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Author SHA1 Message Date
Ludovic Courtès
5bc4b8e8e3
channels: Warn about missing introductions. 
* guix/channels.scm (latest-channel-instance): Warn when CHANNEL has no
introduction and CHECKOUT contains '.guix-authorizations'.
 2022-10-04 18:15:35 +02:00
Ludovic Courtès
ae1af5d787
gnu: guix: Update to 17134b9. 
* gnu/packages/package-management.scm (guix): Update to 17134b9.
 2022-10-04 18:15:35 +02:00
( via Guix-patches via
7030f592c6
home: Add home-batsignal-service-type. 
* gnu/home/services/pm.scm (home-batsignal-service-type): New variable.
(home-batsignal-configuration): New record type.
* doc/guix.texi: Document them.
* gnu/local.mk: Add gnu/home/services/pm.scm.
 2022-10-04 17:04:45 +04:00
Andrew Tropin
224fd038f2
doc: Mention network mask in network-route. 
* doc/guix.texi (Networking Setup): Mention network mask in network-route.
 2022-10-04 16:51:22 +04:00
Andrew Tropin
64213a0b66
deploy: Fix error message. 
* guix/scripts/deploy.scm (guix-deploy): Fix error message.
 2022-10-04 16:46:33 +04:00
Timotej Lazar
ba84c8c448
gnu: augustus: Update to 3.2.0. 
* gnu/packages/games.scm (augustus): Update to 3.2.0.
[inputs]: Add expat.
[snippet]: Unbundle it. Drop trailing #t.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:43 +02:00
jgart
31e19fd874
gnu: emacs-lsp-mode: Update to 26c4d3e. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 26c4d3e.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:43 +02:00
Michael Rohleder
7e9534150b
gnu: emacs-nov-el: Update to 0.4.0 and use gexps. 
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.4.0.
[arguments]: Use gexps.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:42 +02:00
Nicolas Goaziou
df5a021f66
gnu: emacs-modus-themes: Update to 2.7.1. 
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.7.1.
 2022-10-04 13:37:42 +02:00
Nicolas Goaziou
5e8221822e
gnu: emacs-org-mime: Update to 0.3.2. 
* gnu/packages/emacs-xyz.scm (emacs-org-mime): Update to 0.3.2.
 2022-10-04 13:37:42 +02:00
kiasoc5
fd7c34f2bf
gnu: Add emacs-circadian. 
* gnu/packages/emacs-xyz.scm (emacs-circadian): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-10-04 13:37:41 +02:00
Ricardo Wurmus
17134b9ec1
gnu: r-tximeta: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
94693d1980
gnu: r-bionero: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2.
[propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
202fd44ca0
gnu: r-biodb: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
87c097631f
gnu: r-biocdockermanager: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
6bf59194a6
gnu: r-basilisk: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
2e7872f6c9
gnu: r-bgeecall: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
869b1f9f5c
gnu: r-pathview: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1.
 2022-10-03 19:08:09 +02:00
Ricardo Wurmus
547d4670e7
gnu: r-delayedmatrixstats: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
cc719399c9
gnu: r-scran: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
1527d2e9df
gnu: r-scuttle: Update to 1.6.3. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
d66a466909
gnu: r-hdf5array: Update to 1.24.2. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
78ff15ae42
gnu: r-biocpkgtools: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
9af834ad37
gnu: r-biocviews: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
8441c1f9ea
gnu: r-bioccheck: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
e30b2aeaa2
gnu: r-cytoml: Update to 2.8.1. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
10c006c21d
gnu: r-opencyto: Update to 2.8.4. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
bceed10243
gnu: r-flowstats: Update to 4.8.2. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
eed76ad91a
gnu: r-flowviz: Update to 1.60.2. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
f82d20caae
gnu: r-ggcyto: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
1c3750c9ea
gnu: r-ncdfflow: Update to 2.42.1. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1.
 2022-10-03 19:08:08 +02:00
Ricardo Wurmus
23e42e77d4
gnu: r-rsubread: Update to 2.10.5. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
597106f234
gnu: r-rgadem: Update to 2.44.1. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
83f0c1a39d
gnu: r-enrichplot: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
842431a036
gnu: r-dose: Update to 3.22.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
2b4a7fa22e
gnu: r-residualmatrix: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
1cb30ba714
gnu: r-ggtree: Update to 3.4.4. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.4.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
a047448aad
gnu: r-treeio: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.2.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
41f029c12a
gnu: r-scaledmatrix: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.1.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
e581479be8
gnu: r-diffbind: Update to 3.6.4. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.4.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
309cfcedca
gnu: r-zellkonverter: Update to 1.6.5. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.5.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
039d894b9d
gnu: r-limma: Update to 3.52.4. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.4.
 2022-10-03 19:08:07 +02:00
Ricardo Wurmus
a16c87fae1
gnu: r-genomicfeatures: Update to 1.48.4. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.4.
 2022-10-03 19:08:06 +02:00
Ricardo Wurmus
a15ad5ebe3
gnu: r-genomeinfodb: Update to 1.32.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.4.
 2022-10-03 19:08:06 +02:00
Ricardo Wurmus
ba6a3e7d39
gnu: r-gage: Update to 2.46.1. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.1.
 2022-10-03 19:08:06 +02:00
Ricardo Wurmus
c82320aa21
gnu: r-complexheatmap: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.1.
 2022-10-03 19:08:06 +02:00
Ricardo Wurmus
038eeeaf2a
gnu: r-chipseeker: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.1.
[propagated-inputs]: Add r-ggvenndiagram.
 2022-10-03 19:08:06 +02:00
Ricardo Wurmus
15243c2f84
gnu: r-biostrings: Update to 2.64.1. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.1.
 2022-10-03 19:08:06 +02:00
Ricardo Wurmus
29a947216c
gnu: r-annotationforge: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.1.
 2022-10-03 19:08:06 +02:00
Ricardo Wurmus
96b560ac8b
gnu: r-dearseq: Update to 1.8.4. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.4.
 2022-10-03 19:08:03 +02:00