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Author SHA1 Message Date
Ricardo Wurmus
7b18e6d000
gnu: r-covr: Update to 3.4.0. 
* gnu/packages/cran.scm (r-covr): Update to 3.4.0.
 2019-11-28 10:03:20 +01:00
Ricardo Wurmus
7dcd823978
gnu: r-kohonen: Update to 3.0.10. 
* gnu/packages/cran.scm (r-kohonen): Update to 3.0.10.
[propagated-inputs]: Remove r-mass.
 2019-11-28 10:03:20 +01:00
Ricardo Wurmus
bb180e8a7a
gnu: r-grimport2: Update to 0.2-0. 
* gnu/packages/cran.scm (r-grimport2): Update to 0.2-0.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus
e2448b4b14
gnu: r-grimport: Update to 0.9-3. 
* gnu/packages/cran.scm (r-grimport): Update to 0.9-3.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus
04c3fd85ea
gnu: r-rnifti: Update to 1.0.1. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.0.1.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus
ad6ab1a881
gnu: r-emmeans: Update to 1.4.3. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.3.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus
fda807da90
gnu: r-writexl: Update to 1.2. 
* gnu/packages/cran.scm (r-writexl): Update to 1.2.
 2019-11-28 10:03:19 +01:00
Ricardo Wurmus
efec58e7ff
gnu: r-factominer: Update to 2.0. 
* gnu/packages/cran.scm (r-factominer): Update to 2.0.
[propagated-inputs]: Add r-ggplot2 and ggrepel.
 2019-11-28 10:03:19 +01:00
Oleg Pykhalov
37515553b5
gnu: tome4: Update to 1.6.4. 
* gnu/packages/games.scm (tome4): Update to 1.6.4.
 2019-11-28 08:55:43 +03:00
Leo Famulari
7297ebb287
gnu: Blender: Update to 2.81. 
* gnu/packages/graphics.scm (blender): Update to 2.81.
[inputs]: Add libxi, libxrender, and tbb.
 2019-11-27 21:58:45 -05:00
Marius Bakke
0897ad7fac
Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
Pierre Langlois
9943d238e9
gnu: feh: Adapt tests for imlib2 1.6. 
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: New file.
* gnu/packages/image-viewers.scm (feh)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-11-28 00:33:49 +01:00
Marius Bakke
ba5ef9997b
gnu: python-dbus: Update to 1.2.14. 
* gnu/packages/python-xyz.scm (python-dbus): Update to 1.2.14.
(python2-dbus)[arguments]: Remove.
 2019-11-28 00:33:48 +01:00
Marius Bakke
e1695f4d58
gnu: whois: Update to 5.5.3. 
* gnu/packages/networking.scm (whois): Update to 5.5.3.
 2019-11-28 00:33:48 +01:00
Marius Bakke
fd5ccec796
gnu: bubblewrap: Update to 0.4.0. 
* gnu/packages/virtualization.scm (bubblewrap): Update to 0.4.0.
 2019-11-28 00:33:48 +01:00
Marius Bakke
546c9fa660
gnu: bubblewrap: Update home page. 
* gnu/packages/virtualization.scm (bubblewrap)[source, home-page]: Follow
redirect to.
 2019-11-28 00:33:48 +01:00
Marius Bakke
164d0ad352
gnu: python-xapian-bindings: Sphinx is a native input. 
* gnu/packages/search.scm (python-xapian-bindings)[inputs]: Remove
PYTHON-SPHINX.
[native-inputs]: New field.
 2019-11-28 00:33:48 +01:00
Marius Bakke
7b5a120730
gnu: xapian: Update to 1.4.14. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.14.
 2019-11-28 00:33:48 +01:00
Marius Bakke
60392114ae
gnu: notmuch: Update to 0.29.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.29.3.
 2019-11-28 00:33:47 +01:00
Marius Bakke
38ae96e9c5
gnu: xorg-server: Update to 1.20.6. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.6.
(xorg-server-for-tests): Stay on 1.20.5.
 2019-11-28 00:33:47 +01:00
Marius Bakke
ff3375251d
gnu: Use the test-only Xorg variant for tests. 
* gnu/packages/education.scm (gcompris-qt)[native-inputs]: Change XORG-SERVER
to XORG-SERVER-FOR-TESTS.
* gnu/packages/engineering.scm (pcb, qucs, openscad)[native-inputs]: Likewise.
* gnu/packages/gnome.scm (libbonoboui, d-feet, gspell, libdazzle, libhandy)[native-inputs]: Likewise.
* gnu/packages/gnupg.scm (parcimonie)[native-inputs]: Likewise.
* gnu/packages/graphics.scm (opensubdiv, rapicorn)[native-inputs]: Likewise.
* gnu/packages/gtk.scm (gtksourceview-2, gtksourceview)[native-inputs]: Likewise.
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (kconfig, kcoreaddons, kwidgetsaddons,
kwindowsystem, kdeclarative)[native-inputs]: Likewise.
* gnu/packages/kde-plasma.scm (kscreenlocker)[native-inputs]: Likewise.
* gnu/packages/messaging.scm (gajim)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-seaborn)[native-inputs]: Likewise.
 2019-11-28 00:33:47 +01:00
Marius Bakke
6d460e80d1
gnu: Qt: Update to 5.12.6 LTS. 
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript, qtquickcontrols,
qtquickcontrols2, qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing,
qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth, qtremoteobjects, qtspeech):
Update to 5.12.6.
 2019-11-27 19:40:13 +01:00
Marius Bakke
f0de36cba7
gnu: qtbase: Restore compatibility with old kernels. 
* gnu/packages/qt.scm (qtbase)[arguments]: Add 'no-feature-renameat2' to the
configure flags.
 2019-11-27 19:40:13 +01:00
Marius Bakke
a59e2dd8cd
gnu: qtbase: Use absolute references in .prl files. 
This fixes <https://bugs.gnu.org/38405>.

* gnu/packages/qt.scm (qtbase)[arguments]: Add phase 'patch-prl-files'.
 2019-11-27 19:40:13 +01:00
Efraim Flashner
8456f9fcd9
gnu: gcc-7: Update to 7.5.0. 
* gnu/packages/gcc.scm (gcc-7): Update to 7.5.0.
 2019-11-27 19:58:52 +02:00
Ricardo Wurmus
dcc7fad001
gnu: r-txtplot: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-txtplot): Move from here...
* gnu/packages/cran.scm (r-txtplot): ...to here.
 2019-11-27 18:36:39 +01:00
Ricardo Wurmus
f3640e7395
gnu: Remove obsolete import of R build system module. 
* gnu/packages/maths.scm: Remove import of (guix build-system r).
 2019-11-27 18:29:32 +01:00
zimoun
ef7944b94f
gnu: r-subplex: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-subplex): Move from here...
* gnu/packages/cran.scm (r-subplex): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun
682768deb0
gnu: r-pracma: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-pracma): Move from here...
* gnu/packages/cran.scm (r-pracma): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun
9bd56b1a77
gnu: r-desolve: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-desolve): Move from here...
* gnu/packages/cran.scm (r-desolve): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun
0eb59d9eac
gnu: r-quadprog: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-quadprog): Move from here...
* gnu/packages/cran.scm (r-quadprog): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
Efraim Flashner
3f0f0d61bb
gnu: bash: Update to patch level 11. 
* gnu/packages/bash.scm (%patch-series-5.0): Add patches 8 through 11.
 2019-11-27 15:13:17 +02:00
Pierre Neidhardt
f678cc9c79
gnu: Add glib-with-documentation. 
* gnu/packages/glib.scm (glib-with-documentation): New variable.
(glib)[properties]: Hide package.
 2019-11-27 13:34:22 +01:00
Efraim Flashner
255bb7be0a
gnu: denemo: Move some inputs to native-inputs. 
* gnu/packages/music.scm (denemo)[inputs]: Move intltool, gtk-doc,
libtool ...
[native-inputs]: .. to here.
 2019-11-27 11:33:57 +02:00
Efraim Flashner
4e4aedf097
gnu: binutils: Update to 2.33.1. 
* gnu/packages/base.scm (binutils): Update to 2.33.1.
 2019-11-27 11:25:31 +02:00
Ricardo Wurmus
a132276537
gnu: python-seaborn: Disable matrix test. 
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Add phase
"fix-tests".
 2019-11-27 09:58:28 +01:00
Ricardo Wurmus
9e7cb2f1e1
gnu: python-matplotlib: Update to 3.1.2. 
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.2.
[arguments]: Disable test_backend_webagg and test_constrainedlayout; skip
other tests tagged with "webagg".
 2019-11-27 09:58:28 +01:00
Ricardo Wurmus
f9bd82e7a6
gnu: python-seaborn: Add patch to fix tests. 
* gnu/packages/python-xyz.scm (python-seaborn)[source]: Add upstream patch to
fix test failures.
 2019-11-27 09:58:28 +01:00
Ludovic Courtès
fbecb5cddb
daemon: 'deletePath' uses 'statx' when available. 
* nix/libutil/util.cc (_deletePath) [HAVE_STATX]: Use 'statx'.
 2019-11-27 00:03:03 +01:00
Ludovic Courtès
7738a72186
daemon: GC remove-unused-links phase uses 'statx' when available. 
* config-daemon.ac: Check for 'statx'.
* nix/libstore/gc.cc (LocalStore::removeUnusedLinks) [HAVE_STATX]: Use
'statx' instead of 'lstat'.
 2019-11-27 00:03:03 +01:00
Ludovic Courtès
434138e2f2
substitute: Make '%allow-unauthenticated-substitutes?' public. 
* guix/scripts/substitute.scm (warn-about-missing-authentication): New
procedure.
(%allow-unauthenticated-substitutes?): Turn into a public parameter and
use 'warn-about-missing-authentication'.
(valid-narinfo?): Adjust accordingly.
* tests/substitute.scm (call-with-narinfo): Likewise.
 2019-11-27 00:03:03 +01:00
Ludovic Courtès
7f3bbfaf8e
ui: Adjust SRFI-34 exception handling to Guile 2.9.5. 
* guix/ui.scm (report-load-error, warn-about-load-error)
(read/eval): Match (or 'srfi-34 '%exception) instead of just 'srfi-34 to
match what Guile 2.9.5 does.
 2019-11-27 00:03:03 +01:00
Alexandros Theodotou
7281c8fd7e
gnu: Add helm. 
* gnu/packages/music.scm: (helm): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-27 00:03:03 +01:00
Efraim Flashner
7ad3c81240
gnu: gsl: Update to 2.6. 
* gnu/packages/maths.scm (gsl): Update to 2.6.
[source]: Remove patch.
* gnu/packages/patches/gsl-test-i686.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-11-26 22:26:20 +02:00
Efraim Flashner
ba6008760a
gnu: libgcrypt: Update to 1.8.5. 
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.8.5.
[replacement]: Remove field.
(libgcrypt-1.8.5): Remove variable.
 2019-11-26 22:24:35 +02:00
Efraim Flashner
a0361e0965
gnu: bison: Update to 3.4.2. 
* gnu/packages/bison.scm (bison): Update to 3.4.2.
 2019-11-26 22:18:44 +02:00
Mark H Weaver
778ae9f980
gnu: linux-libre@4.9: Update to 4.9.203. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.203.
(linux-libre-4.9-pristine-source): Update hash.
 2019-11-26 14:38:02 -05:00
Mark H Weaver
93cae7458a
gnu: linux-libre@4.4: Update to 4.4.203. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.203.
(linux-libre-4.4-pristine-source): Update hash.
 2019-11-26 14:37:01 -05:00
Efraim Flashner
67057b1baf
gnu: emacs-shift-number: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-shift-number)[source]: Download
using git-fetch.
 2019-11-26 20:57:33 +02:00
Efraim Flashner
8361231019
gnu: emacs-rsw-elisp: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-rsw-elisp)[source]: Download using
git-fetch.
 2019-11-26 20:56:03 +02:00