Update to 0.5.0.
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* gnu/packages/guile.scm (guile-git): Update to 0.5.0.
2021-04-13 22:08:01 +02:00
Xinglu Chen
82543e9649
gnu: emacs-git-link: Update to 0.8.3.
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* gnu/packages/emacs-xyz.scm (emacs-git-link): Update to 0.8.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-04-13 14:28:50 -04:00
Leo Famulari
15de49e60b
gnu: le-certs: Update to new Let's Encrypt certificates.
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* gnu/packages/certs.scm (le-certs): Update the certificate store.
[inputs]: Add isrgrootx2.pem, letsencryptauthorityr3.pem,
letsencryptauthorityr4.pem, letsencryptauthoritye1.pem, and
letsencryptauthoritye2.pem. Remove letsencryptauthorityx3.pem and
letsencryptauthorityx4.pem.
[arguments]: Adjust the builder accordingly.
2021-04-13 13:46:24 -04:00
Mathieu Othacehe
c51ffa784e
tests: postgresql: Fix it.
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This is a follow-up of c311147bd1
2021-04-13 19:31:28 +02:00
Mathieu Othacehe
ea89fcb0da
services: postgresql: Use "/tmp" host directory.
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This is a follow-up of c311147bd1
2021-04-13 19:31:20 +02:00
methuselah-0
f3626119d7
services: mysql: Add extra-environment as configuration option.
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* gnu/services/databases.scm (mysql-configuration): Add extra-environment
(mysql-service): Use #:log-file and #:environment-variables
* doc/guix.texi: Document it.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-04-13 18:47:32 +02:00
Peter Lo
b5607d830c
gnu: Add r-randomforestsrc.
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* gnu/packages/cran.scm (r-randomforestsrc): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-04-13 14:44:32 +02:00
Julien Lepiller
9b976cfe1d
nls: Add Slovak translation.
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* po/guix/LINGUAS: Add 'sk'.
* po/guix/sk.po: New file.
2021-04-13 14:28:01 +02:00
Efraim Flashner
516a101dd4
gnu: openconnect-sso: Update to 0.7.2.
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* gnu/packages/vpn.scm (openconnect-sso): Update to 0.7.2.
[arguments]: Remove 'adjust-package-version-requirements phase.
2021-04-13 15:21:32 +03:00
Roel Janssen
f0741f3efe
gnu: Add r-hmm.
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* gnu/packages/cran.scm (r-hmm): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-04-13 13:55:01 +02:00
Ricardo Wurmus
9e7f09cbec
gnu: python-tinycss2: Enable tests.
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* gnu/packages/python-web.scm (python-tinycss2)[source]: Fetch from git
repository to include tests.
[arguments]: Build from source with flit.
[native-inputs]: Add python-flit, python-pytest, python-pytest-cov,
python-pytest-flake8, and python-pytest-isort.
2021-04-13 13:41:19 +02:00
Ricardo Wurmus
cf1517a1b7
gnu: python-ipywidgets: Update to 7.6.3.
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* gnu/packages/python-xyz.scm (python-ipywidgets): Update to 7.6.3.
[propagated-inputs]: Add python-ipython, python-jupyterlab-widgets, and
python-nbformat.
[native-inputs]: Remove python-nose; add python-mock and ptyhon-pytest-cov.
2021-04-13 13:41:19 +02:00
Ricardo Wurmus
7c4f9c17de
gnu: python-widgetsnbextension: Remove unnecessary inputs.
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* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Remove python-argon2-cffi, python-ipykernel, and python-terminado.
[native-inputs]: Remove python-certifi and python-nose.
2021-04-13 13:41:19 +02:00
Ricardo Wurmus
4cb6120584
gnu: Add python-jupyterlab-widgets.
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* gnu/packages/jupyter.scm (python-jupyterlab-widgets): New variable.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
a26dd2e282
gnu: Add python-jupyter-packaging.
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* gnu/packages/jupyter.scm (python-jupyter-packaging): New variable.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
c00996fdbe
gnu: Add python-deprecation.
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* gnu/packages/python-xyz.scm (python-deprecation): New variable.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
5c89e2ac6f
gnu: python-testpath: Update to 0.4.4.
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* gnu/packages/check.scm (python-testpath): Update to 0.4.4.
[arguments]: Build the package as intended with flit.
[native-inputs]: Add python-flit.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
636f4d5051
gnu: python-flit: Update to 3.2.0.
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* gnu/packages/python-xyz.scm (python-flit): Update to 3.2.0.
[source]: Fetch from git repository to include flit_core.
[arguments]: Add phases to bootstrap the build.
[propagated-inputs]: Add python-pytoml and python-toml.
[native-inputs]: Add python-docutils, python-responses,
python-pygments-github-lexers, python-pytest, python-pytest-cov,
python-sphinx, python-sphinxcontrib-github-alt, and python-testpath.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
a818a34f88
gnu: Add python-sphinxcontrib-github-alt.
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* gnu/packages/sphinx.scm (python-sphinxcontrib-github-alt): New variable.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
f5acecdd46
gnu: Add python-requests-unixsocket.
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* gnu/packages/python-web.scm (python-requests-unixsocket): New variable.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
2572bc8125
gnu: Add python-pygments-github-lexers.
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* gnu/packages/python-xyz.scm (python-pygments-github-lexers): New variable.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
3bd962bc3c
gnu: Add python-pytoml.
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* gnu/packages/python-build.scm (python-pytoml): New variable.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
5ce53a4d1c
gnu: Remove python2-ipykernel.
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* gnu/packages/python-xyz.scm (python2-ipykernel): Remove variable.
(python-ipykernel)[properties]: Remove python2-variant.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
89f1a4a415
gnu: Remove python2-jupyter-console.
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* gnu/packages/python-xyz.scm (python2-jupyter-console): Remove variable.
(python-jupyter-console)[properties]: Remove python2-variant.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
a0a8fdeaf2
gnu: Remove python2-jupyter-core.
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* gnu/packages/python-xyz.scm (python2-jupyter-core): Remove variable.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
3a62614f32
gnu: Remove python2-ipyparallel.
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* gnu/packages/python-xyz.scm (python2-ipyparallel): Remove variable.
2021-04-13 13:41:18 +02:00
Ricardo Wurmus
1388c166e7
gnu: Remove python2-matplotlib-documentation.
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* gnu/packages/python-xyz.scm (python2-matplotlib-documentation): Remove variable.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
6b3872e871
gnu: python-nbformat: Update to 5.1.3.
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* gnu/packages/python-xyz.scm (python-nbformat): Update to 5.1.3.
[arguments]: Remove to enable tests.
[native-inputs]: Add python-pytest.
[properties]: Add python2-variant.
(python2-nbformat): Keep at version 4.4.0; override version and source field.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
f4af353cb2
gnu: python-nbconvert: Update to 6.0.7.
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* gnu/packages/python-xyz.scm (python-nbconvert): Update to 6.0.7.
[arguments]: Remove configure flags, enable tests, override check phase.
[propagated-inputs]: Add python-defusedxml, python-nbclient,
python-pandocfilters, python-jupyterlab-pygments, and python-testpath.
[properties]: Add python2-variant.
(python2-nbconvert): Override version, source, arguments, and
propagated-inputs.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
74d2d7a322
gnu: Add python-nbclient.
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* gnu/packages/jupyter.scm (python-nbclient): New variable.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
95456c2fc9
gnu: Add python-jupyterlab-pygments.
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* gnu/packages/jupyter.scm (python-jupyterlab-pygments): New variable.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
2043e7bfc8
gnu: Add python-nest-asyncio.
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* gnu/packages/python-xyz.scm (python-nest-asyncio): New variable.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
6d0a3dc4bc
gnu: python-notebook: Update inputs.
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* gnu/packages/python-xyz.scm (python-notebook)[propagated-inputs]: Add
python-argon2-cffi, python-ipykernel, python-ipython-genutils, python-jinja2,
python-jupyter-client, python-pyzmq, python-tornado-6, and python-traitlets.
[native-inputs]: Remove python-nose and python-sphinx; add python-coverage,
python-nbval, python-pytest, python-pytest-cov, and
python-requests-unixsocket.
[arguments]: Use pytest instead of nosetests.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
e9008a66ea
gnu: python-notebook: Update to 6.3.0.
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* gnu/packages/python-xyz.scm (python-notebook): Update to 6.3.0.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
a7a92c00f4
gnu: python-widgetsnbextension: Add missing inputs.
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* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Add python-argon2-cffi and python-terminado.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
02746ead49
gnu: python-ipykernel: Update to 5.5.3.
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* gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.5.3.
2021-04-13 13:41:17 +02:00
Ricardo Wurmus
b1415bf089
gnu: python-jupyter-client: Update to 6.1.12.
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* gnu/packages/python-xyz.scm (python-jupyter-client): Update to 6.1.12.
[propagated-inputs]: Add python-dateutil and python-tornado-6.
[native-inputs]: Add python-pytest.
2021-04-13 13:41:17 +02:00
