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Author SHA1 Message Date
Ricardo Wurmus
c9ec3c0763
gnu: python-pycosat: Update to 0.6.3. 
* gnu/packages/python-xyz.scm (python-pycosat): Update to 0.6.3.
 2020-08-12 23:35:08 +02:00
Ricardo Wurmus
bcdc61bfa1
gnu: tophat: Hide default GCC. 
* gnu/packages/bioinformatics.scm (tophat)[arguments]: Add build phase
"hide-default-gcc".
 2020-08-12 21:55:06 +02:00
Ricardo Wurmus
c9a1672841
gnu: Add python-conda-package-handling. 
* gnu/packages/package-management.scm (python-conda-package-handling): New
variable.
 2020-08-12 21:50:42 +02:00
Ricardo Wurmus
73092df468
gnu: libgtextutils: Hide default GCC. 
* gnu/packages/textutils.scm (libgtextutils)[arguments]: Add phase
hide-default-gcc.
 2020-08-12 21:26:40 +02:00
Nicolas Goaziou
2b16dbc3da
gnu: musescore: Update to 3.5. 
* gnu/packages/music.scm (musescore): Update to 3.5.
[origin]: Remove unused google_analytics library.
 2020-08-12 18:51:06 +02:00
Morgan Smith
df403985ed
gnu: Add emacs-explain-pause-mode. 
* gnu/packages/emacs-xyz.scm (emacs-explain-pause-mode): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-08-12 19:47:38 +03:00
Nicolas Goaziou
9856346be4
gnu: emacs-org-superstar: Update to 1.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.3.0.
 2020-08-12 17:41:56 +02:00
Morgan Smith
5d15d44987
gnu: Add emacs-kana. 
* gnu/packages/emacs-xyz.scm (emacs-kana): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-08-12 17:35:21 +02:00
Morgan Smith
ed0b773ff6
gnu: Add emacs-kanji. 
* gnu/packages/emacs-xyz.scm (emacs-kanji): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-08-12 17:22:50 +02:00
Jesse Gibbons
8677e8699a
gnu: freedink-engine: Fix SDL hints. 
* gnu/packages/games.scm: freedink: [patches]: Add fix.
* gnu/packages/patches/freedink-engine-fix-sdl-hints.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-08-12 17:08:47 +02:00
Jesse Gibbons
e7e69e56f5
gnu: freedink-engine: Call autoreconf. 
* gnu/packages/games.scm: freedink-engine (phases): add 'autoreconf

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-08-12 17:08:40 +02:00
Tobias Geerinckx-Rice
e77989bdcb
gnu: dovecot: Update to 2.3.11.3 [security fixes]. 
Fixes CVE-2020-12100, CVE-2020-12673, CVE-2020-10967, and CVE-2020-12674.

* gnu/packages/mail.scm (dovecot): Update to 2.3.11.3.
 2020-08-12 15:28:17 +02:00
Ricardo Wurmus
3f7922cbf5
haskell-build-system: register: Remove references to the doc output. 
* guix/build/haskell-build-system.scm (register): Strip references to the doc
output from the generated package config files; move the haddock files from
the "doc" output to the "lib" output.
 2020-08-12 14:45:49 +02:00
Ricardo Wurmus
75bda3c648
haskell-build-system: register: Respect lib output. 
* guix/build/haskell-build-system.scm (register): Use lib output if it exists.
 2020-08-12 14:45:49 +02:00
Ricardo Wurmus
718dc7d4a5
build-system/haskell: Add default output "static". 
* guix/build-system/haskell.scm (lower): Add OUTPUTS keyword and add the
"static" output in the common case.
(haskell-build): Set the default value for the OUTPUTS keyword to include the
"static" output.
* guix/build/haskell-build-system.scm (install): Move static libraries to the
"static" output if it exists.
 2020-08-12 14:45:48 +02:00
Ricardo Wurmus
9e5496e0ae
build-system/haskell: Configure to link with shared libraries. 
* guix/build/haskell-build-system.scm (configure): Add configure flags to
build shared libraries by default, to generate position independent code, and
to set the RUNPATH.
 2020-08-12 14:45:48 +02:00
Ricardo Wurmus
0347888a7e
build-system/haskell: Refactor configure step. 
* guix/build/haskell-build-system.scm (configure): Replace append
with quasiquotes and splicing.
 2020-08-12 14:45:48 +02:00
Ricardo Wurmus
67cb9fa235
build-system/haskell: Support parallel builds. 
* guix/build-system/haskell.scm (haskell-build): Add keyword PARALLEL-BUILD?
and pass it on to the builder.
* guix/build/haskell-build-system.scm (build): Accept keyword PARALLEL-BUILD?
and pass the number of parallel jobs to GHC.
 2020-08-12 14:45:48 +02:00
Timothy Sample
54c9b5bfd7
gnu: Add ghc-8.8. 
* gnu/packages/haskell.scm (ghc-8.8): New variable.
 2020-08-12 14:45:44 +02:00
Ricardo Wurmus
1c831f42cf
gnu: r-car: Update to 3.0-9. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-9.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
d7570fc79b
gnu: r-fit-models: Update to 0.64. 
* gnu/packages/statistics.scm (r-fit-models): Update to 0.64.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
15d4f9e109
gnu: r-rrcov: Update to 1.5-5. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.5-5.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
6cb15e098c
gnu: r-hmisc: Update to 4.4-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-1.
[propagated-inputs]: Remove r-acepack.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
1713df8e9a
gnu: r-tidyr: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.1.
[propagated-inputs]: Remove r-rcpp and r-stringi; add r-cpp11.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
06576a5bd0
gnu: r-dt: Update to 0.15. 
* gnu/packages/statistics.scm (r-dt): Update to 0.15.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
47b57ce5dc
gnu: r-xml: Update to 3.99-0.5. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.5.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
228a197278
gnu: r-rcpparmadillo: Update to 0.9.900.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.2.0.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
210ae7ba60
gnu: r-devtools: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.3.1.
[propagated-inputs]: Remove r-crayon, r-digest, r-glue, and r-git2r.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
c2b02b1b49
gnu: r-httr: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.2.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
81cc043322
gnu: r-data-table: Update to 1.13.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.13.0.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
4a791a2f6d
gnu: r-dplyr: Update to 1.0.1. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.1.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
b4552eba89
gnu: r-ggdendro: Update to 0.1.21. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.21.
[propagated-inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:15 +02:00
Ricardo Wurmus
284caaf505
gnu: r-bit64: Update to 4.0.2. 
* gnu/packages/statistics.scm (r-bit64): Update to 4.0.2.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
d9dc684dce
gnu: r-bit: Update to 4.0.4. 
* gnu/packages/statistics.scm (r-bit): Update to 4.0.4.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
4ebeb5329b
gnu: r-brms: Update to 2.13.5. 
* gnu/packages/cran.scm (r-brms): Update to 2.13.5.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
b65959fa72
gnu: r-rxnat: Update to 1.0.12. 
* gnu/packages/cran.scm (r-rxnat): Update to 1.0.12.
[propagated-inputs]: Add r-dplyr.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
c8ccc115a4
gnu: r-aws: Update to 2.4-3. 
* gnu/packages/cran.scm (r-aws): Update to 2.4-3.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
8754e5b761
gnu: r-rstanarm: Update to 2.21.1. 
* gnu/packages/cran.scm (r-rstanarm): Update to 2.21.1.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
ad53122f35
gnu: r-rstan: Update to 2.21.2. 
* gnu/packages/cran.scm (r-rstan): Update to 2.21.2.
[propagated-inputs]: Add r-withr.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
f74941f7d9
gnu: r-quanteda: Update to 2.1.1. 
* gnu/packages/cran.scm (r-quanteda): Update to 2.1.1.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
7094d92aaa
gnu: r-shinycssloaders: Update to 1.0.0. 
* gnu/packages/cran.scm (r-shinycssloaders): Update to 1.0.0.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
d222c7527d
gnu: r-adamethods: Update to 1.2.1. 
* gnu/packages/cran.scm (r-adamethods): Update to 1.2.1.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
ac6ce7bb52
gnu: r-fda: Update to 5.1.5.1. 
* gnu/packages/cran.scm (r-fda): Update to 5.1.5.1.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
eaa1cc3bb6
gnu: r-rgdal: Update to 1.5-16. 
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-16.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
1f5bc20aca
gnu: r-parameters: Update to 0.8.2. 
* gnu/packages/cran.scm (r-parameters): Update to 0.8.2.
 2020-08-12 13:57:14 +02:00
Ricardo Wurmus
3ea13fd105
gnu: r-dalex: Update to 1.3.1.1. 
* gnu/packages/cran.scm (r-dalex): Update to 1.3.1.1.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus
606dd761ac
gnu: r-ibreakdown: Update to 1.3.1. 
* gnu/packages/cran.scm (r-ibreakdown): Update to 1.3.1.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus
a2989498a7
gnu: r-ingredients: Update to 1.3.1. 
* gnu/packages/cran.scm (r-ingredients): Update to 1.3.1.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus
30b1b051e6
gnu: r-gbm: Update to 2.1.8. 
* gnu/packages/cran.scm (r-gbm): Update to 2.1.8.
[propagated-inputs]: Remove r-gridextra.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:13 +02:00
Ricardo Wurmus
fb883e0dfe
gnu: r-hierfstat: Update to 0.5-7. 
* gnu/packages/cran.scm (r-hierfstat): Update to 0.5-7.
[propagated-inputs]: Add r-gaston.
[native-inputs]: Add r-knitr.
 2020-08-12 13:57:13 +02:00