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7119 commits

Author SHA1 Message Date
Ben Woodcroft
39dc0eb502 gnu: Add ruby-minitest-focus. 
* gnu/packages/ruby.scm (ruby-minitest-focus): New variable.
 2016-01-28 00:08:32 +10:00
Ben Woodcroft
8092e33376 gnu: Add ruby-turn. 
* gnu/packages/ruby.scm (ruby-turn): New variable.
 2016-01-28 00:08:32 +10:00
Efraim Flashner
f66842dccc gnu: Add aria2. 
* gnu/packages/bittorrent.scm (aria2): New variable.
 2016-01-27 14:39:31 +02:00
Efraim Flashner
cd44f1c1b0 gnu: c-ares: Move to adns.scm. 
* gnu/packages/aria2.scm (c-ares): Move to...
* gnu/packages/adns.scm (c-ares): ... here.
* gnu/packages/aria2.scm: Remove file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove aria2.scm.
 2016-01-27 14:13:45 +02:00
Andreas Enge
bb2120cd1d gnu: libressl: Update to 2.2.5. 
* gnu/packages/tls.scm (libressl): Update to 2.2.5.
 2016-01-26 21:40:35 +01:00
Leo Famulari
7432386adb gnu: nginx: Update to 1.8.1 [fixes CVE-2016-{0742,0746,0747}]. 
* gnu/packages/web.scm (nginx): Update to 1.8.1.
 2016-01-26 15:27:58 -05:00
Ricardo Wurmus
61eecd71cc gnu: alsa-modular-synth: Update to 2.1.2. 
* gnu/packages/audio.scm (alsa-modular-synth): Update to 2.1.2.
 2016-01-26 18:46:54 +01:00
Ben Woodcroft
edf8caae6d gnu: Add ruby-ttfunk. 
* gnu/packages/ruby.scm (ruby-ttfunk): New variable.
 2016-01-26 16:27:40 +10:00
Ben Woodcroft
acb6be4298 gnu: Add ruby-ascii85. 
* gnu/packages/ruby.scm (ruby-ascii85): New variable.
 2016-01-26 16:25:11 +10:00
Ben Woodcroft
f3e085a8d5 gnu: Add ruby-afm. 
* gnu/packages/ruby.scm (ruby-afm): New variable.
 2016-01-26 16:22:17 +10:00
Ben Woodcroft
1f1d71e09f gnu: Add ruby-rc4. 
* gnu/packages/ruby.scm (ruby-rc4): New variable.
 2016-01-26 16:21:05 +10:00
Ben Woodcroft
72ccbfe314 gnu: Add ruby-hashery. 
* gnu/packages/ruby.scm (ruby-hashery): New variable.
 2016-01-26 16:19:41 +10:00
Ben Woodcroft
0832804ed5 gnu: Add ruby-rubytest-cli. 
* gnu/packages/ruby.scm (ruby-rubytest-cli): New variable.
 2016-01-26 16:17:01 +10:00
Ben Woodcroft
78bb471f37 gnu: Add ruby-lemon. 
* gnu/packages/ruby.scm (ruby-lemon): New variable.
 2016-01-26 16:15:24 +10:00
Ben Woodcroft
9273ee8f44 gnu: Add ruby-ae. 
* gnu/packages/ruby.scm (ruby-ae): New variable.
 2016-01-26 16:11:49 +10:00
Ben Woodcroft
120fc74b21 gnu: Add ruby-qed. 
* gnu/packages/ruby.scm (ruby-qed): New variable.
 2016-01-26 16:06:10 +10:00
Ben Woodcroft
90fcedf220 gnu: Add ruby-brass. 
* gnu/packages/ruby.scm (ruby-brass): New variable.
 2016-01-26 16:02:15 +10:00
Ben Woodcroft
7c8131c76b gnu: Add ruby-rubytest. 
* gnu/packages/ruby.scm (ruby-rubytest): New variable.
 2016-01-26 15:59:39 +10:00
Ben Woodcroft
a78d62f432 gnu: sra-tools: Update to 2.5.7. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.7.
 2016-01-26 10:59:13 +10:00
Ben Woodcroft
fe91666b79 gnu: ncbi-vdb: Update to 2.5.7. 
gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.7.
 2016-01-26 10:59:13 +10:00
Ben Woodcroft
d3b39bc231 gnu: ngs-sdk: Update to 1.2.3. 
gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.3.
 2016-01-26 10:59:13 +10:00
Alex Kost
0833d0c025 gnu: aspell-dict-en: Update to 2016.01.19-0. 
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.01.19-0.
 2016-01-25 22:11:47 +03:00
Efraim Flashner
8581f4c195 gnu: Add python-efl. 
* gnu/packages/enlightenment.scm (python-efl, python2-efl): New variables.
 2016-01-25 11:41:23 +02:00
Efraim Flashner
2259442b15 gnu: cmocka: New variable. 
* gnu/packages/check.scm (cmocka): New variable.
 2016-01-25 11:39:42 +02:00
Ben Woodcroft
23f3cbb8de gnu: Add pixz. 
* gnu/packages/compression.scm (pixz): New variable.
 2016-01-25 18:45:33 +10:00
Ludovic Courtès
f6afc48008 gnu: grue-hunter: Use 'https' URL. 
* gnu/packages/grue-hunter.scm (grue-hunter): Use 'https' URL.
 2016-01-25 00:11:22 +01:00
Ben Woodcroft
bcadaf0050 gnu: Add sortmerna. 
* gnu/packages/bioinformatics.scm (sortmerna): New variable.
 2016-01-25 08:35:11 +10:00
Andreas Enge
447f3ae7c1 gnu: calibre: Update to 2.49.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.49.0.
 2016-01-24 20:12:05 +01:00
Ricardo Wurmus
541ed7b030 gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3. 
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
  building libstdc++-v3 and enable building C++ compiler.
 2016-01-24 14:25:20 +01:00
Ricardo Wurmus
a763ce7da9 gnu: Add Qtractor. 
* gnu/packages/music.scm (qtractor): New variable.
 2016-01-24 14:20:52 +01:00
Ricardo Wurmus
8ddc5d5723 gnu: yoshimi: Update to 1.3.8.2. 
* gnu/packages/music.scm (yoshimi): Update to 1.3.8.2.
 2016-01-24 14:19:29 +01:00
Efraim Flashner
6b6a62dd05 gnu: privoxy: Update to 3.0.24. 
* gnu/packages/tor.scm (privoxy): Update to 3.0.24.
 2016-01-24 09:20:55 +02:00
Efraim Flashner
be866fb13e gnu: tor: Update to 0.2.7.6. 
* gnu/packages/tor.scm (tor): Update to 0.2.7.6.
 2016-01-24 07:21:33 +02:00
Efraim Flashner
17206f72ed gnu: myrepos: Update to 1.20160123. 
* gnu/packages/version-control.scm (myrepos): Update to 1.20160123.
 2016-01-24 07:04:05 +02:00
Efraim Flashner
4c73302739 gnu: nano: Update to 2.5.1. 
* gnu/packages/nano.scm (nano): Update to 2.5.1.
 2016-01-24 06:46:01 +02:00
Mark H Weaver
c5184468f5 build: container: Make 'unprivileged-user-namespace-supported?' more robust. 
* gnu/build/linux-container.scm (unprivileged-user-namespace-supported?): Only
  read and check the first character, to cope with a possible newline in the
  (pseudo-)file.
 2016-01-23 18:44:03 -05:00
Leo Famulari
fe17fb4a2c gnu: letsencrypt and acme: Update to 0.2.0. 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.2.0.
(acme): Update to 0.2.0.
 2016-01-23 17:39:08 -05:00
Efraim Flashner
21565719e5 gnu: claws-mail: Update to 3.13.2. 
* gnu/packages/mail.scm (claws-mail): Update to 3.13.2.
 2016-01-23 20:13:31 +02:00
Ricardo Wurmus
3a40a92c73 gnu: Add cufflinks. 
* gnu/packages/bioinformatics.scm (cufflinks): New variable.
 2016-01-23 09:15:11 +01:00
Ricardo Wurmus
94ce537eac gnu: Add TopHat. 
* gnu/packages/bioinformatics.scm (tophat): New variable.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-23 08:53:10 +01:00
Ricardo Wurmus
3062d750b4 gnu: star: Update to 2.5.1b. 
* gnu/packages/bioinformatics.scm (star): Update to 2.5.1b.
[source]: Remove bundled htslib sources and pre-built binaries.
[arguments]: Add phase "do-not-use-bundled-htslib".
[inputs]: Add "htslib".
 2016-01-23 08:40:14 +01:00
Ricardo Wurmus
c0266e8d03 gnu: star: Use "modify-phases" syntax. 
* gnu/packages/bioinformatics.scm (star)[arguments]: Use "modify-phases"
  syntax.
 2016-01-23 08:40:14 +01:00
Efraim Flashner
ebf89f134c gnu: fuse: Update to 2.9.5 [fixes CVE-2016-1233]. 
* gnu/packages/linux.scm (fuse): Update to 2.9.5.
 2016-01-22 09:00:34 +02:00
Eric Bavier
b6d937d99e gnu: american-fuzzy-lop: Update to 1.96b. 
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 1.96b.
  [arguments]: Create symbolic link to custom qemu, rather than copying.
 2016-01-21 23:54:48 -06:00
Eric Bavier
2d8211ab30 gnu: american-fuzzy-lop: Fix qemu configure flags. 
Fixes regression introduced in 06da1a6.

* gnu/packages/debug.scm (american-fuzzy-lop)[qemu]: Override inherited
  #:configure-flags.
 2016-01-21 23:54:48 -06:00
Leo Famulari
765973cd65 gnu: Add iftop. 
* gnu/packages/admin.scm (iftop): New variable.
 2016-01-21 20:21:19 -05:00
Leo Famulari
c2af02602a Revert "gnu: Add iftop." 
This reverts commit 45da8c6dd1.
 2016-01-21 20:11:21 -05:00
Leo Famulari
45da8c6dd1 gnu: Add iftop. 
* gnu/packages/admin.scm (iftop): New variable.
 2016-01-21 18:11:12 -05:00
Ludovic Courtès
6b779207ee system: grub: Search root device by label or UUID if possible. 
Fixes <http://bugs.gnu.org/22281>.
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.

* gnu/system/grub.scm (eye-candy): Add 'root-fs' parameter.  Replace
'search --file' command in the output with whatever 'grub-root-search'
returns.
(grub-root-search): New procedure.
(grub-configuration-file): Add 'store-fs' parameter.  Use
'grub-root-search' instead of hard-coded 'search --file' commands.
* gnu/system.scm (store-file-system,
operating-system-store-file-system): New procedures.
(operating-system-grub.cfg): Use it, and adjust call to
'grub-configuration-file'.
* tests/system.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
 2016-01-22 00:02:52 +01:00
Mark H Weaver
3738d8700f gnu: ffmpeg: Update to 2.8.5. 
* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
 2016-01-21 10:30:21 -05:00