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Author SHA1 Message Date
Ricardo Wurmus
fdb0b40b0e
gnu: pepr: Use PYPI-URI. 
* gnu/packages/bioinformatics.scm (pepr)[source]: Use PYPI-URI.
 2019-01-25 23:27:25 +01:00
Ricardo Wurmus
4cd7c58cf1
gnu: python2-warpedlmm: Use PYPI-URI. 
* gnu/packages/bioinformatics.scm (python2-warpedlmm)[source]: Use PYPI-URI.
 2019-01-25 23:26:50 +01:00
Ricardo Wurmus
99d1744611
gnu: attic: Use PYPI-URI. 
* gnu/packages/backup.scm (attic)[source]: Use PYPI-URI.
 2019-01-25 23:21:20 +01:00
Ricardo Wurmus
4267aa75a3
gnu: graphios: Use PYPI-URI. 
* gnu/packages/admin.scm (graphios)[source]: Use PYPI-URI.
 2019-01-25 23:20:17 +01:00
Ricardo Wurmus
aeec4a8fc1
gnu: python-sqlalchemy: Use PYPI-URI. 
* gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
 2019-01-25 23:18:55 +01:00
Ricardo Wurmus
7d4dae6a8d
gnu: python-pyaudio: Use PYPI-URI. 
* gnu/packages/audio.scm (python-pyaudio)[source]: Use PYPI-URI.
 2019-01-25 23:17:39 +01:00
Ricardo Wurmus
723f332551
gnu: femtolisp: Use INVOKE. 
* gnu/packages/scheme.scm (femtolisp)[arguments]: Remove "bootstrap" phase;
use INVOKE and return #T unconditionally.
 2019-01-25 23:11:21 +01:00
Christopher Baines
dd7bc92afc
gnu: linkchecker: Fix most test failures. 
Add a patch to skip more tests that require the network. Along with some other
changes, this gets all but of one of the tests passing.

The remaining test is broken due to a problem with the Python package in Guix,
which is fixed by [1] which is currently on the core-updates branch. This
patch doesn't work on core-updates due to python2-miniboa not being present.

1: d453b0e11d

* gnu/packages/python.scm (linkchecker)[source]: Add patch.
[native-inputs]: Add more inputs required for the tests.
[arguments]: Enable the tests, move the 'check phase after 'install. Test
using the installed software, and use py.test.
 2019-01-25 22:00:05 +00:00
Eric Bavier
7e309e8a8d
gnu: dealii-openmpi: Setup MPI for tests. 
* gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
 2019-01-25 13:10:05 -06:00
Eric Bavier
6161141e91
superlu-dist: Upgrade to 6.1.0. 
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file.
* gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0.  Remove
extraneous 'use-modules' in snippet.
[build-system]: Change to cmake-build-system.
[propagated-inputs]:   Replace pt-scotch with pt-scotch32 to match integer
sizes.  Add "parmetis" input, from pt-scotch32.  Move lapack to ...
[inputs]: ...here.  Add openblas and combinatorial-blas.
[arguments]: Replace 'configure' phase with #:configure-flags.  Add
'set-c++-standard' and 'omp-setup' phases.  Remove
'create-install-directories, 'check', and 'install' phases, which are now
handled by cmake.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2019-01-25 13:10:05 -06:00
Eric Bavier
fd3733432b
scotch: Upgrade to 6.0.6. 
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase.  Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
 2019-01-25 13:10:05 -06:00
Eric Bavier
a6b9ebc2fc
gnu: Add Combinatorial BLAS. 
* gnu/packages/maths.scm (combinatorial-blas): New variable.
* gnu/packages/patches/combinatorial-blas-awpm.patch,
gnu/packages/patches/combinatorial-blas-io-fix.patch: New files
* gnu/local.mk(dist_patch_DATA): Add them.
 2019-01-25 13:09:47 -06:00
Danny Milosavljevic
519be98c35
linux-modules: module-soft-dependencies: Remove colon from section names. 
Follow-up to 1a5f46621b.

* gnu/build/linux-modules.scm (module-soft-dependencies): Remove colon from
section names.
 2019-01-25 18:24:00 +01:00
Danny Milosavljevic
1a5f46621b
linux-modules: Add module-soft-dependencies. 
* gnu/build/linux-modules.scm (not-softdep-whitespace): New variable.
(module-soft-dependencies): New procedure.
 2019-01-25 18:14:16 +01:00
Nicolas Goaziou
1faf0a0459
gnu: Add stepmania. 
* gnu/packages/games.scm (stepmania):
* gnu/packages/video.scm (ffmpeg-for-stepmania): New variables.
 2019-01-25 18:08:21 +01:00
Ricardo Wurmus
81cf0174b5
gnu: kcoreaddons: Fix broken test. 
* gnu/packages/kde-frameworks.scm (kcoreaddons)[arguments]: Add build phase
"fix-broken-test".
 2019-01-25 15:37:23 +01:00
Ricardo Wurmus
fd007bebdd
gnu: infiniband-diags: Remove custom bootstrap phase. 
* gnu/packages/fabric-management.scm (infiniband-diags)[arguments]: Remove
"autotools" phase.
 2019-01-25 15:20:53 +01:00
Ricardo Wurmus
776248419f
gnu: gpgme: Update to 1.12.0. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.12.0.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus
1d7b8a2452
gnu: gpgme: Add patch to fix qgpgme tests. 
* gnu/packages/gnupg.scm (gpgme)[source]: Add upstream patch.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus
a8416e6951
gnu: pcb-rnd: Use INVOKE. 
* gnu/packages/engineering.scm (pcb-rnd)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus
5cb9754cf4
gnu: proplib: Use INVOKE. 
* gnu/packages/embedded.scm (proplib)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus
78854b3849
gnu: jimtcl: Use INVOKE. 
* gnu/packages/embedded.scm (jimtcl)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus
3af2708881
gnu: greenisland: Use INVOKE. 
* gnu/packages/display-managers.scm (greenisland)[arguments]: Use INVOKE in
check phase.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus
3692cffed4
gnu: assword: Use INVOKE. 
* gnu/packages/password-utils.scm (assword)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus
c9a65d5c37
gnu: python-oslosphinx: Use INVOKE. 
* gnu/packages/openstack.scm (python-oslosphinx)[arguments]: Use INVOKE.
 2019-01-25 15:17:47 +01:00
Ricardo Wurmus
c8780a1038
gnu: python-reno: Use INVOKE. 
* gnu/packages/openstack.scm (python-reno)[arguments]: Use INVOKE.
[native-inputs]: Replace "git" with "git-minimal".
 2019-01-25 15:17:47 +01:00
Gabriel Hondet
4ad7d037ad
gnu: Add ghc-libmpd. 
* gnu/packages/haskell.scm (ghc-libmpd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-25 14:06:38 +01:00
Ludovic Courtès
bd414e273c
weather: Add '--coverage'. 
* guix/scripts/weather.scm (show-help, %options): Add '--coverage'.
(package-partition-boundary, package->output-mapping)
(substitute-oracle, report-package-coverage-per-system)
(report-package-coverage): New procedures.
(guix-weather): Honor '--coverage'.
* doc/guix.texi (Invoking guix weather): Document it.
 2019-01-25 14:06:37 +01:00
Ludovic Courtès
af77219e8a
refresh: Better account for private and generated packages. 
Until now, private and generated packages (e.g., those created by
'texlive-union') we missing from the list passed to 'node-back-edges',
which would lead to inaccurate dependent counts.

Previously we'd get:

  $ guix refresh -l texlive-fonts-cm
  Building the following 80 packages would ensure 116 dependent packages
  are rebuilt: …

Now we have:

  $ Building the following 240 packages would ensure 597 dependent
  packages are rebuilt: …

* guix/scripts/refresh.scm (list-dependents): Call 'package-closure'.
 2019-01-25 14:06:37 +01:00
Ludovic Courtès
4d6ce0f12c
refresh: Fix format string that would lead '-l' to print incorrect numbers. 
The skip "~*" argument was misplaced, leading the number of dependents
to be skipped (instead of the number of covering packages.)  Thus, we'd
get:

  $ guix refresh -l ocaml4.02-ppx-deriving@4.1
  Building the following package would ensure 1 dependent packages are rebuilt: bap@1.3.0

instead of:

  Building the following package would ensure 26 dependent packages are rebuilt: bap@1.3.0

* guix/scripts/refresh.scm (list-dependents): Move "~*" in the right
place, to skip (length covering) rather than (length dependents).
 2019-01-25 14:06:37 +01:00
Ludovic Courtès
731c1a20bc
weather: Ignore deprecated packages but not hidden packages. 
* guix/scripts/weather.scm (all-packages): Pass #:select? to
'fold-packages'.
 2019-01-25 14:06:37 +01:00
Ludovic Courtès
3e223a22a7
packages: Add 'package-closure'. 
* guix/packages.scm (package-closure): New procedure.
* tests/packages.scm ("package-closure"): New test.
 2019-01-25 14:06:37 +01:00
Ricardo Wurmus
c6e33df90f
gnu: python-pyopenssl: Update to 19.0.0. 
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 19.0.0.
[arguments]: Use INVOKE.
 2019-01-25 14:02:04 +01:00
Ricardo Wurmus
39df4d1992
gnu: python2-pyqt-4: Use INVOKE. 
* gnu/packages/qt.scm (python2-pyqt-4)[arguments]: Use INVOKE.
 2019-01-25 13:59:53 +01:00
Ricardo Wurmus
41173df9f8
gnu: qwt: Use INVOKE. 
* gnu/packages/qt.scm (qwt)[arguments]: Use INVOKE.
 2019-01-25 13:53:04 +01:00
Ricardo Wurmus
5b8484635f
gnu: ldb: Use INVOKE. 
* gnu/packages/samba.scm (ldb)[arguments]: Use INVOKE.
 2019-01-25 13:44:13 +01:00
Ricardo Wurmus
ed0d6ed9a6
gnu: tevent: Use INVOKE. 
* gnu/packages/samba.scm (tevent)[arguments]: Use INVOKE.
 2019-01-25 13:42:58 +01:00
Ricardo Wurmus
d83c52c6bb
gnu: talloc/static: Use INVOKE. 
* gnu/packages/samba.scm (talloc/static)[arguments]: Use INVOKE in the build
phase.
 2019-01-25 13:39:12 +01:00
Ricardo Wurmus
ed5900890e
gnu: tre: Use INVOKE. 
* gnu/packages/regex.scm (tre)[arguments]: Use INVOKE.
 2019-01-25 13:37:36 +01:00
Ricardo Wurmus
4255818d1c
gnu: python-rdflib: Use PYPI-URI. 
* gnu/packages/rdf.scm (python-rdflib)[source]: Use PYPI-URI.
[arguments]: Use INVOKE in commented build phase.
 2019-01-25 13:36:14 +01:00
Ricardo Wurmus
48b11025b7
gnu: ocaml-utop: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-utop)[arguments]: Use INVOKE.
 2019-01-25 13:32:41 +01:00
Ricardo Wurmus
c6aaa7bed6
gnu: ocaml-zed: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-zed)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:32:04 +01:00
Ricardo Wurmus
04daa1ed72
gnu: ocaml-zarith: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-zarith)[arguments]: Use INVOKE.
 2019-01-25 13:31:29 +01:00
Ricardo Wurmus
2c0234e78e
gnu: camlp4-4.02: Use INVOKE. 
* gnu/packages/ocaml.scm (camlp4-4.02)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:26:24 +01:00
Ricardo Wurmus
fa5d6e4c6f
gnu: ocaml-4.01: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-4.01)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:23:27 +01:00
Ricardo Wurmus
bb29e855da
gnu: ocaml-4.02: Use INVOKE. 
* gnu/packages/ocaml.scm (ocaml-4.02)[arguments]: Use INVOKE in build phases.
 2019-01-25 13:22:34 +01:00
Ricardo Wurmus
20fe9728c4
gnu: tomsfastmath: Use INVOKE. 
* gnu/packages/multiprecision.scm (tomsfastmath)[arguments]: Use INVOKE in
"check" phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus
6542b2db5d
gnu: freetalk: Remove custom bootstrap phase. 
* gnu/packages/messaging.scm (freetalk)[arguments]: Remove "autogen" phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus
3fa013af78
gnu: perl-net-psyc: Update to 1.3. 
* gnu/packages/messaging.scm (perl-net-psyc): Update to 1.3.
[native-inputs]: Add unzip.
[arguments]: Use INVOKE in build phase.
 2019-01-25 13:21:20 +01:00
Ricardo Wurmus
b11af07a29
gnu: dino: Update to 0.0-4.8e14ac6. 
* gnu/packages/messaging.scm (dino): Update to 0.0-4.8e14ac6.
[arguments]: Use INVOKE in build phases.
[inputs]: Add qrencode; replace sqlite with sqlite-with-column-metadata.
 2019-01-25 13:21:20 +01:00