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Author SHA1 Message Date
Ricardo Wurmus
36ec599e78
gnu: Add ghc-lzma. 
* gnu/packages/haskell.scm (ghc-lzma): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
d05ed20ef1
gnu: Add ghc-cereal-conduit. 
* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus
6c8197783d
gnu: Add ghc-atomic-write. 
* gnu/packages/haskell.scm (ghc-atomic-write): New variable.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus
562cfae330
gnu: Add ghc-chart-cairo. 
* gnu/packages/haskell.scm (ghc-chart-cairo): New variable.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus
7df25c77c5
gnu: Add ghc-cairo. 
* gnu/packages/haskell.scm (ghc-cairo): New variable.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus
279c97dba8
gnu: ghc-regex: Fix build. 
* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax
version checks.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus
a45c64701b
gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs. 
* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove
ghc-http-client.
 2018-10-05 23:59:25 +02:00
Ludovic Courtès
42384b517e
progress: Fix total size in "@ download-succeeded" traces. 
Fixes a regression introduced in
1d0be47ab6 whereby the total size for
directories (coming from substitutes) would be 4KiB.  This led the
progress bar to go back to the start, typically.

* guix/progress.scm (progress-reporter/trace): Add 'total'.  In 'start',
initialize it.  Adjust 'report' to update it.  Adjust 'stop' to prefer
SIZE as the actual size and then TOTAL.  Do not use the size of FILE as
the total since that could be 4KiB when FILE is a directory.
 2018-10-05 23:54:18 +02:00
Christopher Baines
11ff2adc74
gnu: ruby-sass: Update to 3.6.0. 
* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0.
[source]: Update sha256.
[native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5.
 2018-10-05 21:25:42 +01:00
Christopher Baines
4d372cb9a2
gnu: Add ruby-mathn. 
* gnu/packages/ruby.scm (ruby-mathn): New variable.
 2018-10-05 21:25:42 +01:00
Christopher Baines
2c7cb711e9
gnu: ruby-sass-spec: Fix spec expectation. 
This fixes building ruby-sass with Ruby 2.5.

* gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to
fix the expectation of one of the tests. Also change the comment regarding the
tests not being run.
 2018-10-05 21:25:42 +01:00
Christopher Baines
39ecb977d3
gnu: ruby-term-ansicolor: Fix test for Ruby 2.5. 
* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test
phase to fix a test that fails under Ruby 2.5.
 2018-10-05 21:25:41 +01:00
Christopher Baines
0b060e3486
gnu: ruby-shindo: Remove -rubygems flags. 
These have been removed in Ruby 2.5.

* gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to
also remove the -rubygems flags.
 2018-10-05 21:25:41 +01:00
Christopher Baines
357450dca0
gnu: bioruby: Update to 1.5.2. 
This works with Ruby 2.5.

* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
 2018-10-05 21:25:39 +01:00
Kei Kebreau
b0e829c632
gnu: gnucash-docs: Update to 3.3. 
The documentation on SourceForge is now located in the same directory as the
source code.

* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
 2018-10-05 14:28:44 -04:00
Kei Kebreau
73ca145a7e
gnu: gnucash: Update to 3.3. 
* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
 2018-10-05 13:41:08 -04:00
Tobias Geerinckx-Rice
fc4738149f
gnu: Add bastet. 
* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-05 19:32:45 +02:00
Tobias Geerinckx-Rice
b008a12ae7
gnu: fdroidserver: Update to 1.0.10. 
* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice
8713c03e55
gnu: audacity: Don't use unstable tarball. 
* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice
3f90445692
gnu: filezilla: Update to 3.37.4. 
* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice
38aca674c3
gnu: libfilezilla: Update to 0.14.0. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
 2018-10-05 19:30:08 +02:00
Ricardo Wurmus
a6798218be
gnu: samtools-0.1: Adjust to match changes in samtools. 
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
8e72f0f319
gnu: deeptools: Update to 3.1.2. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
939882f734
gnu: python-pysam: Update to 0.15.1. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
1a28b9ab55
gnu: python-plotly: Add python-pandas to inputs. 
* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
f79b59e311
gnu: bcftools: Update to 1.9. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
4ae4a15232
gnu: samtools: Update to 1.9. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus
bd5f5eece9
gnu: htslib: Update to 1.9. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
 2018-10-05 09:21:50 +02:00
Mark H Weaver
4a5e2a90d8
gnu: icecat: Add fixes from mozilla-esr60 [security fixes]. 
Includes fixes for CVE-2018-12386 and CVE-2018-12387.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr60 repository.
 2018-10-04 21:35:01 -04:00
Mark H Weaver
2e073dc23c
gnu: linux-libre: Update to 4.18.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12.
(%linux-libre-hash): Update hash.
 2018-10-04 20:36:32 -04:00
Mark H Weaver
2195636cc1
gnu: linux-libre@4.14: Update to 4.14.74. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74.
(%linux-libre-4.14-hash): Update hash.
 2018-10-04 20:36:30 -04:00
Mark H Weaver
45f4ddd7c0
gnu: linux-libre@4.9: Update to 4.9.131. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.
 2018-10-04 20:36:28 -04:00
Paul Garlick
9e2aa70bad
gnu: petsc-openmpi: Configure with support for MUMPS solver. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags.  Move 'mpi-setup' phase
ahead of 'configure' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-10-04 18:21:17 -04:00
Tobias Geerinckx-Rice
d8b042326d
gnu: hiawatha: Set sane run-time directory defaults. 
* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default
directories. Replace the 'remove-empty-dirs' phase with a
'install-no-empty-directories' one.
 2018-10-04 21:28:24 +02:00
Tobias Geerinckx-Rice
b9b53fb4ff
gnu: hwloc: Update to 2.0.2. 
* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
 2018-10-04 21:28:24 +02:00
Tobias Geerinckx-Rice
7382ecd818
gnu: Add nsd. 
* gnu/packages/dns.scm (nsd): New public variable.
 2018-10-04 21:10:34 +02:00
David Thompson
55b616fd15
gnu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779. 
* gnu/packages/guile.scm (guile-next): Update to commit
6f3357b0df64c4be17e72079864c09a542f1c779.
 2018-10-04 13:22:02 -04:00
David Thompson
e14b3067e3
gnu: guile-next: Add the correct native search paths. 
* gnu/packages/guile.scm (guile-next): Add native search paths for version 3.0.
 2018-10-04 13:21:50 -04:00
Tobias Geerinckx-Rice
aff91b0d0b
gnu: hiawatha: Support HTTP/2. 
* gnu/packages/web.sck (hiawatha)[arguments]: USE_SYSTEM_NGHTTP2
to ENABLE_HTTP2.
[inputs]: Add nghttp2:lib.
 2018-10-04 19:06:06 +02:00
Tobias Geerinckx-Rice
8e87aa0497
gnu: hiawatha: Update to 10.8.3. 
* gnu/packages/web.scm (hiawatha): Update to 10.8.3.
[source]: Also delete bundled copy of nghttp2.
[inputs]: Use mbedtls-for-hiawatha instead of vanilla mbedtls-apache.
* gnu/packages/tls.scm (mbedtls-for-hiawatha): New public variable.
 2018-10-04 18:34:29 +02:00
Tobias Geerinckx-Rice
38a9bf805d
gnu: mbedtls-apache: Update to 2.13.0 [security fixes]. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.13.0.
[native-inputs]: Add python.
 2018-10-04 17:42:30 +02:00
Arun Isaac
68c0a6260f
gnu: geos: Update to 3.7.0. 
* gnu/packages/geo.scm (geos): Update to 3.7.0.
 2018-10-04 20:01:06 +05:30
Tobias Geerinckx-Rice
0136fbd167
gnu: hexedit: Update to 1.4.2. 
* gnu/packages/hexedit.scm (hexedit): Update to 1.4.2.
[source]: Use the author's more up-to-date git repository.
[native-inputs]: Add autoconf and automake.
 2018-10-04 15:59:08 +02:00
Tobias Geerinckx-Rice
4fab0da096
gnu: html-xml-utils: Update to 7.7. 
* gnu/packages/xml.scm (html-xml-utils): Update to 7.7.
 2018-10-04 15:59:08 +02:00
Tobias Geerinckx-Rice
ddf72f5059
gnu: perl-xml-feed: Update to 0.54. 
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.54.
 2018-10-04 15:59:07 +02:00
Ludovic Courtès
ca91d35225
gnu: guix: Update to 1d0be47. 
* gnu/packages/package-management.scm (guix): Update to 1d0be47.
 2018-10-04 11:21:37 +02:00
Ludovic Courtès
1d0be47ab6
progress: Generate valid 'download-progress' traces when the size is unknown. 
Fixes <https://bugs.gnu.org/32895>.
Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>.

* guix/progress.scm (progress-reporter/trace): In 'stop', make sure SIZE
is an integer.  Previously we'd generate a "@ download-progress" trace
with #f for the 'transferred' number when downloading files whose size
is not known in advance.
 2018-10-04 10:24:34 +02:00
Diego Nicola Barbato
ff30bb010b
gnu: escpr: Update to 1.6.30. 
* gnu/packages/cups.scm (escpr): Update to 1.6.30.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-04 09:51:47 +02:00
Björn Höfling
63856931db
gnu: opencv: Update to 3.4.3. 
[[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-10-03T22:28:20+0200 using DSA]]

* gnu/packages/image-processing.scm (opencv): Update to 3.4.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-04 09:48:45 +02:00
Ludovic Courtès
666fb2884a
gnu: r-acclma: Fix uses of @acronym in description. 
* gnu/packages/cran.scm (r-acclma)[description]: Fix order of arguments
to @acronym.  The wrong order was causing 'stexi->shtml' to fail (match
error).
 2018-10-04 09:46:43 +02:00