Commit graph

25081 commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
36f3e1df5f
gnu: radeontop: Update to 1.1.
* gnu/packages/linux.scm (radeontop): Update to 1.1.
2018-03-27 03:26:47 +02:00
Tobias Geerinckx-Rice
d6fb32b8a0
gnu: ruby-rake: Update to 12.3.1.
* gnu/packages/ruby.scm (ruby-rake): Update to 12.3.1.
2018-03-27 03:26:46 +02:00
Tobias Geerinckx-Rice
81a2217120
gnu: ruby-asciidoctor: Update to 1.5.6.2.
* gnu/packages/ruby.scm (ruby-asciidoctor): Update to 1.5.6.2.
2018-03-27 03:26:46 +02:00
Tobias Geerinckx-Rice
ef803aa52c
gnu: python-plotly: Update to 2.4.1.
* gnu/packages/graph.scm (python-plotly): Update to 2.4.1.
2018-03-27 03:26:46 +02:00
Tobias Geerinckx-Rice
65ff6ab92c
gnu: python-django-crispy-forms: Update to 1.7.2.
* gnu/packages/django.scm (python-django-crispy-forms): Update to 1.7.2.
2018-03-27 03:26:46 +02:00
Tobias Geerinckx-Rice
6e54870f60
gnu: r-randomforest: Update to 4.6-14.
* gnu/packages/statistics.scm (r-randomforest): Update to 4.6-14.
2018-03-27 03:26:45 +02:00
Tobias Geerinckx-Rice
917378f787
gnu: r-blob: Update to 1.1.1.
* gnu/packages/statistics.scm (r-blob): Update to 1.1.1.
[propagated-inputs]: Add r-prettyunits.
2018-03-27 03:26:45 +02:00
Tobias Geerinckx-Rice
5000283b5d
gnu: r-servr: Update to 0.9.
* gnu/packages/web.scm (r-servr): Update to 0.9.
[propagated-inputs]: Add r-xfun.
2018-03-27 03:26:45 +02:00
Tobias Geerinckx-Rice
dadc8610e0
gnu: vis: Update to 0.5.
* gnu/packages/text-editors.scm (vis): Update to 0.5.
2018-03-27 03:26:45 +02:00
Leo Famulari
86bd0f797f
gnu: libreoffice: Update to 5.4.6.2.
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.4.6.2.
2018-03-26 19:50:46 -04:00
Vasile Dumitrascu
faef71f926
gnu: hplip: Update to 3.18.3.
* gnu/packages/cups.scm (hplip): Update to 3.18.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-03-26 19:50:43 -04:00
Arun Isaac
4769ef0074
gnu: Add font-lohit.
* gnu/packages/fonts.scm (font-lohit): New variable.
2018-03-27 01:35:05 +05:30
Oleg Pykhalov
196c8b3739
gnu: translate-shell: Update to 0.9.6.7.
* gnu/packages/patches/translate-shell-fix-curl-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.7.
[source](patches): Add it.  [home-page]: Append slash.
2018-03-26 22:47:16 +03:00
Oleg Pykhalov
e5e5eb1fcf
gnu: Add twitchy.
* gnu/packages/video.scm (twitchy): New public variable.
2018-03-26 22:47:16 +03:00
Oleg Pykhalov
e0de023eae
gnu: Add perl-uri-escape.
* gnu/packages/perl-web.scm (perl-uri-escape): New public variable.
2018-03-26 22:47:16 +03:00
Charlie Ritter
786d3de297
gnu: Add r-tidyverse.
* gnu/packages/cran.scm (r-tidyverse): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:58 +02:00
Charlie Ritter
8a1ef6ac25
gnu: Add r-rvest.
* gnu/packages/cran.scm (r-rvest): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:58 +02:00
Charlie Ritter
81a9d4a422
gnu: Add r-selectr.
* gnu/packages/cran.scm (r-selectr): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:58 +02:00
Charlie Ritter
948740b08a
gnu: Add r-reprex.
* gnu/packages/cran.scm (r-reprex): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:58 +02:00
Charlie Ritter
10487c30bc
gnu: Add r-callr.
* gnu/packages/cran.scm (r-callr): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:57 +02:00
Charlie Ritter
d7637e5ed8
gnu: Add r-readxl.
* gnu/packages/cran.scm (r-readxl): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:57 +02:00
Charlie Ritter
9a91c925f2
gnu: Add r-modelr.
* gnu/packages/cran.scm (r-modelr): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:57 +02:00
Charlie Ritter
d2a507efd9
gnu: Add r-haven.
* gnu/packages/cran.scm (r-haven): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 21:43:57 +02:00
Sandeep Subramanian
96e223621f
gnu: Add r-arules.
* gnu/packages/cran.scm (r-arules): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-03-26 14:58:25 -04:00
Christopher Baines
376015c35b
gnu: emacs-robe: Include the lib directory in the output.
This contains some Ruby code that needs to be accessible to use robe.

* gnu/packages/emacs.scm (emacs-robe)[arguments]: Include the lib directory,
in addition to the %default-includes.
2018-03-26 19:52:06 +01:00
Christopher Baines
158943f228
gnu: emacs-minitest: Switch source to the git repository.
The 0.8.0 release was over 3 years ago, and there have been ~50 commits since.

* gnu/packages/emacs.scm (emacs-minitest): Wrap with let, and change source to
the git repository.
2018-03-26 19:52:06 +01:00
Ricardo Wurmus
5b5dbece6b
gnu: ghc-cryptonite: Update to 0.25.
* gnu/packages/haskell-crypto.scm (ghc-cryptonite): Update to 0.25.
[inputs]: Add ghc-basement.
2018-03-26 20:41:50 +02:00
Ricardo Wurmus
150e8e25f5
gnu: ghc-memory: Update to 0.14.16.
* gnu/packages/haskell.scm (ghc-memory): Update to 0.14.16.
[inputs]: Add ghc-basement and ghc-foundation.
2018-03-26 20:41:50 +02:00
Ricardo Wurmus
635cc8fef6
gnu: Add ghc-foundation.
* gnu/packages/haskell.scm (ghc-foundation): New variable.
2018-03-26 20:41:50 +02:00
Ricardo Wurmus
da5fe92a0b
gnu: Add ghc-basement.
* gnu/packages/haskell.scm (ghc-basement): New variable.
2018-03-26 20:41:50 +02:00
Feng Shu
03a34d5412
gnu: emacs-exwm-x: Update to 1.8.1.
* gnu/packages/emacs.scm (emacs-exwm-x): Update to 1.8.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 20:06:51 +02:00
Feng Shu
9f2a58a01a
gnu: emacs-exwm: Update to 0.18.
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.18.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 20:06:46 +02:00
Feng Shu
aaa31d1b00
gnu: emacs-xelb: Update to 0.14.
* gnu/packages/emacs.scm (emacs-xelb): Update to 0.14.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 20:06:37 +02:00
Nils Gillmann
0741932bc4
gnu: libressl: Update to 2.7.1.
* gnu/packages/tls.scm (libressl): Update to 2.7.1.

Signed-off-by: Nils Gillmann <ng0@n0.is>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-26 19:46:07 +02:00
Ludovic Courtès
3c1ae2a637
gnu: perl-image-exiftool: Update to 10.80.
* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.80.
2018-03-26 18:24:55 +02:00
Ludovic Courtès
5ccd8f4061
gnu: magit-svn: Update to 2.2.0.
* gnu/packages/emacs.scm (magit-svn): Update to 2.2.0.
[propagated-inputs]: Add WITH-EDITOR.
[arguments]: Add WITH-EDITOR to EMACSLOADPATH.
2018-03-26 18:24:55 +02:00
Ludovic Courtès
a271096b93
gnu: evince: Update to 3.28.0.
* gnu/packages/gnome.scm (evince): Update to 3.28.0.
2018-03-26 18:24:55 +02:00
Ludovic Courtès
323991339e
gnu: hwloc@1: Update to 1.11.10.
* gnu/packages/mpi.scm (hwloc): Update to 1.11.10.
2018-03-26 18:24:55 +02:00
Ludovic Courtès
d2c036557a
gnu: hwloc@2: Update to 2.0.1.
* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1.
[source]: Remove 'patches'.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-03-26 18:24:55 +02:00
Efraim Flashner
bab9793f54
gnu: classpath: Add aarch64-linux support.
* gnu/packages/java.scm (classpath-bootstrap, classpath-0.99)[source]:
Add patch.
* gnu/packages/patches/classpath-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-03-26 12:21:33 +03:00
Mark H Weaver
5dc8f5de0c
gnu: linux-libre: Update to 4.15.13.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.13.
(%linux-libre-hash): Update hash.
2018-03-26 05:00:38 -04:00
Mark H Weaver
27d528d81a
gnu: linux-libre@4.14: Update to 4.14.30.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.30.
(%linux-libre-4.14-hash): Update hash.
2018-03-26 04:59:30 -04:00
Mark H Weaver
af55816de5
gnu: linux-libre@4.9: Update to 4.9.90.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.90.
2018-03-26 04:58:55 -04:00
Mark H Weaver
7ebe7d85c0
gnu: linux-libre@4.4: Update to 4.4.124.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.124.
2018-03-26 04:58:09 -04:00
Ludovic Courtès
e784e2561e
gnu: geeqie: Update to 1.4.
* gnu/packages/image-viewers.scm (geeqie): Update to 1.4.
[arguments]: In 'autogen' phase, create ChangeLog{,.html}.
2018-03-26 09:54:46 +02:00
Ludovic Courtès
6ae0fd212a
gnu: emacs-flycheck: Update to 31.
* gnu/packages/emacs.scm (flycheck): Update to 31.
2018-03-26 09:43:19 +02:00
Ludovic Courtès
66eb91be9c
gnu: pius: Update to 2.2.6.
* gnu/packages/gnupg.scm (pius): Update to 2.2.6.
2018-03-26 09:42:43 +02:00
Ludovic Courtès
07a049ceb1
gnu: usbredir: Build without '-Werror'.
Fixes build failure introduced in
58ee8a94a9, where compilation would fail
with:

  usbredirhost.c: In function ?usbredirhost_open_full?:
  usbredirhost.c:749:5: error: ?libusb_set_debug? is deprecated: Use libusb_set_option instead [-Werror=deprecated-declarations]
       libusb_set_debug(host->ctx, host->verbose);
       ^
  In file included from usbredirhost.h:24:0,
		   from usbredirhost.c:31:
  /gnu/store/j8hzc465xy33cjfcq3wv39szxia4xrzv-libusb-1.0.22/include/libusb-1.0/libusb.h:1300:18: note: declared here
   void LIBUSB_CALL libusb_set_debug(libusb_context *ctx, int level);
		    ^
  cc1: all warnings being treated as errors

* gnu/packages/spice.scm (usbredir)[arguments]: In 'autogen' phase,
remove '-Werror' from configure.ac.
2018-03-26 09:38:29 +02:00
Ricardo Wurmus
51602aac8e
gnu: ecj-javac-wrapper: Fix reference to glibj and tools.zip.
* gnu/packages/java.scm (ecj-javac-wrapper)[arguments]: Fix references to
glibj and tools.zip.
2018-03-26 08:05:24 +02:00
Ricardo Wurmus
40e3a197f9
gnu: classpath-jamvm-wrappers: Run JamVM with conservative options.
* gnu/packages/java.scm (classpath-jamvm-wrappers)[arguments]: Pass extra
options to JamVM.
2018-03-26 08:05:24 +02:00
Ludovic Courtès
ce5964074a
gnu: hwloc@1: Update to 1.11.9.
* gnu/packages/mpi.scm (hwloc): Update to 1.11.9.
2018-03-26 00:15:52 +02:00
Ricardo Wurmus
ae0a5a7edc
gnu: ecj-javac-wrapper: Run JamVM with conservative options.
* gnu/packages/java.scm (ecj-javac-wrapper)[arguments]: Add options to jamvm
invocation.
2018-03-26 00:14:44 +02:00
Ricardo Wurmus
d4fd4c3a7b
gnu: ant-bootstrap: Make build more reliable.
* gnu/packages/java.scm (ant-bootstrap)[arguments]: Remove bootstrap phase;
create HOME/.ant.properties; pass options to JamVM.
2018-03-26 00:04:53 +02:00
Marius Bakke
7240b4a989
gnu: newsboat: Update to 2.11.
* gnu/packages/syndication.scm (newsboat): Update to 2.11.
[inputs]: Change from JSON-C-0.12 to JSON-C.
[native-search-paths]: New field.
2018-03-25 22:57:19 +02:00
Marius Bakke
171e84d63d
gnu: httpd: Update to 2.4.33 [security fixes].
This fixes CVE-2017-15710, CVE-2017-15715, CVE-2018-1283, CVE-2018-1301,
CVE-2018-1302, CVE-2018-1303, and CVE-2018-1312.

* gnu/packages/web.scm (httpd): Update to 2.4.33.
2018-03-25 22:43:39 +02:00
Ricardo Wurmus
269fb7d310
gnu: Remove sablevm and sablevm-classpath, update comments.
* gnu/packages/java.scm (sablevm, sablevm-classpath): Remove variables.
2018-03-25 21:41:27 +02:00
Ricardo Wurmus
b5a0d42708
gnu: Remove ecj-javac-on-jamvm-wrapper.
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper): Remove variable.
(classpath-devel)[native-inputs]: Use ecj-javac-wrapper instead.
(jamvm)[inputs]: Use ecj-javac-wrapper instead.
(ecj-javac-on-jamvm-wrapper-final): Rename...
(ecj-javac-wrapper-final): ...to this.
(icedtea-6)[native-inputs]: Use "ecj-javac-wrapper-final" instead of
'ecj-javac-on-jamvm-wrapper-final".
[arguments]: Use jamvm's rt.jar.
2018-03-25 21:41:27 +02:00
Ricardo Wurmus
c98d7a66cc
gnu: classpath-jamvm-wrappers: Use classpath-0.99.
* gnu/packages/java.scm (classpath-jamvm-wrappers): Inherit from
classpath-0.99.
[native-inputs]: Replace "jamvm-bootstrap" with "jamvm-1-bootstrap"; replace
"classpath-on-sablevm" with "classpath-0.99".
2018-03-25 21:41:27 +02:00
Ricardo Wurmus
58d2b13544
gnu: Remove jamvm-bootstrap.
* gnu/packages/java.scm (jamvm-bootstrap): Remove variable.
(classpath-devel)[native-inputs]: Use "jamvm-1-bootstrap" instead of
"jamvm-bootstrap".
(jamvm): Inherit from jamvm-1-bootstrap.
2018-03-25 21:41:27 +02:00
Ricardo Wurmus
8778da03c8
gnu: Replace classpath-on-sablevm with classpath-0.99.
* gnu/packages/java.scm (classpath-on-sablevm): Replace with...
(classpath-0.99): ...this new variable.
(classpath-devel): Inherit from classpath-0.99.
2018-03-25 21:41:27 +02:00
Ricardo Wurmus
c4f06c1164
gnu: ecj-javac-wrapper: Do not use sablevm.
* gnu/packages/java.scm (ecj-javac-wrapper)[native-inputs]: Remove sablevm and
sablevm-classpath; add jamvm-1-bootstrap and classpath-bootstrap.
[arguments]: Simplify builder now that only jamvm is used.
2018-03-25 21:41:27 +02:00
Ricardo Wurmus
6c775dc644
gnu: ecj-bootstrap: Build with JamVM 1.5.1 and jikes.
* gnu/packages/java.scm (ecj-bootstrap)[native-inputs]: Replace "sablevm" with
"jikes" and "jamvm-1-bootstrap".
[arguments]: Adjust accordingly.
2018-03-25 21:41:27 +02:00
Ricardo Wurmus
ff4d9fdf8c
gnu: ant-bootstrap: Update to 1.8.4.
* gnu/packages/java.scm (ant-bootstrap): Update to 1.8.4.
2018-03-25 21:41:27 +02:00
Ricardo Wurmus
aa432388da
gnu: ant-bootstrap: Build with JamVM 1.5.1.
* gnu/packages/java.scm (ant-bootstrap)[native-inputs]: Replace sablevm with
jamvm-1-bootstrap.
[arguments]: Adjust accordingly.
2018-03-25 21:41:26 +02:00
Ricardo Wurmus
063629aa3e
gnu: Add jamvm-1-bootstrap.
* gnu/packages/java.scm (jamvm-1-bootstrap): New variable.
2018-03-25 21:41:26 +02:00
Ricardo Wurmus
45f762ee96
gnu: Add classpath-bootstrap.
* gnu/packages/java.scm (classpath-bootstrap): New variable.
2018-03-25 21:41:26 +02:00
Tobias Geerinckx-Rice
a667d20e9a
gnu: libmtp: Update to 1.1.15.
* gnu/packages/libusb.scm (libmtp): Update to 1.1.15.
2018-03-25 20:01:14 +02:00
Tobias Geerinckx-Rice
58ee8a94a9
gnu: libusb: Update to 1.0.22.
* gnu/packages/libusb.scm (libusb): Update to 1.0.22.
2018-03-25 20:01:14 +02:00
Tobias Geerinckx-Rice
1dc3109707
gnu: scotch: Use predictable source URI.
* gnu/packages/maths.scm (scotch)[source]: Use predictable URI.
2018-03-25 20:01:02 +02:00
Tobias Geerinckx-Rice
bbc55a7dfa
gnu: mate-themes: Update to 3.22.15.
* gnu/packages/mate.scm (mate-themes): Update to 3.22.15.
2018-03-25 20:01:01 +02:00
Tobias Geerinckx-Rice
5a5b866324
gnu: filezilla: Update to 3.31.0.
* gnu/packages/ftp.scm (filezilla): Update to 3.31.0.
2018-03-25 20:01:01 +02:00
Tobias Geerinckx-Rice
5b367a1ade
gnu: hlint: Update to 2.1.1.
* gnu/packages/haskell.scm (hlint): Update to 2.1.1.
2018-03-25 20:01:01 +02:00
Tobias Geerinckx-Rice
326654e42b
gnu: flashrom: Support libusb versions >1.0.21.
* gnu/packages/flashing-tools.scm (flashrom)[arguments]: Override CFLAGS
in #:make-flags.
2018-03-25 20:01:01 +02:00
Tobias Geerinckx-Rice
883fa31088
gnu: python-pyld: Update to 1.0.3.
* gnu/packages/python.scm (python-pyld): Update to 1.0.3.
[arguments]: Run the new test suite.
2018-03-25 20:01:00 +02:00
Tobias Geerinckx-Rice
7112b2f148
gnu: openlibm: Update to 0.5.5.
* gnu/packages/maths.scm (openlibm): Update to 0.5.5.
2018-03-25 20:01:00 +02:00
Danny Milosavljevic
9b36e3bf25
gnu: Add python-parted.
* gnu/packages/disk.scm (python-parted, python2-parted): New variables.
2018-03-25 19:26:27 +02:00
Danny Milosavljevic
a4e7215df2
gnu: Add python2-ipy.
* gnu/packages/networking.scm (python2-ipy): New variable.
2018-03-25 18:51:03 +02:00
Danny Milosavljevic
c35d9830ce
gnu: fc-host-tools: Update to version 8.
* gnu/packages/embedded.scm (fc-host-tools): Update to version 8.
2018-03-25 17:02:10 +02:00
Danny Milosavljevic
6cf2ac3cd6
gnu: Add pure.
* gnu/packages/pure.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-25 17:02:01 +02:00
Danny Milosavljevic
1679923a2c
gnu: Add pan.
* gnu/packages/mail.scm (pan): New variable.
2018-03-25 17:01:34 +02:00
Danny Milosavljevic
cd49e4789a
gnu: gtkspell3: Add enchant.
* gnu/packages/gtk.scm (gtkspell3)[native-inputs]: Add enchant.
2018-03-25 17:00:37 +02:00
Efraim Flashner
4bd2e2a5b0
gnu: clisp: Update license.
License clarified with upstream.

* gnu/packages/lisp.scm (clisp)[license]: Correct license to gpl2+.
2018-03-25 09:40:11 +03:00
Efraim Flashner
be828bc40a
gnu: clisp: Remove ineffective 'remove-timestamp' phase.
* gnu/packages/lisp.scm (clisp)[arguments]: Remove 'remove-timestamps'
phase.
2018-03-25 09:40:05 +03:00
Tobias Geerinckx-Rice
c77fb2d658
gnu: libdvdcss: Update to 1.4.2.
* gnu/packages/video.scm (libdvdcss): Update to 1.4.2.
2018-03-25 00:36:36 +01:00
Tobias Geerinckx-Rice
d4297f71c6
gnu: gexiv2: Update to 0.10.8.
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.8.
2018-03-25 00:36:36 +01:00
Tobias Geerinckx-Rice
a26040c5ee
gnu: ruby-ffi: Update to 1.9.23.
* gnu/packages/libffi.scm (ruby-ffi): Update to 1.9.23.
2018-03-25 00:36:35 +01:00
Tobias Geerinckx-Rice
a2b9cfa547
gnu: clutter-gst: Update to 3.0.26.
* gnu/packages/gnome.scm (clutter-gst): Update to 3.0.26.
2018-03-25 00:36:35 +01:00
Tobias Geerinckx-Rice
4bd76eac11
gnu: python-graphviz: Update to 0.8.2.
* gnu/packages/graphviz.scm (python-graphviz): Update to 0.8.2.
2018-03-25 00:36:35 +01:00
Tobias Geerinckx-Rice
c7da85104b
gnu: gnome-autoar: Update to 0.2.3.
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.2.3.
2018-03-25 00:36:35 +01:00
Tobias Geerinckx-Rice
4541072c11
gnu: libstrophe: Update to 0.9.2.
* gnu/packages/messaging.scm (libstrophe): Update to 0.9.2.
2018-03-25 00:36:34 +01:00
Tobias Geerinckx-Rice
1635cb5083
gnu: hunspell: Use INVOKE.
* gnu/packages/libreoffice.scm (hunspell)[arguments]: Substitute INVOKE
for SYSTEM* and end phase with explicit #t.
2018-03-25 00:36:34 +01:00
Tobias Geerinckx-Rice
ef82b71c0f
gnu: hunspell: Update to 1.6.2.
* gnu/packages/libreoffice.scm (hunspell): Update to 1.6.2.
2018-03-25 00:36:34 +01:00
Tobias Geerinckx-Rice
1a52206e60
gnu: python-ly: Use PYPI-URI.
* gnu/packages/python.scm (python-ly)[source]: Use PYPI-URI.
2018-03-25 00:36:33 +01:00
Tobias Geerinckx-Rice
36828576b3
gnu: gnome-klotski: Update to 3.22.3.
* gnu/packages/gnome.scm (gnome-klotski): Update to 3.22.3.
2018-03-25 00:36:33 +01:00
Tobias Geerinckx-Rice
491883a6ea
gnu: aisleriot: Update to 3.22.5.
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.5.
2018-03-25 00:36:33 +01:00
Tobias Geerinckx-Rice
faf44e3810
gnu: neomutt: Update to 20180323.
* gnu/packages/mail.scm (neomutt): Update to 20180323.
2018-03-25 00:36:32 +01:00
Tobias Geerinckx-Rice
e0bee0de70
gnu: ceres-solver: Update to 1.14.0.
* gnu/packages/maths.scm (ceres-solver): Update to 1.14.0.
2018-03-25 00:36:32 +01:00
Tobias Geerinckx-Rice
4fbcc21dc3
gnu: python-gitpython: Update to 2.1.1.9.
* gnu/packages/version-control.scm (python-gitpython): Update to 2.1.9.
2018-03-25 00:36:32 +01:00
Tobias Geerinckx-Rice
4349f3d0bd
gnu: yoshimi: Update to 1.5.7.
* gnu/packages/music.scm (yoshimi): Update to 1.5.7.
2018-03-25 00:36:32 +01:00
Tobias Geerinckx-Rice
904c3a4e99
gnu: r-annotate: Update to 1.56.2.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.2.
2018-03-25 00:36:31 +01:00
Tobias Geerinckx-Rice
749d800850
gnu: perl-text-simpletable: Update to 2.04.
* gnu/packages/perl.scm (perl-text-simpletable): Update to 2.04.
2018-03-25 00:36:31 +01:00
Tobias Geerinckx-Rice
810cd037a0
gnu: emacs-mmm-mode: Update to 0.5.5.
* gnu/packages/emacs.scm (emacs-mmm-mode): Update to 0.5.5.
2018-03-25 00:36:31 +01:00
Tobias Geerinckx-Rice
5660325eb7
gnu: autossh: Update to 1.4f.
* gnu/packages/ssh.scm (autossh): Update to 1.4f.
2018-03-25 00:36:30 +01:00
Tobias Geerinckx-Rice
eb762cc70c
gnu: perl-www-mechanize: Update to 1.88.
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.88.
2018-03-25 00:36:30 +01:00
Tobias Geerinckx-Rice
929e2d9f98
gnu: links: Update to 2.15.
* gnu/packages/web-browsers.scm (links): Update to 2.15.
[source]: Remove patch for fixed CVE.
* gnu/packages/patches/links-CVE-2017-11114.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-03-25 00:36:30 +01:00
Ludovic Courtès
e087dad3ab
gnu: less: Update to 530.
* gnu/packages/less.scm (less): Update to 530.
2018-03-25 00:29:59 +01:00
Ludovic Courtès
c91e0f1ab3
gnu: cuirass: Update to 326264c.
* gnu/packages/ci.scm (cuirass): Update to 326264c.
2018-03-25 00:19:24 +01:00
Ricardo Wurmus
4d4a5698ec
gnu: sablevm: Do not change GC, just disable stripping.
* gnu/packages/java.scm (sablevm)[arguments]: Disable stripping; do not play
with GC settings as they have no reliable effect on build success.
2018-03-25 00:14:30 +01:00
Ricardo Wurmus
f15e2ee4e8
gnu: sablevm: Use a different GC implementation.
This is an attempt to fix a segfault when building ant-bootstrap.

* gnu/packages/java.scm (sablevm)[arguments]: Use gencopy GC implementation.
2018-03-24 23:00:03 +01:00
Ricardo Wurmus
15b8b5deca
gnu: sablevm-classpath: Remove unnecessary inputs.
* gnu/packages/java.scm (sablevm-classpath)[inputs]: Remove.
2018-03-24 23:00:03 +01:00
Efraim Flashner
29be6cfb20
gnu: Add u-boot-pine64-plus.
* gnu/packages/bootloaders.scm (u-boot-pine64-plus): New variable.
2018-03-24 22:15:12 +03:00
Efraim Flashner
9a1c4a6cb8
gnu: make-u-boot-package: Install 'itb' and 'dtb' files also.
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]: Add
'itb' and 'dtb' files to the files installed during custom 'install phase.
2018-03-24 22:15:11 +03:00
Efraim Flashner
ecff374e1c
gnu: arm-trusted-firmware-pine64-plus: New variable.
* gnu/packages/firmware.scm (arm-trusted-firmware-pine64-plus): New
variable.
2018-03-24 22:15:11 +03:00
Efraim Flashner
e9252fd11c
gnu: make-arm-trusted-firmware: New procedure.
* gnu/packages/firmware.scm (make-arm-trusted-firmware): New procedure.
2018-03-24 22:15:11 +03:00
Alex Kost
d591989b42
gnu: tvtime: Fix build.
* gnu/packages/tv.scm (tvtime)[native-inputs]: Add 'pkg-config' to avoid
compilation errors.
2018-03-24 19:36:03 +03:00
Alex Kost
1f849cba9f
gnu: dunst: Update to 1.3.1.
* gnu/packages/dunst.scm (dunst): Update to 1.3.1.
[arguments]: Add SERVICEDIR_DBUS make flag.
[inputs]: Use 'gdk-pixbuf' instead of 'gtk'.
2018-03-24 19:36:03 +03:00
Oleg Pykhalov
bba66e7a60
gnu: streamlink: Update to 0.11.0.
* gnu/packages/video.scm (streamlink): Update to 0.11.0.
[native-inputs]: Add python-urllib3.
2018-03-24 09:30:02 +03:00
Chris Marusich
a335f6fcc9
system: Add "guix system docker-image" command.
* gnu/system/vm.scm (system-docker-image): New procedure.
* guix/scripts/system.scm (system-derivation-for-action): Add a case for
  docker-image, and in that case, call system-docker-image.
  (show-help): Document docker-image.
  (guix-system): Parse arguments for docker-image.
* doc/guix.texi (Invoking guix system): Document "guix system
  docker-image".
* gnu/system/examples/docker-image.tmpl: New file.
2018-03-24 03:04:11 +01:00
Chris Marusich
8c9bf2946a
gnu: When building in a VM, share a temporary directory.
* gnu/build/vm.scm (load-in-linux-vm): Make a shared temporary directory
  available in the VM.
* gnu/system/vm.scm (%linux-vm-file-systems): Add a corresponding entry.
2018-03-24 03:04:10 +01:00
Chris Marusich
af81311b8c
vm: Allow control of deduplication in root-partition-initializer.
* gnu/build/vm.scm (root-partition-initializer): Add #:deduplicate?
  keyword argument.
2018-03-24 03:04:10 +01:00
Chris Marusich
272c070962
tests: Add tests for "guix pack".
* guix/scripts/pack.scm (bootstrap-xz): New variable.
  (%options) <--bootstrap>: New option.
  (show-help): Document the new --bootstrap option.
  (guix-pack): When --bootstrap is specified, use the bootstrap Guile,
  tar, and xz to build the pack, and do not use any profile hooks or
  locales.
* doc/guix.texi (Invoking guix pull): Document the new --bootstrap
  option.
* tests/guix-pack.sh: New file.
* Makefile.am (SH_TESTS): Add guix-pack.sh.
* gnu/packages/package-management.scm (guix) <inputs>: Add util-linux.
2018-03-24 03:04:07 +01:00
Sahithi Yarlagadda
24fa6bcac6
gnu: Add r-catdap.
* gnu/packages/cran.scm (r-catdap): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-23 21:56:39 +01:00
Leo Famulari
116c12a122
gnu: Keep Krita 3 along with Krita 4.
* gnu/packages/kde.scm (krita-3): New variable.
2018-03-23 15:42:01 -04:00
Gábor Boskovits
2cac889151
gnu: java-aqute-bnd-annotation: Update to 3.5.0.
* gnu/packages/java.scm (java-aqute-bnd-annotation): Update to 3.5.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-03-23 20:21:37 +01:00
Tobias Geerinckx-Rice
7aff5d025d
gnu: git: Update to 2.16.3.
* gnu/packages/version-control.scm (git): Update to 2.16.3.
2018-03-23 14:03:52 +01:00
Tobias Geerinckx-Rice
b1be07cf04
gnu: libgee: Update to 0.20.1.
* gnu/packages/gnome.scm (libgee): Update to 0.20.1.
2018-03-23 11:32:16 +01:00
Tobias Geerinckx-Rice
cd4c6039ea
gnu: fribidi: Update to 1.0.2.
* gnu/packages/fribidi.scm (fribidi): Update to 1.0.2.
[arguments]: Disable building documentation for now.
2018-03-23 11:32:16 +01:00
Tobias Geerinckx-Rice
ee789a411c
gnu: parallel: Update to 20180322.
* gnu/packages/parallel.scm (parallel): Update to 20180322.
2018-03-23 11:32:15 +01:00
Tobias Geerinckx-Rice
dd8237b6c3
gnu: coq-flocq: Use predictable source URI.
* gnu/packages/ocaml.scm (coq-flocq)[source]: Use predictable URI.
2018-03-23 11:32:15 +01:00
Mark H Weaver
77f2ced1a6
gnu: linux-libre@4.9: Update to 4.9.89.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.89.
2018-03-23 04:50:01 -04:00
Mark H Weaver
b06e94d310
gnu: linux-libre@4.4: Update to 4.4.123.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.123.
2018-03-23 04:49:59 -04:00
Danny Milosavljevic
ec40a0501f
gnu: Add lyx.
* gnu/packages/patches/lyx-2.2.3-fix-test.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/tex.scm (lyx): New variable.
2018-03-22 23:11:17 +01:00
Jelle Licht
282e48eae9
gnu: node: Update to 9.9.0.
* gnu/packages/node.scm (node): Update to 9.9.0.
2018-03-22 19:15:24 +01:00
Leo Famulari
5e56dfadba
gnu: krita: Update to 4.0.0.
* gnu/packages/kde.scm (krita): Update to 4.0.0.
2018-03-22 13:37:25 -04:00
Leo Famulari
10e2ee7887
gnu: darktable: Update to 2.4.2.
* gnu/packages/photo.scm (darktable): Update to 2.4.2.
2018-03-22 12:10:55 -04:00
Ricardo Wurmus
618050a126
gnu: r-bookdown: Do not propagate ghc-pandoc.
This package propagates r-rmarkdown, which propagates its own variant of
Pandoc.

* gnu/packages/bioinformatics.scm (r-bookdown)[propagated-inputs]: Remove
ghc-pandoc.
2018-03-22 17:07:15 +01:00
Marius Bakke
63c295d2f5
gnu: nginx: Update to 1.13.10.
* gnu/packages/web.scm (nginx): Update to 1.13.10.
[arguments]: Update kernel version to match glibc minimum requirement.
2018-03-22 14:40:40 +01:00
Marius Bakke
069d0b7f91
gnu: nmap: Update to 7.70.
* gnu/packages/admin.scm (nmap): Update to 7.70.
[source](snippet): End on #t.
[inputs]: Add ZLIB.
2018-03-22 14:40:40 +01:00
Marius Bakke
0e4d067f9e
gnu: talloc: Update to 2.1.12.
* gnu/packages/samba.scm (talloc): Update to 2.1.12.
2018-03-22 14:16:36 +01:00
Marius Bakke
cbcbb10a63
gnu: certbot: Update to 0.22.2.
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.2.
2018-03-22 14:14:09 +01:00
Marius Bakke
5da2a934b4
gnu: python-cryptography: Update to 2.2.1.
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.1.
2018-03-22 14:02:11 +01:00
Maxim Cournoyer
247384d069
gnu: Add supercollider.
* gnu/packages/audio.scm (supercollider): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-22 12:31:00 +01:00
Maxim Cournoyer
6f976d2880
gnu: yaml-cpp: Update to 0.6.1.
* gnu/packages/serialization.scm (yaml-cpp): Update to 0.6.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-22 12:30:46 +01:00
Maxim Cournoyer
7624300c84
gnu: Add boost-sync.
* gnu/packages/boost.scm (boost-sync): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-22 12:30:39 +01:00
Ludovic Courtès
ca5b73114f
gnu: shepherd: Update to 0.4.0.
* gnu/packages/admin.scm (shepherd): Update to 0.4.0.  Remove patches.
* gnu/packages/patches/shepherd-close-fds.patch,
gnu/packages/patches/shepherd-herd-status-sorted.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/services/admin.scm (%default-rotations): Remove
/var/log/shepherd.log.
2018-03-22 11:43:30 +01:00
Ludovic Courtès
7fe1432a2e
services: rottlog: Add /var/log/debug to '%default-rotations'.
* gnu/services/admin.scm (%rotated-files): Add "/var/log/debug".
2018-03-22 11:43:29 +01:00
Mark H Weaver
4d7c5f6d7e
gnu: linux-libre: Update to 4.15.12.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.12.
(%linux-libre-hash): Update hash.
2018-03-21 20:48:49 -04:00
Mark H Weaver
8ec89c358f
gnu: linux-libre@4.14: Update to 4.14.29.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.29.
(%linux-libre-4.14-hash): Update hash.
2018-03-21 20:47:53 -04:00
Vasile Dumitrascu
4dd0f8c0c1
gnu: emacs-deferred: Update to 0.5.1.
* gnu/packages/emacs.scm (emacs-deferred): Update to 0.5.1.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-22 00:09:55 +01:00
Vasile Dumitrascu
2fa6f63b16
gnu: emacs-clojure-mode: Update to 5.6.1.
* gnu/packages/emacs.scm (emacs-clojure-mode): Update to 5.6.1.
2018-03-22 00:08:15 +01:00
Leo Famulari
b87c76dcaa
Fix copyright notice for Nils Gillmann.
This is a followup to commit af23710ff5.

* gnu/packages/linux.scm: Fix name and email address for Nils Gillmann.
2018-03-21 18:26:25 -04:00
Leo Famulari
4102588f85
gnu: mpd: Update to 0.20.18.
* gnu/packages/mpd.scm (mpd): Update to 0.20.18.
2018-03-21 18:26:25 -04:00
Tobias Geerinckx-Rice
e2f9847be0
gnu: Add tinyscheme.
* gnu/packages/scheme.scm (tinyscheme): New public variable.
2018-03-21 18:38:23 +01:00
Tobias Geerinckx-Rice
0d73f1481b
gnu: libosinfo: Update usb.ids.
This follows up commit 0def912088, which
tried to use the CVS ID as the SVN revision, which unfortunately doesn't
work.

* gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Update
revision and hash for ‘usb.ids’.
2018-03-21 17:00:11 +01:00
Leo Famulari
ab68cbf2ee
gnu: rawtherapee: Update to 5.4.
* gnu/packages/photo.scm (rawtherapee): Update to 5.4.
2018-03-21 11:43:16 -04:00
Ricardo Wurmus
363ee7a3f4
gnu: pigx-chipseq: Update to 0.0.10.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.10.
[inputs]: Remove r-rcas and duplicate of snakemake; add r-biocparallel,
r-biostrings, r-dplyr, r-genomicalignments, rsamtools, r-s4vectors, r-tibble,
r-tidyr, r-htmlwidgets, and r-rmarkdown.
2018-03-21 11:52:56 +01:00
Danny Milosavljevic
0def912088
gnu: libosinfo: Fix URL for usb.ids.
Fixes <http://bugs.gnu.org/30890>.

* gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Fix URL of
"usb.ids".
2018-03-21 08:23:15 +01:00
Danny Milosavljevic
db6609bd10
gnu: texlive-fonts-amsfonts: Make build reproducible.
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[arguments]<#:phases>[build]:
Make build reproducible.
2018-03-21 01:36:50 +01:00
Leo Famulari
af23710ff5
gnu: util-linux: Fix CVE-2018-7738 without grafting.
* gnu/packages/linux.scm (util-linux)[replacement]: Remove field.
(util-linux-2.31.1): New variable.
* gnu/system.scm (%base-packages): Use util-linux-2.31.1.
2018-03-20 17:14:22 -04:00
Tobias Geerinckx-Rice
8023f0fd03
gnu: gparted: Update to 0.31.0.
* gnu/packages/disk.scm (gparted): Update to 0.31.0.
2018-03-20 19:49:47 +01:00
Tobias Geerinckx-Rice
8abbe5dc82
gnu: coq-flocq: Update phase style.
* gnu/packages/ocaml.scm (coq-flocq)[arguments]: Substitute INVOKE for
SYSTEM* and end all phases with an explicit #t.
2018-03-20 19:49:47 +01:00
Tobias Geerinckx-Rice
324f192700
gnu: leocad: Use HTTPS home page.
* gnu/packages/lego.scm (leocad)[home-page]: Use HTTPS.
2018-03-20 19:49:47 +01:00
Tobias Geerinckx-Rice
84775d65a8
gnu: leocad: Update phase style.
* gnu/packages/lego.scm (leocad)[arguments]: Substitute INVOKE for
SYSTEM* and end all phases with an explicit #t.
2018-03-20 19:49:47 +01:00
Tobias Geerinckx-Rice
b5df3e266b
gnu: leocad: Update to 18.02.
* gnu/packages/lego.scm (leocad): Update to 18.02.
2018-03-20 19:49:46 +01:00
Tobias Geerinckx-Rice
7d15cf175e
gnu: gmp-ecm: Update to 7.0.4.
* gnu/packages/algebra.scm (gmp-ecm): Update to 7.0.4.
[source]: Use predictable URI.
2018-03-20 19:49:46 +01:00
Tobias Geerinckx-Rice
ef8b9a771c
gnu: r-spams: Use predictable source URI.
* gnu/packages/statistics.scm (r-spams)[source]: Use predictable
URI.
2018-03-20 19:49:46 +01:00
Ricardo Wurmus
d7a11f1a8d
gnu: pigx-chipseq: Update to 0.0.9.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.9.
[inputs]: Add coreutils and grep.
2018-03-20 19:47:37 +01:00
Vijayalakshmi
385e8614ef
gnu: Add python-logwrap.
* gnu/packages/python.scm (python-logwrap): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-20 19:47:37 +01:00
Oleg Pykhalov
8c4bd04c86
gnu: python-ptyprocess: Update source URL.
* gnu/packages/python.scm (python-ptyprocess)[origin](source): Update URL.
2018-03-20 21:43:42 +03:00
Marius Bakke
576e0ae495
gnu: rofi: Update source hash.
The tarball was updated in-place with a bugfix; see
<https://github.com/DaveDavenport/rofi/issues/782>.

* gnu/packages/xdisorg.scm (rofi)[source](sha256): Adjust hash.
[arguments]: Remove phase 'add-missing-configuration-files'.
2018-03-20 19:23:34 +01:00
ng0
4a78fd4617
Correct name and Email for ng0.
* .mailmap: Correct name and Email for ng0.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/emacs.scm, gnu/packages/enlightenment.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm,
gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,
gnu/packages/guile.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm,
gnu/packages/image-viewers.scm, gnu/packages/image.scm,
gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm,
gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm,
gnu/packages/music.scm, gnu/packages/ncurses.scm,
gnu/packages/networking.scm, gnu/packages/nickle.scm,
gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-crypto.scm, gnu/packages/python-web.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/ruby.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/serialization.scm,
gnu/packages/shells.scm, gnu/packages/ssh.scm,
gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xfce.scm, gnu/packages/xml.scm,
gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm,
guix/licenses.scm: Likewise.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2018-03-20 17:17:58 +01:00
Kei Kebreau
f812145e3e
gnu: ruby-sanitize: Update to 4.6.3.
This fixes CVE-2018-3740.

* gnu/packages/ruby.scm (ruby-sanitize): Update to 4.6.3.
2018-03-20 11:20:33 -04:00
宋文武
32745b71e1
gnu: cdogs-sdl: Update to commit bab20313.
Fixes <https://bugs.gnu.org/30623>.

* gnu/packages/games.scm (cdogs-sdl): Update to commit
bab2031369b9ea2dbeb7eedbde10a43dd8ca83db.
[source]: Use git-fetch.
2018-03-20 22:33:18 +08:00
Sahithi Yarlagadda
c56739df6b
gnu: Add r-dyn.
* gnu/packages/cran.scm (r-dyn): New variable.
2018-03-20 15:00:52 +01:00
Ricardo Wurmus
4f1e4f33a0
gnu: pigx-bsseq: Update to 0.0.8.
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8.
2018-03-20 14:56:44 +01:00
Marius Bakke
dc7e07c9b9
Merge branch 'staging' 2018-03-20 14:13:05 +01:00
Ricardo Wurmus
616446ffbf
gnu: pigx-rnaseq: Update to 0.0.3.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3.
[inputs]: Add gzip.
2018-03-20 12:20:51 +01:00
Tobias Geerinckx-Rice
c657716ede
gnu: dnsmasq: Fix description typos.
* gnu/packages/dns.scm (dnsmasq)[description]: Fix some typos.
2018-03-20 02:03:52 +01:00
Tobias Geerinckx-Rice
4e6c51d4eb
gnu: dnsmasq: Update to 2.79.
* gnu/packages/dns.scm (dnsmasq): Update to 2.79.
2018-03-20 02:03:52 +01:00
Marius Bakke
a3e2b72ca9
gnu: certbot: Update to 0.22.1.
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.1.
2018-03-20 01:40:07 +01:00
Marius Bakke
818e6d9704
gnu: python-cryptography: Update to 2.2.
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.
2018-03-20 01:25:10 +01:00
Marius Bakke
c9838530d3
gnu: imlib2: Update to 1.5.1.
* gnu/packages/image.scm (imlib2): Update to 1.5.1.
2018-03-20 01:24:48 +01:00
Marius Bakke
264cb77646
gnu: imagemagick: Update to 6.9.9-39.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-39.
2018-03-20 01:09:16 +01:00
Marius Bakke
0d729c5b14
gnu: zziplib: Correct license.
* gnu/packages/compression.scm (zziplib)[license]: Add MPL1.1.
2018-03-20 01:06:43 +01:00
Marius Bakke
3f986ff657
gnu: zziplib: Update to 0.13.69.
* gnu/packages/compression.scm (zziplib): Update to 0.13.69.
[home-page]: Use new GitHub home.
[source](uri): Adjust accordingly.
[arguments]: Remove.
2018-03-20 00:56:04 +01:00
Marius Bakke
712be306a8
gnu: rofi: Update to 1.5.1.
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.1.
2018-03-20 00:34:00 +01:00
Marius Bakke
dbc75dadb5
Revert "Revert "gnu: patchelf: Update argument phase.""
This change only affects armhf, which doesn't use PatchELF.  My bad!

This reverts commit b1d096f869.
2018-03-20 00:20:59 +01:00
Marius Bakke
b1d096f869
Revert "gnu: patchelf: Update argument phase."
It causes too many rebuilds this late in the 'staging' cycle.

This reverts commit c1d1cd817c.
2018-03-20 00:06:34 +01:00
Leo Famulari
d41ad1d553
gnu: uwsgi: Update to 2.0.17 [fixes CVE-2018-7490].
* gnu/packages/web.scm (uwsgi): Update to 2.0.17.
[source]: Use HTTPS URL.
2018-03-19 18:56:26 -04:00
Ludovic Courtès
cfbf6de18c
gnu: mcron: Update to 1.1 and deprecate "mcron2".
* gnu/packages/guile.scm (mcron): Update to 1.1.
[native-inputs]: Add TZDATA-FOR-TESTS.
[arguments]: New field.
(mcron2): Define using 'deprecated-package'.
* gnu/services/mcron.scm: Replace 'mcron2' with 'mcron'.
* doc/guix.texi (Scheduled Job Execution): Likewise.
* gnu/tests/base.scm (%mcron-os): Remove comment about mcron2.
2018-03-19 23:19:49 +01:00
Mark H Weaver
f88028c432
gnu: linux-libre: Update to 4.15.11.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.11.
(%linux-libre-hash): Update hash.
2018-03-19 18:02:29 -04:00
Mark H Weaver
dd07a549d0
gnu: linux-libre@4.14: Update to 4.14.28.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.28.
(%linux-libre-4.14-hash): Update hash.
2018-03-19 18:01:49 -04:00
Mark H Weaver
cc367c7c7a
gnu: linux-libre@4.9: Update to 4.9.88.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.88.
2018-03-19 18:01:12 -04:00
Mark H Weaver
75abeb73e3
gnu: linux-libre@4.4: Update to 4.4.122.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.122.
2018-03-19 18:00:37 -04:00
Tobias Geerinckx-Rice
9010123565
gnu: weechat: Update to 2.1.
* gnu/packages/irc.scm (weechat): Update to 2.1.
2018-03-19 22:26:41 +01:00
Tobias Geerinckx-Rice
1d9b041c2e
gnu: perl-xml-compile-soap: Update to 3.24.
* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24.
2018-03-19 22:26:41 +01:00
Tobias Geerinckx-Rice
fa3fff430b
gnu: perl-xml-simple: Update to 2.25.
* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25.
2018-03-19 22:26:40 +01:00
Tobias Geerinckx-Rice
8d0d14479d
gnu: perl-math-random-secure: Fix typo.
* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix
the spelling of ‘millennia’.
2018-03-19 22:26:30 +01:00
Ricardo Wurmus
9dbdc830f6
gnu: pigx-bsseq: Update to 0.0.7.
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7.
[inputs]: Add coreutils, sed, and grep.
2018-03-19 21:06:51 +01:00
Ricardo Wurmus
096589035e
gnu: bismark: Fix references to gunzip.
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to
gunzip executable.
[inputs]: Add gzip.
2018-03-19 21:06:51 +01:00