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Author SHA1 Message Date
Tobias Geerinckx-Rice
3d2386563d
gnu: duperemove: Update to 0.11.1. 
* gnu/packages/disk.scm (duperemove): Update to 0.11.1.
 2019-02-13 05:42:55 +01:00
Leo Famulari
344e0f5621
gnu: netpbm: Fix a hard-coded path. 
Fixes <https://bugs.gnu.org/24735>.

* gnu/packages/netpbm.scm (netpbm)[arguments]: Patch a path in the 'configure'
phase.
 2019-02-12 23:23:19 -05:00
Paul Garlick
c7cf43ddec
gnu: emacs-biblio: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-biblio): Update to 0.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-02-12 20:33:26 -05:00
Marius Bakke
df4b9dd1a6
gnu: LXQt: Adjust imports for KDE move. 
This is a follow-up to commit bec2a2e10e.

* gnu/packages/lxqt.scm: Import (gnu packages kde-plasma).
 2019-02-13 00:43:27 +01:00
Jens M
3cdd2e95e9
gnu: Add font-adobe-source-serif-pro. 
* gnu/packages/fonts.scm (font-adobe-source-serif-pro): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-02-12 18:41:33 -05:00
Jens M
27e65afc10
gnu: Add font-adobe-source-sans-pro. 
* gnu/packages/fonts.scm (font-adobe-source-sans-pro): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-02-12 18:41:33 -05:00
Vagrant Cascadian
7fafdadd42
gnu: trezor-agent: Update 0.10.0. 
Fixes <https://bugs.gnu.org/34377>.

* gnu/packages/finance.scm (trezor-agent): Update to 0.10.0.
[arguments]<#:phases>[fixup-agent-py]: New phase.
[native-inputs]: Add python-hidapi.
[home-page]: Use https url.
 2019-02-13 00:26:03 +01:00
Vagrant Cascadian
df724c9cfc
gnu: python-trezor-agent: Update to 0.13.0. 
* gnu/packages/finance.scm (python-trezor-agent): Update to 0.13.0.
[propagated-inputs]: Add python-configargparse, python-daemon,
python-docutils, python-mnemonic, python-pymsgbox, python-wheel.
[native-inputs]: Add gnupg.
[synopsis]: Generalize description to hardware wallets.
[arguments]<#:phases>[remove-requires-backports-shutil-which]: New phase.
 2019-02-13 00:25:41 +01:00
Hartmut Goebel
fd56c4be53
gnu: Add kscreenlocker. 
* gnu/packages/kde-plasma.scm (kscreenlocker): New public variable.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2019-02-12 23:49:02 +01:00
Hartmut Goebel
6a97dfff19
gnu: Add kdecoration. 
* gnu/packages/kde-plasma.scm (kdecoration): New public variable.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2019-02-12 23:49:02 +01:00
Marius Bakke
856e3f9cb4
gnu: KDE Plasma: Update to 5.14.5. 
* gnu/packages/kde-plasma.scm (libkscreen): Update to 5.14.5.
(libksysguard): Likewise.
[inputs]: Add KGLOBALACCEL and KIO.
 2019-02-12 23:49:02 +01:00
Marius Bakke
fd11c0fd3d
gnu: KDE Frameworks: Update to 5.54.0. 
* gnu/packages/patches/kio-search-smbd-on-PATH.patch: Adjust context.
* gnu/packages/kde-frameworks.scm (kconfig): Update to 5.54.0.
[native-inputs]: Add DBUS.
[arguments]: Run tests with "dbus-launch".
(kio): Update to 5.54.1.
[inputs]: Add KCRASH.
(breeze-icons): Update to 5.54.0.
[arguments]: Remove.
(extra-cmake-modules, attica, bluez-qt, kapidox, karchive,
kcodecs, kcoreaddons, kdbusaddons, kdnssd, kguiaddons, ki18n, kidletime,
kirigami, kitemmodels, kitemviews, kplotting, ksyntaxhighlighting, kwayland,
kwidgetsaddons, kwindowsystem, modemmanager-qt, networkmanager-qt,
oxygen-icons, prison, qqc2-desktop-style, solid, sonnet, threadweaver,
kactivities, kauth, kcompletion, kcrash, kdoctools, kfilemetadata,
kimageformats, kjobwidgets, knotifications, kpackage, kpty, kunitconversion,
baloo, kactivities-stats, kbookmarks, kcmutils, kconfigwidgets, kdeclarative,
kded, kdesignerplugin, kdesu, kdewebkit, kemoticons, kglobalaccel,
kiconthemes, kinit, knewstuff, knotifyconfig, kparts, kpeople, krunner,
kservice, ktexteditor, ktextwidgets, kwallet, kxmlgui, kxmlrpcclient,
plasma-framework, kde-frameworkintegration, kdelibs4support, khtml, kjs,
kjsembed, kmediaplayer, kross): Update to 5.54.0.
 2019-02-12 23:49:02 +01:00
Marius Bakke
cdf7fea183
gnu: Add copyright line for commit c1144c78ad. 
* gnu/packages/kde-plasma.scm: Add copyright header.
 2019-02-12 23:49:02 +01:00
Marius Bakke
bec2a2e10e
gnu: Move KDE Plasma components to separate module. 
* gnu/packages/kde.scm (libkscreen, libksysguard): Move from here ...
* gnu/packages/kde-plasma.scm: ... to here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2019-02-12 23:49:02 +01:00
Marius Bakke
60562ec26b
gnu: libjpeg: Use HTTPS URLs. 
* gnu/packages/image.scm (libjpeg, libjpeg-8)[source, home-page]: Use HTTPS.
 2019-02-12 23:49:02 +01:00
Brett Gilio
be4d840cca
gnu: Add python-language-server. 
* gnu/packages/python-xyz.scm (python-language-server): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-02-12 23:30:17 +01:00
Brett Gilio
56f4ad47bd
gnu: Add python-docstyle. 
* gnu/packages/python-xyz.scm (python-docstyle): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-02-12 23:30:16 +01:00
Brett Gilio
346c87522e
gnu: Add python-jsonrpc-server. 
* gnu/packages/python-xyz.scm (python-jsonrpc-server): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-02-12 23:30:16 +01:00
Ludovic Courtès
2c880ef4e5
gnu: Add python-rope. 
* gnu/packages/python-xyz.scm (python-rope): New variable.

Co-authored-by: Brett Gilio <brettg@posteo.net>
 2019-02-12 23:30:16 +01:00
Brett Gilio
afb2971506
gnu: python2-rope: Change comment to reflect partial python3 support 
* gnu/packages/python-xyz.scm (python2-rope): Change comment to reflect
  partial python 3 support

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-02-12 23:30:16 +01:00
Leo Famulari
e2760d1a8b
gnu: Flatpak: Update to 1.2.3 [security fixes]. 
From 'NEWS' in the source distribution:

The CVE-2019-5736 runc vulnerability is about using /proc/self/exe
to modify the host side binary from the sandbox. This mostly does not
affect flatpak since the flatpak sandbox is not run with root permissions.
However, there is one case (running the apply_extra script for system
installs) where this happens, so this release contains a fix for that.

 * Don't expose /proc in apply_extra script sandbox.

* gnu/packages/package-management.scm (flatpak): Update to 1.2.3.
 2019-02-12 17:14:09 -05:00
Gábor Boskovits
dbf87ecb52
gnu: Add frrouting. 
* gnu/packages/networking.scm (frrouting): New variable.
 2019-02-12 22:24:27 +01:00
Leo Famulari
ea7cddaac7
gnu: Docker: Update to 18.09.2. 
* gnu/packages/docker.scm (%docker-version, docker, docker-cli): Update to
18.09.2.
(docker)[arguments]: Adjust to the Debian-specific 'iptables-legacy' lookup in
the 'patch-paths' phase.
 2019-02-12 12:53:12 -05:00
Leo Famulari
ce4593ec4c
gnu: runc: Update to 1.0.0-rc6 [fixes CVE-2019-5736]. 
* gnu/packages/virtualization.scm (runc): Update to 1.0.0-rc6.
[source]: Use a descriptive file-name. Add 'runc-CVE-2019-5736.patch'
* gnu/packages/patches/runc-CVE-2019-5736.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-02-12 12:53:12 -05:00
Tobias Geerinckx-Rice
571a01d8fa
gnu: lzlib: Remove minilzip comment. 
It lacks lzip's dependency on libstdc++.so and libm.so and may have its
uses.

* gnu/packages/compression.scm (lzlib): Don't judge.
 2019-02-12 17:38:24 +01:00
Tobias Geerinckx-Rice
2990422377
gnu: lzlib: Update to 1.11. 
* gnu/packages/compression.scm (lzlib): Update to 1.11.
 2019-02-12 17:38:24 +01:00
Tobias Geerinckx-Rice
76b2f08468
gnu: lzlib: Don't use NAME in source URI. 
* gnu/packages/compression.scm (lzlib)[source]: Hard-code NAME.
 2019-02-12 17:38:24 +01:00
Tobias Geerinckx-Rice
11b1c71d2e
gnu: clzip: Update to 1.11. 
* gnu/packages/compression.scm (clzip): Update to 1.11.
 2019-02-12 17:38:24 +01:00
Tobias Geerinckx-Rice
39e5d3b68d
gnu: clzip: Don't use NAME in source URI. 
* gnu/packages/compression.scm (clzip)[source]: Hard-code NAME.
 2019-02-12 17:38:23 +01:00
Tobias Geerinckx-Rice
9f4f085f9b
gnu: lunzip: Update to 1.11. 
* gnu/packages/compression.scm (lunzip): Update to 1.11.
 2019-02-12 17:38:23 +01:00
Tobias Geerinckx-Rice
a28cd47702
gnu: lunzip: Don't use NAME in source URI. 
* gnu/packages/compression.scm (lunzip)[source]: Hard-code NAME.
 2019-02-12 17:38:23 +01:00
Tobias Geerinckx-Rice
ff0e1eed32
gnu: plzip: Update to 1.8. 
* gnu/packages/compression.scm (plzip): Update to 1.8.
 2019-02-12 17:38:22 +01:00
Tobias Geerinckx-Rice
894669a787
gnu: plzip: Don't use NAME in source URI. 
* gnu/packages/compression.scm (plzip)[source]: Hard-code NAME.
 2019-02-12 17:38:22 +01:00
Tobias Geerinckx-Rice
b099b4a75a
gnu: lziprecover: Update to 1.21. 
* gnu/packages/compression.scm (lziprecover): Update to 1.21.
 2019-02-12 17:38:22 +01:00
Tobias Geerinckx-Rice
f6145bb652
gnu: lziprecover: Don't use NAME in source URI. 
* gnu/packages/compression.scm (lziprecover)[source]: Hard-code NAME.
 2019-02-12 17:38:22 +01:00
Tobias Geerinckx-Rice
da93d42413
gnu: perl-dbi: Update to 1.642. 
* gnu/packages/databases.scm (perl-dbi): Update to 1.642.
 2019-02-12 17:38:21 +01:00
Tobias Geerinckx-Rice
245e7a68e7
gnu: kyotocabinet: Update to 1.2.77. 
* gnu/packages/databases.scm (kyotocabinet): Update to 1.2.77.
 2019-02-12 17:38:21 +01:00
Tobias Geerinckx-Rice
e9bdef5fb4
gnu: os-prober: Update to 1.77. 
* gnu/packages/bootloaders.scm (os-prober): Update to 1.77.
 2019-02-12 17:38:21 +01:00
Tobias Geerinckx-Rice
51a8fc8b42
gnu: feh: Update to 3.1.2. 
* gnu/packages/image-viewers.scm (feh): Update to 3.1.2.
 2019-02-12 17:38:21 +01:00
Maxim Cournoyer
155194d97d
gnu: python-pybedtools: Update to 0.8.0 and fix build. 
From 40db2b4eae5ca61a3134cdaf7b156ed1ae9f7415 Mon Sep 17 00:00:00 2001
From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Date: Sun, 10 Feb 2019 23:39:25 -0500
Subject: [PATCH] gnu: python-pybedtools: Update to 0.8.0 and fix build.

* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.8.0.
[phases]{disable-broken-tests}: Do not disable "test_issue_157" and
"test_to_dataframe" tests.  Disable the "test_getting_example_beds".
{remove-cython-generated-files}: Add phase.
{generate-cython-extensions}: Add phase.
{check}: Move from python2-pybedtools to here.  Add a scripts
subdirectory of the build directory to the PATH, so that the tests can call
them.  Invoke pytest rather than nosetests.
[modules]: Move from python2-pybedtools to here.
[propagated-inputs]: Depend on the current BEDTOOLS rather than version 1.26.
[native-inputs]: Replace python-nose by python-pytest and add python-psutil.
 2019-02-12 17:16:05 +01:00
Efraim Flashner
b856a78c94
gnu: efilinux: Set ARCH variable on some architectures. 
Even with this patch efilinux does not build for arm*.

* gnu/packages/efi.scm (efilinux)[arguments]: On armhf-linux and
aarch64-linux set the ARCH variable apropriately.
 2019-02-12 18:08:19 +02:00
Ricardo Wurmus
385d7546e1
gnu: Add cnvkit. 
* gnu/packages/bioinformatics.scm (cnvkit): New variable.
 2019-02-12 15:41:02 +01:00
Ricardo Wurmus
c18dccffa2
gnu: Add r-dnacopy. 
* gnu/packages/bioconductor.scm (r-dnacopy): New variable.
 2019-02-12 15:41:02 +01:00
Ricardo Wurmus
ab61ce3730
gnu: python-reportlab: Update to 3.5.13. 
* gnu/packages/pdf.scm (python-reportlab): Update to 3.5.13.
[inputs]: Add freetype.
 2019-02-12 15:40:58 +01:00
Efraim Flashner
c86b5f1b9b
gnu: glibc@2.27: fix CVE-2018-11236, CVE-2018-11237. 
* gnu/packages/base.scm (glibc@2.27)[sources]: Add patches.
[properties]: New field, mark CVE-2017-18269 fixed.
* gnu/packages/patches/glibc-CVE-2018-11236.patch,
gnu/packages/patches/glibc-CVE-2018-11237.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2019-02-12 09:08:13 +02:00
Tobias Geerinckx-Rice
d4c95a237c
gnu: parallel: Update to 20190122. 
* gnu/packages/parallel.scm (parallel): Update to 20190122.
 2019-02-12 02:33:55 +01:00
Tobias Geerinckx-Rice
a661af5c9a
gnu: maven-resolver-api: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-resolver-api)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-12 02:33:55 +01:00
Tobias Geerinckx-Rice
57e3f06bbd
gnu: multipath-tools: Update to 0.7.9. 
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.9.
 2019-02-12 02:33:55 +01:00
Tobias Geerinckx-Rice
34920d2adf
gnu: websockify: Don't use unstable tarball. 
* gnu/packages/web.scm (websockify)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-12 02:33:55 +01:00
Tobias Geerinckx-Rice
2772debc74
gnu: libyajl: Don't use unstable tarball. 
* gnu/packages/web.scm (libyajl)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-02-12 02:33:54 +01:00