Commit graph

114170 commits

Author SHA1 Message Date
Ricardo Wurmus
e82e8329f5
gnu: r-zellkonverter: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.10.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
61b9cc9b50
gnu: r-zlibbioc: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.46.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
d9a9bcf5c6
gnu: r-xvector: Update to 0.40.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.40.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ed59644ba0
gnu: r-xmapbridge: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.58.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
753beb909f
gnu: r-xina: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-xina): Update to 1.18.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
681a784204
gnu: r-vsn: Update to 3.68.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.68.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
7a6fa454aa
gnu: r-variantannotation: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.46.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
998c7242c2
gnu: r-tximport: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.28.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ea8a5b5d01
gnu: r-topgo: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.52.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
221c9b3914
gnu: r-systempiper: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ec18aab140
gnu: r-sva: Update to 3.48.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.48.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
77e5cffb35
gnu: r-summarizedexperiment: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
028e3d5219
gnu: r-structuralvariantannotation: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.16.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
08ca51d2e0
gnu: r-stringdb: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.12.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
b54be030aa
gnu: r-stager: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.22.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
5698bf6fed
gnu: r-slingshot: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.8.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
15caa80904
gnu: r-scds: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.16.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
93c0b52f6a
gnu: r-trajectoryutils: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.8.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
a48cb51ed0
gnu: r-transcriptr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.28.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
b28d21fff2
gnu: r-simplifyenrichment: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.10.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
8db5bea2ba
gnu: r-shortread: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.58.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
7c53819208
gnu: r-shinymethyl: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.0.
[propagated-inputs]: Remove r-illuminahumanmethylation450kmanifest and r-matrixstats; add
r-biobase, r-htmltools, and r-matrixgenerics.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
6264a7cca0
gnu: r-seqpattern: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.32.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
bbdb686878
gnu: r-seqlogo: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.66.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
8e9d0d590f
gnu: r-scry: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.12.0.
[propagated-inputs]: Remove r-hdf5array.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
3cd53df25a
gnu: r-scmap: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
70433802aa
gnu: r-scdblfinder: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.14.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
22f63061e3
gnu: r-scannotatr: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.6.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
2521248770
gnu: r-rtracklayer: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.60.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
04a5521933
gnu: r-rsamtools: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.16.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
c2f9c0af28
gnu: r-rhdf5filters: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.0.
[arguments]: Add phase 'use-system-libraries.
[inputs]: Add bzip2, c-blosc, and zstd:lib.
[native-inputs]: Add r-biocstyle and r-rmarkdown.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
4e9e8ed194
gnu: r-rhdf5: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.44.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
cc5dc923a6
gnu: r-regioner: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.32.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
07a18fe524
gnu: r-rcas: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.26.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
bc5d14d246
gnu: r-rbgl: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.76.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
70af2c3137
gnu: r-protgenerics: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.32.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
8e08912fcd
gnu: r-pcamethods: Update to 1.92.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.92.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
fdf3453dad
gnu: r-pcaexplorer: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
e408cd70e8
gnu: r-oscope: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.30.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
18d4032d2a
gnu: r-organismdbi: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.42.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
3c31e017e2
gnu: r-organism-dplyr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.28.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
394c951ba2
gnu: r-mzr: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
3e05ea0edb
gnu: r-mzid: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.38.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
6d09227e1f
gnu: r-msnid: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.34.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
6bbb3bedb1
gnu: r-msnbase: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.26.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
5c6355ca35
gnu: r-msa: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.32.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
ba6ed3ff40
gnu: r-mutationalpatterns: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.10.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
37e95f3c9c
gnu: r-muscat: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.14.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
da92987a4b
gnu: r-mmuphin: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.14.0.
[propagated-inputs]: Remove r-biocstyle.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
2ebeeeb438
gnu: r-methylkit: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.26.0.
2023-04-29 20:27:57 +02:00