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136318 commits

Author SHA1 Message Date
Ricardo Wurmus
339681b5c7
gnu: r-milor: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 2.0.0.
[propagated-inputs]: Add r-matrixgenerics, r-numderiv, r-rcpp, and r-rcpparmadillo.

Change-Id: I5d228959211ba4cdfbd6e8786f5fa801fdb38795
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
37ec72581f
gnu: r-microbiome: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.26.0.

Change-Id: I8ff4db42954af3dbf118f58838cae12c54998fa5
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
6040bcf1d5
gnu: r-mia: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.12.0.

Change-Id: I916224f840fe4f64b3307d09ca2bc00d18b2dcbf
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
32854c58f9
gnu: r-bumpymatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.12.0.

Change-Id: I87baf5a3ad2909cb927d363dd3a379487cc596fd
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
c990a72c67
gnu: r-bumphunter: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.46.0.

Change-Id: I171983cd2e64539fcd2d8f9a07421ff2418382f2
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
f24b16fa41
gnu: r-siggenes: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.78.0.

Change-Id: I3b25af173de02555d4be229fb5f10ec03ee81298
2024-05-08 12:53:31 +02:00
Ricardo Wurmus
cb38250d1d
gnu: r-illuminaio: Update to 0.46.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.46.0.

Change-Id: I5c7a518114f64ae05daec56467a30076313b1bb2
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
f439044038
gnu: r-geoquery: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.72.0.

Change-Id: I8042f082559a8215013f18ebfbb44b019b40c8d6
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
9ec23ccb00
gnu: r-scone: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.28.0.

Change-Id: I94c44dd6323d6ae93e91ef6fadd12de66af4c3b0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
8fc95f20db
gnu: r-scdd: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.28.0.

Change-Id: I42916e2eb192bbb1f24d039eb07d20f066887c3e
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
b0499b5e7f
gnu: r-noiseq: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.48.0.

Change-Id: I2e8160ba86fadcbe804b2690977e993e6ebdb433
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
986711225a
gnu: r-sangerseqr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.40.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I8b140d95d6de99a334372116e81c13b28816a5cb
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
617d87d764
gnu: r-monocle: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.32.0.

Change-Id: I44260b60dc8faea338177ffbd190efa619be4bf0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
6f44c3769a
gnu: r-mast: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.30.0.

Change-Id: Ifed0788bf9e12d4b658493a345b66d66642cb508
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
bd79bfd298
gnu: r-batchelor: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.20.0.

Change-Id: I2b481fbf2d0f519782afb1338ff62b793f48b02b
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
851bebc7bd
gnu: r-residualmatrix: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.14.0.

Change-Id: I868b4a1c8543baf517eb7bdef1be52d854213749
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
427f9232e1
gnu: r-icobra: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.32.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I00098c395e56dd476d7eee1bd5f69e25b1311799
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
fcfa770494
gnu: r-ihw: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.32.0.

Change-Id: Id002b977b421c761f0b5776700283e71f937a04e
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
ce4f5ee13f
gnu: r-lpsymphony: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.32.0.

Change-Id: Ia032fb628cc3a70176f5b34c4d448f0993466200
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
12d37b0c57
gnu: r-karyoploter: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.30.0.

Change-Id: Ie63e8e9a5945d99354d6f98248cddb4fcb0d9655
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
bf52c2a0e9
gnu: r-ebseq: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 2.2.0.

Change-Id: Id136b108abe6d3ee372d08f4a6d6e03f7c285c71
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
81d3077cc7
gnu: r-dnacopy: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.78.0.

Change-Id: Id303aec39ec0b2f2d532267301151fea2e9bf4c7
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
fc71927c70
gnu: r-chipexoqual: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.28.0.

Change-Id: I0cf774225c8cf595cb28e8775ba16eadc2604d63
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
f223fd6e70
gnu: r-destiny: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.18.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I94f4f6b317b300f3abb91520cfece0791c45bba2
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
3a80eb8171
gnu: r-biocsingular: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.20.0.

Change-Id: If23353503d25e3e9b9333b55092360c4dcd02931
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
0f9edc8535
gnu: r-metapod: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.12.0.

Change-Id: I82e4487b9495f94b224fac47d0b86bfe49de7438
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
2d5e861383
gnu: r-ggtree: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.12.0.

Change-Id: Id0230ecfd45c9a02ef1076a603409512ae9cab04
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
0578399109
gnu: r-treesummarizedexperiment: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.12.0.

Change-Id: I3e541e10d3331a79c1b5eed6df49b07ad31694fd
2024-05-08 12:53:30 +02:00
Ricardo Wurmus
a5a48afd52
gnu: r-treeio: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.28.0.
[propagated-inputs]: Add r-yulab-utils.

Change-Id: Icbb80a1fb2a5f1b1a9c0f38fdd92a9af22fafa58
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
5a7511551c
gnu: r-scaledmatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.12.0.

Change-Id: I886c3f2c39a9385a6a1546fd5aacb14b2e744c69
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
6c9dbaa1f0
gnu: r-biocneighbors: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.22.0.

Change-Id: Idef84694ed38033d5aa211a51c83e96d61e000c1
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
6d03ea0bf3
gnu: r-ruvseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.38.0.

Change-Id: I20cd79c28c77979213dde9e298b78bd200686bc5
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
4e1e996469
gnu: r-dnabarcodes: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.34.0.

Change-Id: I19ec9fa1eb4d2a205ce0ef3f0925e42db11fe0d7
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
83bbfba994
gnu: r-inspect: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.34.0.

Change-Id: I4e5ba976f557f06bbfd0a2c4834a18a9f5c39641
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
5452fb5042
gnu: r-plyranges: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-plyranges): Update to 1.24.0.

Change-Id: I99a8d90d6286e1d1fc3ec2ee02fa11d327bd49d0
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
48e8e177c4
gnu: r-plgem: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.76.0.

Change-Id: Ie827507d649f0eb5e9ccf7ed7c7ae6836284262f
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
7f22e3693b
gnu: r-rots: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.32.0.

Change-Id: Iff0ed11cedadfc65e20cc5d39a4262e7974de2db
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
a4edee3e48
gnu: r-glmgampoi: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.16.0.

Change-Id: I2bf8dfb35cb318b146cbe5ff0746fff50cff5245
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
3456d23e24
gnu: r-glimma: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.14.0.

Change-Id: I6c6d182612f065abca75dfc34db0c0a330d1c673
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
d3bef5339c
gnu: r-ctc: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.78.0.

Change-Id: I80cc97542cd21358b0037103d237b7beaf369a41
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
8938e52e40
gnu: r-genomicinteractions: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.38.0.

Change-Id: Ib21a06dcd29cb365ac892a4acddc3d4ac849a82a
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
b1f4794ea4
gnu: r-interactionset: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.32.0.

Change-Id: Ic463139eb4d1b528b945c82854ea6d170ff6d5d0
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
a1197f2e69
gnu: r-riboseqr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.38.0.
[propagated-inputs]: Add r-s4vectors.

Change-Id: I3db5790e20901be4e17e80d17e4e32a4185d4e06
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
a1e7f331a2
gnu: r-riboprofiling: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.34.0.

Change-Id: I93cf780c9e31684f976c5b4d9a5e207d3f3fcd4d
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
ee42719f25
gnu: r-chipcomp: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.34.0.

Change-Id: Ib25d9e41d6378d60328a8461f379a19d87615cd5
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
2eac018b3b
gnu: r-bayseq: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.38.0.

Change-Id: I06fe6bb886c0a8c52f96ae021987e221a4cfd73d
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
6cf5506514
gnu: r-qdnaseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.40.0.

Change-Id: I15030171a4e2eafa324131fe29800c3004b1c3b3
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
10cba6e840
gnu: r-cghcall: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.66.0.

Change-Id: I14bced655bea4c34d9d97ffafdf7435c5bab9d91
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
edabbba1a5
gnu: r-cghbase: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.64.0.

Change-Id: I0a2dc81941c373e7f8d4ecefc196aadf5a2375cd
2024-05-08 12:53:29 +02:00
Ricardo Wurmus
c4e5ed070a
gnu: r-marray: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.82.0.

Change-Id: I5e89a79a53539ffbc503ba08f3f14b4baba14c97
2024-05-08 12:53:29 +02:00